Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G193800 Phaseolus vulgaris HOM05D005716 ORTHO05D007885 3.5e-147 525.0 283 100.0
VMungo0251G2847 Vigna mungo HOM05D005716 ORTHO05D007885 1.5e-142 509.6 283 94.0
Glyma.08G084800 Glycine max HOM05D005716 ORTHO05D007885 1.8e-135 486.1 251 94.0
Lalb_Chr07g0188621 Lupinus albus HOM05D005716 ORTHO05D007885 1.2e-134 483.4 249 93.6
arahy.Tifrunner.gnm1.ann1.16PV68 Arachis hypogaea HOM05D005716 ORTHO05D007885 3.4e-134 481.9 251 92.4
arahy.Tifrunner.gnm1.ann1.MD42KV Arachis hypogaea HOM05D005716 ORTHO05D007885 3.4e-134 481.9 251 92.4
TPR.G4903 Trifolium pratense HOM05D005716 ORTHO05D007885 1.0e-133 480.3 249 93.6
Medtr4g096770 Medicago truncatula HOM05D005716 ORTHO05D007885 6.5e-133 477.6 249 93.2
Psat7g090160 Pisum sativum HOM05D005716 ORTHO05D007885 8.5e-133 477.2 247 93.9
TAR627G0480 Trochodendron aralioides HOM05D005716 ORTHO05D007885 1.1e-132 476.9 251 90.8
Atru.chr10.1272 Acer truncatum HOM05D005716 ORTHO05D007885 1.9e-132 476.1 251 91.2
Ca_18267_v3 Cicer arietinum L. HOM05D005716 ORTHO05D007885 4.2e-132 474.9 251 91.6
QL05p058825 Quercus lobata HOM05D005716 ORTHO05D007885 4.2e-132 474.9 250 92.0
QL05p058849 Quercus lobata HOM05D005716 ORTHO05D007885 1.2e-131 473.4 250 91.6
RcHm_v2.0_Chr5g0013751 Rosa chinensis HOM05D005716 ORTHO05D007885 2.1e-131 472.6 251 90.0
Thecc.06G152400 Theobroma cacao HOM05D005716 ORTHO05D007885 2.1e-131 472.6 247 91.9
CANSAT80G0786 Cannabis sativa HOM05D005716 ORTHO05D007885 3.6e-131 471.9 249 92.0
SGA_v2.0_scaffold106G30642 Striga asiatica HOM05D005716 ORTHO05D007885 3.6e-131 471.9 250 90.8
Lj1A1186G50 Lonicera japonica HOM05D005716 ORTHO05D007885 4.6e-131 471.5 249 90.4
Nitab4.5_0005219g0060 Nicotiana tabacum HOM05D005716 ORTHO05D007885 4.6e-131 471.5 249 90.0
CARHR128550 Cardamine hirsuta HOM05D005716 ORTHO05D007885 7.9e-131 470.7 249 91.2
DCAR_005122 Daucus carota HOM05D005716 ORTHO05D007885 7.9e-131 470.7 251 90.0
EL10Ac8g19740 Beta vulgaris HOM05D005716 ORTHO05D007885 1.0e-130 470.3 251 89.2
Ciclev10016173m.g Citrus clementina HOM05D005716 ORTHO05D007885 1.0e-130 470.3 284 86.3
CAN.G650.23 Capsicum annuum HOM05D005716 ORTHO05D007885 1.8e-130 469.5 249 89.6
TWI09G1196 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 1.8e-130 469.5 251 90.0
Aa31LG10G6910 Aethionema arabicum HOM05D005716 ORTHO05D007885 2.3e-130 469.2 249 90.4
BolC4t27848H Brassica oleracea HOM05D005716 ORTHO05D007885 2.3e-130 469.2 251 89.6
MD10G1263700 Malus domestica HOM05D005716 ORTHO05D007885 3.0e-130 468.8 251 89.6
Peaxi162Scf00022g00310 Petunia axillaris HOM05D005716 ORTHO05D007885 3.0e-130 468.8 251 89.6
Duzib235G0716 Durio zibethinus HOM05D005716 ORTHO05D007885 3.9e-130 468.4 249 91.2
ECA232G4567 Erigeron canadensis HOM05D005716 ORTHO05D007885 3.9e-130 468.4 251 89.6
Gohir.D10G040400 Gossypium hirsutum HOM05D005716 ORTHO05D007885 3.9e-130 468.4 247 91.9
BcaB06g28772 Brassica carinata HOM05D005716 ORTHO05D007885 5.1e-130 468.0 249 90.4
C04p63810 Brassica napus HOM05D005716 ORTHO05D007885 5.1e-130 468.0 249 90.4
BraA04t18144Z Brassica rapa HOM05D005716 ORTHO05D007885 5.1e-130 468.0 249 90.4
FvH4_3g05780 Fragaria vesca HOM05D005716 ORTHO05D007885 5.1e-130 468.0 251 89.6
FAN11G1575 Fragaria x ananassa HOM05D005716 ORTHO05D007885 5.1e-130 468.0 251 89.6
FAN21G0047 Fragaria x ananassa HOM05D005716 ORTHO05D007885 5.1e-130 468.0 251 89.6
Lsat_1_v5_gn_1_96721 Lactuca sativa HOM05D005716 ORTHO05D007885 5.1e-130 468.0 249 91.2
Thhalv10017058m.g Eutrema salsugineum HOM05D005716 ORTHO05D007885 6.7e-130 467.6 249 90.8
Nn3g20701 Nelumbo nucifera HOM05D005716 ORTHO05D007885 6.7e-130 467.6 249 89.2
AL4G30440 Arabidopsis lyrata HOM05D005716 ORTHO05D007885 8.7e-130 467.2 249 90.8
Gorai.011G042600 Gossypium raimondii HOM05D005716 ORTHO05D007885 8.7e-130 467.2 247 91.5
Manes.17G068800 Manihot esculenta HOM05D005716 ORTHO05D007885 1.1e-129 466.8 249 89.2
Sopen02g019750 Solanum pennellii HOM05D005716 ORTHO05D007885 1.1e-129 466.8 249 89.6
CiPaw.09G125500 Carya illinoinensis HOM05D005716 ORTHO05D007885 1.5e-129 466.5 251 90.0
COL.COLO4_31094 Corchorus olitorius HOM05D005716 ORTHO05D007885 1.5e-129 466.5 247 90.7
CsaV3_1G032590 Cucumis sativus L. HOM05D005716 ORTHO05D007885 1.5e-129 466.5 249 90.4
Eucgr.E02383 Eucalyptus grandis HOM05D005716 ORTHO05D007885 1.9e-129 466.1 249 90.0
Eucgr.E02408 Eucalyptus grandis HOM05D005716 ORTHO05D007885 2.5e-129 465.7 249 90.0
FAN16G2159 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.5e-129 465.7 251 89.2
Solyc02g070670.4 Solanum lycopersicum HOM05D005716 ORTHO05D007885 2.5e-129 465.7 249 89.2
THA.LOC104812667 Tarenaya hassleriana HOM05D005716 ORTHO05D007885 2.5e-129 465.7 249 90.0
PGSC0003DMG400008287 Solanum tuberosum HOM05D005716 ORTHO05D007885 4.3e-129 464.9 249 89.2
Aqoxy4G00105 Aquilegia oxysepala HOM05D005716 ORTHO05D007885 5.7e-129 464.5 251 88.8
MSTRG.13250 Avicennia marina HOM05D005716 ORTHO05D007885 5.7e-129 464.5 250 89.2
AT2G34470 Arabidopsis thaliana HOM05D005716 ORTHO05D007885 7.4e-129 464.2 249 90.0
MD05G1285700 Malus domestica HOM05D005716 ORTHO05D007885 7.4e-129 464.2 249 90.0
Potri.002G243500 Populus trichocarpa HOM05D005716 ORTHO05D007885 7.4e-129 464.2 251 89.6
Potri.002G243700 Populus trichocarpa HOM05D005716 ORTHO05D007885 7.4e-129 464.2 251 89.6
Sabra02G0185400 Salix brachista HOM05D005716 ORTHO05D007885 9.7e-129 463.8 251 88.8
Sp4g16740 Schrenkiella parvula HOM05D005716 ORTHO05D007885 9.7e-129 463.8 249 90.0
PGR042G3684 Punica granatum HOM05D005716 ORTHO05D007885 1.3e-128 463.4 249 89.6
Carub.0004s1614 Capsella rubella HOM05D005716 ORTHO05D007885 1.7e-128 463.0 249 89.6
HanXRQChr08g0230021 Helianthus annuus HOM05D005716 ORTHO05D007885 1.7e-128 463.0 249 90.0
GSVIVG01021429001 Vitis vinifera HOM05D005716 ORTHO05D007885 2.8e-128 462.2 251 88.0
Cc09_g09370 Coffea canephora HOM05D005716 ORTHO05D007885 3.7e-128 461.8 249 89.2
CDE02G4127 Ceratophyllum demersum HOM05D005716 ORTHO05D007885 6.3e-128 461.1 251 88.0
Rhsim07G0173200 Rhododendron simsii HOM05D005716 ORTHO05D007885 6.3e-128 461.1 260 86.2
Dinv32271 Davidia involucrata HOM05D005716 ORTHO05D007885 8.2e-128 460.7 242 91.7
Migut.H01369 Erythranthe guttata HOM05D005716 ORTHO05D007885 8.2e-128 460.7 250 88.8
MBI07_g26370_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 8.2e-128 460.7 251 88.0
unitig_32.g11441 Utricularia gibba HOM05D005716 ORTHO05D007885 1.1e-127 460.3 248 87.5
Prupe.4G079000 Prunus persica HOM05D005716 ORTHO05D007885 1.4e-127 459.9 251 88.4
MBI07_g15285_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 1.8e-127 459.5 251 87.6
Actinidia07685 Actinidia chinensis HOM05D005716 ORTHO05D007885 4.1e-127 458.4 249 90.4
Sc05g0006370 Simmondsia chinensis HOM05D005716 ORTHO05D007885 4.1e-127 458.4 248 88.3
TWI53G0431 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 9.1e-127 457.2 247 89.1
PSO017G0333 Papaver somniferum HOM05D005716 ORTHO05D007885 3.4e-126 455.3 246 89.0
SalBow7G1512 Salvia bowleyana HOM05D005716 ORTHO05D007885 3.4e-126 455.3 250 86.8
TWI09G0986 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 7.7e-126 454.1 247 89.5
AUR62027525 Chenopodium quinoa HOM05D005716 ORTHO05D007885 2.2e-125 452.6 245 89.0
Oeu030916.2 Olea europaea HOM05D005716 ORTHO05D007885 2.9e-125 452.2 267 83.1
ATR0585G042 Amborella trichopoda HOM05D005716 ORTHO05D007885 5.0e-125 451.4 249 88.0
Sed0010647 Sechium edule HOM05D005716 ORTHO05D007885 4.2e-124 448.4 249 87.1
SEGI_04817 Sequoiadendron giganteum HOM05D005716 ORTHO05D007885 5.5e-124 448.0 249 86.7
HPP92_010050 Vanilla planifolia HOM05D005716 ORTHO05D007885 3.0e-122 442.2 249 84.7
PSO478G1410 Papaver somniferum HOM05D005716 ORTHO05D007885 4.8e-120 434.9 248 85.5
Mapoly0128s0016 Marchantia polymorpha HOM05D005716 ORTHO05D007885 3.1e-119 432.2 248 83.1
Pp3c24_19130 Physcomitrium patens HOM05D005716 ORTHO05D007885 2.9e-117 425.6 247 83.0
MELO3C002721.2 Cucumis melo HOM05D005716 ORTHO05D007885 3.8e-117 425.2 222 93.2
Os05g0565200 Oryza sativa ssp. japonica HOM05D005716 ORTHO05D007885 1.1e-116 423.7 249 83.5
vmacro17882 Vaccinium macrocarpon HOM05D005716 ORTHO05D007885 4.7e-115 418.3 348 64.4
AagrBONN_evm.TU.Sc2ySwM_117.3588 Anthoceros agrestis HOM05D005716 ORTHO05D007885 1.8e-114 416.4 242 82.2
SMO353G0068 Selaginella moellendorffii HOM05D005716 ORTHO05D007885 2.3e-114 416.0 249 81.1
Zm00001eb343840 Zea mays HOM05D005716 ORTHO05D007885 6.7e-114 414.5 228 88.2
Cpa.g.sc166.24 Carica papaya HOM05D005716 ORTHO05D007885 8.8e-114 414.1 261 79.7
ClCG03G007040 Citrullus lanatus HOM05D005716 ORTHO05D007885 2.6e-113 412.5 284 80.3
CBR_g38955 Chara braunii HOM05D005716 ORTHO05D007885 6.1e-107 391.3 249 74.3
CSS0037137 Camellia sinensis var. sinensis HOM05D005716 ORTHO05D007885 7.5e-105 384.4 216 88.0
Haze_05577 Corylus avellana HOM05D005716 ORTHO05D007885 1.5e-97 360.1 191 91.6
Hma1.2p1_0286F.1_g114150 Hydrangea macrophylla HOM05D005716 ORTHO05D007885 5.0e-93 345.1 190 87.9
MCO04G141 Micromonas commoda HOM05D005716 ORTHO05D007885 2.5e-92 342.8 244 68.0
RcHm_v2.0_Chr5g0013741 Rosa chinensis HOM05D005716 ORTHO05D007885 4.9e-88 328.6 171 91.8
Nitab4.5_0001655g0090 Nicotiana tabacum HOM05D005716 ORTHO05D007885 4.1e-87 325.5 171 90.6
Hund21524 Selenicereus undatus HOM05D005716 ORTHO05D007885 6.6e-85 318.2 181 85.6
PSO017G6742 Papaver somniferum HOM05D005716 ORTHO05D007885 2.1e-83 313.2 168 90.5
Gohir.A10G039600 Gossypium hirsutum HOM05D005716 ORTHO05D007885 5.2e-82 308.5 161 92.5
A04p06350 Brassica napus HOM05D005716 ORTHO05D007885 2.2e-80 303.1 182 83.0
PRCOL_00002216 Prasinoderma coloniale HOM05D005716 ORTHO05D007885 1.1e-76 290.8 185 75.7
FAN17G1884 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.5e-73 280.4 164 84.1
FAN23G0273 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.7e-72 276.9 164 81.7
FAN25G2810 Fragaria x ananassa HOM05D005716 ORTHO05D007885 4.9e-72 275.4 164 82.9
BcaC02g09191 Brassica carinata HOM05D005716 ORTHO05D031863 2.4e-71 273.1 145 92.4
C04p39880 Brassica napus HOM05D005716 ORTHO05D007885 3.0e-69 266.2 147 88.4
BolC4t25559H Brassica oleracea HOM05D005716 ORTHO05D007885 1.5e-68 263.8 155 84.5
BraA04t16339Z Brassica rapa HOM05D005716 ORTHO05D007885 1.2e-67 260.8 155 83.9
FAN25G0382 Fragaria x ananassa HOM05D005716 ORTHO05D007885 3.6e-67 259.2 173 76.3
FAN02G1132 Fragaria x ananassa HOM05D005716 ORTHO05D007885 6.2e-67 258.5 213 65.3
RcHm_v2.0_Chr5g0013721 Rosa chinensis HOM05D005716 ORTHO05D007885 3.1e-66 256.1 156 80.1
AUR62030221 Chenopodium quinoa HOM05D005716 ORTHO05D007885 1.7e-64 250.4 146 83.6
RcHm_v2.0_Chr5g0013731 Rosa chinensis HOM05D005716 ORTHO05D007885 1.5e-60 237.3 148 79.1
Haze_26810 Corylus avellana HOM05D005716 ORTHO05D164461 5.6e-52 208.8 190 54.2
Dinv30725 Davidia involucrata HOM05D005716 ORTHO05D007885 2.8e-51 206.5 141 72.3
FAN02G0019 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.4e-50 203.4 151 70.2
MSTRG.14769 Avicennia marina HOM05D005716 ORTHO05D007885 2.4e-39 166.8 93 84.9
AUR62030223 Chenopodium quinoa HOM05D005716 ORTHO05D044022 2.7e-38 163.3 167 53.9
FAN08G0336 Fragaria x ananassa HOM05D005716 ORTHO05D044022 8.4e-32 141.7 76 89.5
arahy.Tifrunner.gnm1.ann1.8LN2Z6 Arachis hypogaea HOM05D005716 ORTHO05D087704 7.9e-30 135.2 129 58.1
VMungo1309G0118 Vigna mungo HOM05D005716 ORTHO05D437644 3.0e-29 133.3 71 90.1
CAN.G94.3 Capsicum annuum HOM05D005716 ORTHO05D115662 1.1e-23 114.8 93 62.4
Dinv30726 Davidia involucrata HOM05D005716 ORTHO05D014961 1.1e-23 114.8 58 89.7
C05p14270 Brassica napus HOM05D013073 ORTHO05D014961 1.2e-17 94.7 55 81.8
C06p00300 Brassica napus HOM05D013073 ORTHO05D014961 3.4e-17 93.2 55 80.0
BcaC08g42818 Brassica carinata HOM05D013073 ORTHO05D014961 2.5e-15 87.0 50 82.0
A04p26400 Brassica napus HOM05D005716 ORTHO05D099386 5.5e-15 85.9 46 80.4


User provided reference genes

Program Settings