Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G192901 Phaseolus vulgaris HOM05D003235 ORTHO05D003863 5.3e-92 340.9 160 100.0
VMungo0251G3552 Vigna mungo HOM05D003235 ORTHO05D003863 1.2e-51 206.8 163 65.0
Phvul.002G191600 Phaseolus vulgaris HOM05D003235 ORTHO05D003863 1.6e-51 206.5 163 65.6
Glyma.08G085800 Glycine max HOM05D003235 ORTHO05D003863 2.7e-51 205.7 163 63.8
Glyma.05G131100 Glycine max HOM05D003235 ORTHO05D003863 3.5e-51 205.3 163 63.8
Psat1g147840 Pisum sativum HOM05D003235 ORTHO05D003863 6.0e-51 204.5 163 63.2
arahy.Tifrunner.gnm1.ann1.5A4VTA Arachis hypogaea HOM05D003235 ORTHO05D003863 7.8e-51 204.1 163 64.4
arahy.Tifrunner.gnm1.ann1.MB0JZI Arachis hypogaea HOM05D003235 ORTHO05D003863 7.8e-51 204.1 163 64.4
Ca_02021_v3 Cicer arietinum L. HOM05D003235 ORTHO05D003863 7.8e-51 204.1 163 64.4
Ca_25919_v3 Cicer arietinum L. HOM05D003235 ORTHO05D003863 7.8e-51 204.1 163 64.4
Lj6g0023552 Lotus japonicus HOM05D003235 ORTHO05D003863 1.0e-50 203.8 163 63.8
Rhsim11G0196500 Rhododendron simsii HOM05D003235 ORTHO05D003863 2.3e-50 202.6 168 60.7
Lalb_Chr20g0114201 Lupinus albus HOM05D003235 ORTHO05D003863 1.5e-49 199.9 163 63.2
Cpa.g.sc20.187 Carica papaya HOM05D003235 ORTHO05D003863 1.9e-49 199.5 163 63.8
FAN08G2058 Fragaria x ananassa HOM05D003235 ORTHO05D003863 1.9e-49 199.5 151 65.6
Lalb_Chr15g0083901 Lupinus albus HOM05D003235 ORTHO05D003863 1.9e-49 199.5 163 63.2
TPR.G31486 Trifolium pratense HOM05D003235 ORTHO05D003863 2.5e-49 199.1 163 63.8
Glyma.09G119200 Glycine max HOM05D003235 ORTHO05D003863 3.3e-49 198.7 163 63.2
CSS0024694 Camellia sinensis var. sinensis HOM05D003235 ORTHO05D003863 4.3e-49 198.4 163 63.8
Migut.N01350 Erythranthe guttata HOM05D003235 ORTHO05D003863 4.3e-49 198.4 163 62.0
Sabra09G0111000 Salix brachista HOM05D003235 ORTHO05D003863 4.3e-49 198.4 163 63.2
Atru.chr5.3499 Acer truncatum HOM05D003235 ORTHO05D003863 5.6e-49 198.0 163 62.0
Cc09_g10610 Coffea canephora HOM05D003235 ORTHO05D003863 7.3e-49 197.6 163 62.6
Dinv14158 Davidia involucrata HOM05D003235 ORTHO05D003863 7.3e-49 197.6 163 63.2
SalBow5G2197 Salvia bowleyana HOM05D003235 ORTHO05D003863 7.3e-49 197.6 163 62.0
SalBow5G2974 Salvia bowleyana HOM05D003235 ORTHO05D003863 7.3e-49 197.6 163 62.0
SGA_v2.0_scaffold98G29294 Striga asiatica HOM05D003235 ORTHO05D003863 7.3e-49 197.6 163 62.0
Thecc.02G046900 Theobroma cacao HOM05D003235 ORTHO05D003863 7.3e-49 197.6 163 63.2
CiPaw.05G089800 Carya illinoinensis HOM05D003235 ORTHO05D003863 9.5e-49 197.2 163 63.2
Gohir.A04G125200 Gossypium hirsutum HOM05D003235 ORTHO05D003863 9.5e-49 197.2 163 62.6
Gohir.D04G170000 Gossypium hirsutum HOM05D003235 ORTHO05D003863 9.5e-49 197.2 163 62.6
Gorai.012G158300 Gossypium raimondii HOM05D003235 ORTHO05D003863 9.5e-49 197.2 163 62.6
HanXRQChr11g0335221 Helianthus annuus HOM05D003235 ORTHO05D003863 9.5e-49 197.2 163 62.0
Manes.11G106900 Manihot esculenta HOM05D003235 ORTHO05D003863 9.5e-49 197.2 163 62.0
vmacro09726 Vaccinium macrocarpon HOM05D003235 ORTHO05D003863 9.5e-49 197.2 163 63.2
GSVIVG01023935001 Vitis vinifera HOM05D003235 ORTHO05D003863 9.5e-49 197.2 163 63.2
COL.COLO4_17945 Corchorus olitorius HOM05D003235 ORTHO05D003863 1.2e-48 196.8 161 63.4
Lsat_1_v5_gn_8_120260 Lactuca sativa HOM05D003235 ORTHO05D003863 1.2e-48 196.8 163 60.7
Medtr4g127910 Medicago truncatula HOM05D003235 ORTHO05D003863 1.2e-48 196.8 163 62.6
Potri.004G183300 Populus trichocarpa HOM05D003235 ORTHO05D003863 1.2e-48 196.8 163 62.0
Rhsim05G0048800 Rhododendron simsii HOM05D003235 ORTHO05D003863 1.2e-48 196.8 163 63.2
VMungo1215G3112 Vigna mungo HOM05D003235 ORTHO05D003863 1.2e-48 196.8 163 62.6
Actinidia32018 Actinidia chinensis HOM05D003235 ORTHO05D003863 1.6e-48 196.4 163 63.2
COL.COLO4_24688 Corchorus olitorius HOM05D003235 ORTHO05D003863 1.6e-48 196.4 172 59.3
Ah.01g023630 Amaranthus hybridus HOM05D003235 ORTHO05D003863 2.1e-48 196.1 152 63.8
Phvul.003G022900 Phaseolus vulgaris HOM05D003235 ORTHO05D003863 2.1e-48 196.1 163 62.0
TWI79G1341 Tripterygium wilfordii HOM05D003235 ORTHO05D003863 2.1e-48 196.1 163 62.6
Aqoxy7G01395 Aquilegia oxysepala HOM05D003235 ORTHO05D003863 2.8e-48 195.7 163 63.8
CAN.G1804.1 Capsicum annuum HOM05D003235 ORTHO05D003863 2.8e-48 195.7 163 62.0
Ciclev10028672m.g Citrus clementina HOM05D003235 ORTHO05D003863 2.8e-48 195.7 163 62.0
DCAR_015672 Daucus carota HOM05D003235 ORTHO05D003863 2.8e-48 195.7 163 62.0
Duzib248G1500 Durio zibethinus HOM05D003235 ORTHO05D003863 2.8e-48 195.7 163 62.6
Eucgr.I01507 Eucalyptus grandis HOM05D003235 ORTHO05D003863 2.8e-48 195.7 163 62.0
Gohir.D02G230900 Gossypium hirsutum HOM05D003235 ORTHO05D003863 2.8e-48 195.7 163 63.2
Gorai.005G258500 Gossypium raimondii HOM05D003235 ORTHO05D003863 2.8e-48 195.7 163 63.2
Manes.04G065100 Manihot esculenta HOM05D003235 ORTHO05D003863 2.8e-48 195.7 163 62.0
Potri.009G143200 Populus trichocarpa HOM05D003235 ORTHO05D003863 2.8e-48 195.7 163 62.6
Solyc08g082340.3 Solanum lycopersicum HOM05D003235 ORTHO05D003863 2.8e-48 195.7 163 62.0
Sopen08g030600 Solanum pennellii HOM05D003235 ORTHO05D003863 2.8e-48 195.7 163 62.0
TWI31G0863 Tripterygium wilfordii HOM05D003235 ORTHO05D003863 2.8e-48 195.7 163 62.0
Actinidia20561 Actinidia chinensis HOM05D003235 ORTHO05D003863 3.6e-48 195.3 163 63.2
CANSAT11G0145 Cannabis sativa HOM05D003235 ORTHO05D003863 3.6e-48 195.3 162 61.1
Haze_02042 Corylus avellana HOM05D003235 ORTHO05D003863 3.6e-48 195.3 163 61.3
Oeu051847.1 Olea europaea HOM05D003235 ORTHO05D003863 3.6e-48 195.3 163 62.6
Medtr2g438210 Medicago truncatula HOM05D003235 ORTHO05D003863 4.7e-48 194.9 161 62.7
MSTRG.27622 Avicennia marina HOM05D003235 ORTHO05D003863 6.2e-48 194.5 163 61.3
Peaxi162Scf00362g00250 Petunia axillaris HOM05D003235 ORTHO05D003863 6.2e-48 194.5 163 62.6
RcHm_v2.0_Chr6g0280151 Rosa chinensis HOM05D003235 ORTHO05D003863 6.2e-48 194.5 163 60.1
CAN.G1235.15 Capsicum annuum HOM05D003235 ORTHO05D003863 8.1e-48 194.1 163 62.0
ECA236G3279 Erigeron canadensis HOM05D003235 ORTHO05D003863 1.1e-47 193.7 163 60.7
Phvul.002G192000 Phaseolus vulgaris HOM05D003235 ORTHO05D003863 1.1e-47 193.7 146 69.2
QL10p000641 Quercus lobata HOM05D003235 ORTHO05D003863 1.1e-47 193.7 164 61.6
Hund00347 Selenicereus undatus HOM05D003235 ORTHO05D003863 1.1e-47 193.7 163 60.1
QL11p054430 Quercus lobata HOM05D003235 ORTHO05D003863 1.4e-47 193.4 163 62.0
QL11p054583 Quercus lobata HOM05D003235 ORTHO05D003863 1.4e-47 193.4 163 62.0
arahy.Tifrunner.gnm1.ann1.0G9KRE Arachis hypogaea HOM05D003235 ORTHO05D003863 1.8e-47 193.0 168 60.1
arahy.Tifrunner.gnm1.ann1.S5QGNM Arachis hypogaea HOM05D003235 ORTHO05D003863 1.8e-47 193.0 168 60.1
Cc08_g00700 Coffea canephora HOM05D003235 ORTHO05D003863 1.8e-47 193.0 163 60.7
Prupe.8G176600 Prunus persica HOM05D003235 ORTHO05D003863 1.8e-47 193.0 163 59.5
PGR142G4436 Punica granatum HOM05D003235 ORTHO05D003863 1.8e-47 193.0 163 62.0
PGSC0003DMG400012284 Solanum tuberosum HOM05D003235 ORTHO05D003863 1.8e-47 193.0 163 61.3
CiPaw.06G117700 Carya illinoinensis HOM05D003235 ORTHO05D003863 2.4e-47 192.6 163 61.3
ECA233G5747 Erigeron canadensis HOM05D003235 ORTHO05D003863 2.4e-47 192.6 163 59.5
MD00G1083900 Malus domestica HOM05D003235 ORTHO05D003863 2.4e-47 192.6 163 59.5
Ah.01g007750 Amaranthus hybridus HOM05D003235 ORTHO05D003863 4.0e-47 191.8 163 60.1
TAR624G0177 Trochodendron aralioides HOM05D005511 ORTHO05D006616 4.0e-47 191.8 163 60.7
BcaNung00615 Brassica carinata HOM05D003235 ORTHO05D003863 5.2e-47 191.4 163 60.1
BcaNung00616 Brassica carinata HOM05D003235 ORTHO05D003863 5.2e-47 191.4 163 60.1
A01p03310 Brassica napus HOM05D003235 ORTHO05D003863 5.2e-47 191.4 163 60.1
C01p03650 Brassica napus HOM05D003235 ORTHO05D003863 5.2e-47 191.4 163 60.1
BolC1t00356H Brassica oleracea HOM05D003235 ORTHO05D003863 5.2e-47 191.4 163 60.1
BraA01t00316Z Brassica rapa HOM05D003235 ORTHO05D003863 5.2e-47 191.4 163 60.1
TAR627G1023 Trochodendron aralioides HOM05D003235 ORTHO05D003863 5.2e-47 191.4 163 60.7
CDE05G0254 Ceratophyllum demersum HOM05D003235 ORTHO05D003863 8.9e-47 190.7 163 60.1
Gohir.A03G209200 Gossypium hirsutum HOM05D003235 ORTHO05D003863 8.9e-47 190.7 163 62.0
MD10G1138100 Malus domestica HOM05D003235 ORTHO05D003863 1.2e-46 190.3 163 58.9
Sp7g33030 Schrenkiella parvula HOM05D003235 ORTHO05D003863 1.2e-46 190.3 163 59.5
AT5G60620 Arabidopsis thaliana HOM05D003235 ORTHO05D003863 1.5e-46 189.9 163 60.1
FAN15G0986 Fragaria x ananassa HOM05D003235 ORTHO05D003863 1.5e-46 189.9 163 58.9
Nitab4.5_0000783g0290 Nicotiana tabacum HOM05D003235 ORTHO05D003863 2.0e-46 189.5 160 61.2
Hund17321 Selenicereus undatus HOM05D003235 ORTHO05D003863 2.6e-46 189.1 163 60.1
ClCG02G003570 Citrullus lanatus HOM05D003235 ORTHO05D003863 3.4e-46 188.7 163 60.7
CsaV3_7G001740 Cucumis sativus L. HOM05D003235 ORTHO05D003863 3.4e-46 188.7 163 60.7
FvH4_2g16380 Fragaria vesca HOM05D003235 ORTHO05D003863 3.4e-46 188.7 163 58.3
FAN24G0538 Fragaria x ananassa HOM05D003235 ORTHO05D003863 3.4e-46 188.7 163 58.3
FAN24G1371 Fragaria x ananassa HOM05D003235 ORTHO05D003863 3.4e-46 188.7 163 58.3
PSO541G0846 Papaver somniferum HOM05D003235 ORTHO05D003863 3.4e-46 188.7 163 58.9
SHI05839 Sapria himalayana HOM05D003235 ORTHO05D003863 4.4e-46 188.3 163 58.9
Aqoxy4G02019 Aquilegia oxysepala HOM05D003235 ORTHO05D003863 5.8e-46 188.0 163 58.9
Sed0009233 Sechium edule HOM05D003235 ORTHO05D003863 5.8e-46 188.0 163 60.1
unitig_749.g13984 Utricularia gibba HOM05D003235 ORTHO05D003863 7.6e-46 187.6 163 59.5
BcaB08g36361 Brassica carinata HOM05D003235 ORTHO05D003863 9.9e-46 187.2 163 59.5
BcaC04g19724 Brassica carinata HOM05D003235 ORTHO05D003863 9.9e-46 187.2 163 59.5
A10p17830 Brassica napus HOM05D003235 ORTHO05D003863 9.9e-46 187.2 163 59.5
C09p53360 Brassica napus HOM05D003235 ORTHO05D003863 9.9e-46 187.2 163 59.5
BolC9t58209H Brassica oleracea HOM05D003235 ORTHO05D003863 9.9e-46 187.2 163 59.5
Carub.0008s2130 Capsella rubella HOM05D003235 ORTHO05D003863 9.9e-46 187.2 163 59.5
CDE11G0005 Ceratophyllum demersum HOM05D003235 ORTHO05D003863 9.9e-46 187.2 163 58.9
AUR62012940 Chenopodium quinoa HOM05D003235 ORTHO05D003863 9.9e-46 187.2 163 57.7
MELO3C013265.2 Cucumis melo HOM05D003235 ORTHO05D003863 9.9e-46 187.2 163 59.5
Thhalv10013846m.g Eutrema salsugineum HOM05D003235 ORTHO05D003863 9.9e-46 187.2 163 59.5
FvH4_5g27680 Fragaria vesca HOM05D003235 ORTHO05D003863 9.9e-46 187.2 163 58.9
AL8G37210 Arabidopsis lyrata HOM05D003235 ORTHO05D003863 1.3e-45 186.8 163 59.5
CARHR274300 Cardamine hirsuta HOM05D003235 ORTHO05D003863 1.3e-45 186.8 163 59.5
THA.LOC104819684 Tarenaya hassleriana HOM05D003235 ORTHO05D003863 1.7e-45 186.4 163 58.9
Aa31LG2G14790 Aethionema arabicum HOM05D003235 ORTHO05D003863 2.2e-45 186.0 163 59.5
PSO675G5274 Papaver somniferum HOM05D003235 ORTHO05D003863 2.2e-45 186.0 163 58.3
Sed0003744 Sechium edule HOM05D003235 ORTHO05D003863 2.9e-45 185.7 163 59.5
MBI02_g34309_MAGBIO Magnolia biondii HOM05D003235 ORTHO05D003863 3.8e-45 185.3 163 60.1
Sp6g22200 Schrenkiella parvula HOM05D003235 ORTHO05D003863 3.8e-45 185.3 163 58.9
HanXRQChr14g0458991 Helianthus annuus HOM05D003235 ORTHO05D003863 1.9e-44 183.0 163 57.1
Mapoly0005s0123 Marchantia polymorpha HOM05D003235 ORTHO05D003863 4.2e-44 181.8 166 54.8
vmacro20582 Vaccinium macrocarpon HOM05D003235 ORTHO05D003863 5.4e-44 181.4 201 50.2
ATR1159G019 Amborella trichopoda HOM05D003235 ORTHO05D003863 7.1e-44 181.0 163 57.1
vmacro17286 Vaccinium macrocarpon HOM05D003235 ORTHO05D003863 1.6e-43 179.9 175 56.0
THA.LOC104807394 Tarenaya hassleriana HOM05D003235 ORTHO05D003863 2.7e-43 179.1 163 57.7
HPP92_017619 Vanilla planifolia HOM05D003235 ORTHO05D003863 3.5e-43 178.7 162 56.8
Phvul.002G178901 Phaseolus vulgaris HOM05D003235 ORTHO05D003863 3.0e-42 175.6 82 97.6
PGR042G2488 Punica granatum HOM05D003235 ORTHO05D003863 3.0e-42 175.6 169 55.6
FAN27G1339 Fragaria x ananassa HOM05D003235 ORTHO05D003863 8.7e-42 174.1 154 56.5
SMO164G0177 Selaginella moellendorffii HOM05D003235 ORTHO05D003863 8.7e-42 174.1 166 53.6
Os07g0531600 Oryza sativa ssp. japonica HOM05D003235 ORTHO05D003863 1.5e-41 173.3 162 53.7
MBI18_g41996_MAGBIO Magnolia biondii HOM05D003235 ORTHO05D003863 3.3e-41 172.2 91 86.8
Pp3c11_26030 Physcomitrium patens HOM05D003235 ORTHO05D003863 3.3e-41 172.2 162 54.3
Actinidia26336 Actinidia chinensis HOM05D003235 ORTHO05D003863 5.6e-41 171.4 113 73.5
FAN18G1267 Fragaria x ananassa HOM05D003235 ORTHO05D003863 1.2e-40 170.2 91 84.6
EL10Ac3g05833 Beta vulgaris HOM05D003235 ORTHO05D003863 3.6e-40 168.7 154 57.1
Lj9A405T66 Lonicera japonica HOM05D003235 ORTHO05D003863 4.7e-40 168.3 220 45.5
Zm00001eb396350 Zea mays HOM05D003235 ORTHO05D003863 6.2e-40 167.9 162 51.9
BraA10t43862Z Brassica rapa HOM05D003235 ORTHO05D003863 1.4e-39 166.8 91 82.4
PGSC0003DMG400018636 Solanum tuberosum HOM05D003235 ORTHO05D003863 1.4e-39 166.8 89 83.1
Aqoxy2G01314 Aquilegia oxysepala HOM05D003235 ORTHO05D003863 3.1e-39 165.6 119 66.4
EL10Ac3g05834 Beta vulgaris HOM05D003235 ORTHO05D003863 4.0e-39 165.2 154 55.8
Lsat_1_v5_gn_7_116021 Lactuca sativa HOM05D003235 ORTHO05D003863 4.0e-39 165.2 149 59.7
HPP92_011716 Vanilla planifolia HOM05D003235 ORTHO05D003863 1.5e-38 163.3 91 80.2
Eucgr.G01836 Eucalyptus grandis HOM05D003235 ORTHO05D003863 3.8e-37 158.7 163 52.8
Eucgr.G01837 Eucalyptus grandis HOM05D003235 ORTHO05D003863 5.4e-36 154.8 95 71.6
AagrBONN_evm.TU.Sc2ySwM_344.5027 Anthoceros agrestis HOM05D003235 ORTHO05D003863 7.8e-35 151.0 145 52.4
EL10Ac9g21270 Beta vulgaris HOM05D003235 ORTHO05D003863 1.7e-34 149.8 149 53.7
Phvul.002G192600 Phaseolus vulgaris HOM05D003235 ORTHO05D017489 7.3e-33 144.4 91 75.8
Pp3c14_5980 Physcomitrium patens HOM05D003235 ORTHO05D003863 9.6e-33 144.1 91 72.5
MBI02_g46599_MAGBIO Magnolia biondii HOM05D003235 ORTHO05D003863 4.8e-32 141.7 74 86.5
MCO05G004 Micromonas commoda HOM05D003235 ORTHO05D003863 1.8e-31 139.8 97 61.9
Nn1g03654 Nelumbo nucifera HOM05D003235 ORTHO05D003863 9.0e-31 137.5 130 56.9
FAN04G0585 Fragaria x ananassa HOM05D003235 ORTHO05D003863 1.2e-30 137.1 130 55.4
RhsimUnG0142800 Rhododendron simsii HOM05D003235 ORTHO05D003863 5.8e-30 134.8 68 89.7
RcHm_v2.0_Chr7g0219331 Rosa chinensis HOM05D003235 ORTHO05D003863 1.9e-28 129.8 84 72.6
CBR_g30644 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-27 127.1 77 68.8
Cre06.g273250 Chlamydomonas reinhardtii HOM05D003235 ORTHO05D003863 1.6e-27 126.7 152 42.1
EL10Ac3g05050 Beta vulgaris HOM05D003235 ORTHO05D003863 1.8e-26 123.2 75 77.3
Mapoly0113s0056 Marchantia polymorpha HOM05D003235 ORTHO05D003863 1.8e-26 123.2 130 51.5
HanXRQChr08g0236381 Helianthus annuus HOM05D003235 ORTHO05D003863 6.7e-26 121.3 141 49.6
RhsimUnG0171100 Rhododendron simsii HOM05D003235 ORTHO05D003863 5.6e-25 118.2 120 51.7
FAN13G0036 Fragaria x ananassa HOM05D003235 ORTHO05D003863 8.1e-24 114.4 58 86.2
PRCOL_00006733 Prasinoderma coloniale HOM05D003235 ORTHO05D003863 5.3e-23 111.7 163 37.4
SGA_v2.0_scaffold80G25821 Striga asiatica HOM05D003235 ORTHO05D003863 3.0e-18 95.9 161 37.9
AUR62027140 Chenopodium quinoa HOM05D003235 ORTHO05D003863 1.9e-17 93.2 163 36.2
Cc08_g00720 Coffea canephora HOM05D003235 ORTHO05D003863 6.2e-16 88.2 80 60.0
TPR.G40684 Trifolium pratense HOM05D003235 ORTHO05D003863 3.4e-14 82.4 63 66.7
AL6G10680 Arabidopsis lyrata HOM05D003235 ORTHO05D015367 5.8e-14 81.6 46 73.9
AL8G18960 Arabidopsis lyrata HOM05D003235 ORTHO05D015367 5.8e-14 81.6 46 73.9
vmacro02324 Vaccinium macrocarpon HOM05D003235 ORTHO05D003863 7.9e-11 71.2 40 75.0
SEGI_35719 Sequoiadendron giganteum HOM05D003235 ORTHO05D003863 2.4e-07 59.7 90 42.2
vmacro20801 Vaccinium macrocarpon HOM05D003235 ORTHO05D003863 2.4e-07 59.7 91 40.7
QL10p050755 Quercus lobata HOM05D001043 ORTHO05D006432 1.2e-06 57.4 40 65.0


User provided reference genes

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