Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G188200 Phaseolus vulgaris HOM05D007025 ORTHO05D008862 2.7e-39 164.9 81 100.0
Phvul.007G101100 Phaseolus vulgaris HOM05D007025 ORTHO05D008862 3.8e-38 161.0 81 98.8
Glyma.08G088800 Glycine max HOM05D007025 ORTHO05D008862 5.2e-35 150.6 81 88.9
Glyma.05G134100 Glycine max HOM05D007025 ORTHO05D008862 1.2e-34 149.4 81 87.7
arahy.Tifrunner.gnm1.ann1.UND1EB Arachis hypogaea HOM05D007025 ORTHO05D008862 6.3e-33 143.7 81 85.2
Medtr4g094750 Medicago truncatula HOM05D007025 ORTHO05D008862 1.1e-32 142.9 81 84.0
Psat7g087480 Pisum sativum HOM05D007025 ORTHO05D008862 1.1e-32 142.9 81 84.0
arahy.Tifrunner.gnm1.ann1.XVFR0N Arachis hypogaea HOM05D007025 ORTHO05D008862 1.4e-32 142.5 81 84.0
Lj1g0011371 Lotus japonicus HOM05D007025 ORTHO05D008862 5.9e-31 137.1 81 81.5
Lj4g0013158 Lotus japonicus HOM05D007025 ORTHO05D008862 5.9e-31 137.1 81 81.5
Lalb_Chr12g0209151 Lupinus albus HOM05D007025 ORTHO05D008862 1.5e-29 132.5 81 80.2
Lalb_Chr12g0209181 Lupinus albus HOM05D007025 ORTHO05D008862 4.3e-29 131.0 81 79.0
TPR.G23830 Trifolium pratense HOM05D007025 ORTHO05D008862 4.3e-29 131.0 79 81.0
CiPaw.09G091100 Carya illinoinensis HOM05D007025 ORTHO05D008862 1.2e-28 129.4 81 75.3
CiPaw.13G095900 Carya illinoinensis HOM05D007025 ORTHO05D008862 6.1e-28 127.1 81 74.1
Prupe.6G079900 Prunus persica HOM05D007025 ORTHO05D008862 6.1e-28 127.1 81 72.8
Hma1.2p1_1888F.1_g306550 Hydrangea macrophylla HOM05D007025 ORTHO05D008862 4.0e-27 124.4 81 71.6
PGR102G0249 Punica granatum HOM05D007025 ORTHO05D008862 4.0e-27 124.4 81 71.6
CiPaw.14G069900 Carya illinoinensis HOM05D007025 ORTHO05D008862 1.2e-26 122.9 81 70.4
MELO3C026555.2 Cucumis melo HOM05D007025 ORTHO05D008862 1.5e-26 122.5 81 69.1
Nitab4.5_0004078g0030 Nicotiana tabacum HOM05D007025 ORTHO05D008862 1.5e-26 122.5 81 71.6
QL06p002232 Quercus lobata HOM05D007025 ORTHO05D008862 1.5e-26 122.5 80 70.0
Nitab4.5_0001800g0060 Nicotiana tabacum HOM05D007025 ORTHO05D008862 2.0e-26 122.1 81 71.6
Solyc11g066070.2 Solanum lycopersicum HOM05D007025 ORTHO05D008862 2.0e-26 122.1 81 71.6
Sopen11g025810 Solanum pennellii HOM05D007025 ORTHO05D008862 2.0e-26 122.1 81 71.6
PGSC0003DMG400000442 Solanum tuberosum HOM05D007025 ORTHO05D008862 2.0e-26 122.1 81 71.6
Gohir.D03G127100 Gossypium hirsutum HOM05D007025 ORTHO05D008862 2.6e-26 121.7 81 72.8
Gorai.003G133500 Gossypium raimondii HOM05D007025 ORTHO05D008862 2.6e-26 121.7 81 72.8
Haze_24077 Corylus avellana HOM05D007025 ORTHO05D008862 3.4e-26 121.3 80 70.0
QL10p005425 Quercus lobata HOM05D007025 ORTHO05D008862 3.4e-26 121.3 80 70.0
ClCG08G009640 Citrullus lanatus HOM05D007025 ORTHO05D008862 4.4e-26 120.9 81 66.7
Ciclev10003169m.g Citrus clementina HOM05D007025 ORTHO05D008862 4.4e-26 120.9 81 69.1
Cfa003375 Carpinus fangiana HOM05D007025 ORTHO05D008862 5.7e-26 120.6 81 70.4
Peaxi162Scf00406g00059 Petunia axillaris HOM05D007025 ORTHO05D008862 7.5e-26 120.2 81 69.1
Sed0024062 Sechium edule HOM05D007025 ORTHO05D008862 7.5e-26 120.2 81 69.1
Aqoxy7G01971 Aquilegia oxysepala HOM05D007025 ORTHO05D008862 9.8e-26 119.8 81 71.6
CAN.G764.4 Capsicum annuum HOM05D007025 ORTHO05D008862 9.8e-26 119.8 81 69.1
Aqoxy1G00724 Aquilegia oxysepala HOM05D007025 ORTHO05D008862 1.3e-25 119.4 81 70.4
CANSAT54G1063 Cannabis sativa HOM05D007025 ORTHO05D008862 1.3e-25 119.4 81 70.4
Gohir.A03G041000 Gossypium hirsutum HOM05D007025 ORTHO05D008862 1.3e-25 119.4 81 71.6
CSS0049041 Camellia sinensis var. sinensis HOM05D007025 ORTHO05D008862 1.7e-25 119.0 81 67.9
TWI79G0521 Tripterygium wilfordii HOM05D007025 ORTHO05D008862 1.7e-25 119.0 81 67.9
CsaV3_6G031770 Cucumis sativus L. HOM05D007025 ORTHO05D008862 2.2e-25 118.6 81 66.7
Cc01_g12710 Coffea canephora HOM05D007025 ORTHO05D008862 3.7e-25 117.9 81 67.9
Eucgr.J02059 Eucalyptus grandis HOM05D007025 ORTHO05D008862 4.9e-25 117.5 81 67.9
RcHm_v2.0_Chr5g0006711 Rosa chinensis HOM05D007025 ORTHO05D008862 4.9e-25 117.5 81 71.6
RcHm_v2.0_Chr5g0063941 Rosa chinensis HOM05D007025 ORTHO05D008862 4.9e-25 117.5 81 71.6
Solyc06g076010.3 Solanum lycopersicum HOM05D007025 ORTHO05D008862 4.9e-25 117.5 81 69.1
Sopen06g032420 Solanum pennellii HOM05D007025 ORTHO05D008862 4.9e-25 117.5 81 69.1
TAR374G1462 Trochodendron aralioides HOM05D007025 ORTHO05D008862 4.9e-25 117.5 81 66.7
vmacro00530 Vaccinium macrocarpon HOM05D007025 ORTHO05D008862 4.9e-25 117.5 81 69.1
Duzib168G1407 Durio zibethinus HOM05D007025 ORTHO05D008862 6.4e-25 117.1 81 69.1
FvH4_3g35770 Fragaria vesca HOM05D007025 ORTHO05D008862 8.3e-25 116.7 81 71.6
FAN11G3513 Fragaria x ananassa HOM05D007025 ORTHO05D008862 8.3e-25 116.7 81 71.6
FAN16G3493 Fragaria x ananassa HOM05D007025 ORTHO05D008862 8.3e-25 116.7 81 71.6
FAN21G1635 Fragaria x ananassa HOM05D007025 ORTHO05D008862 8.3e-25 116.7 81 71.6
FAN25G2181 Fragaria x ananassa HOM05D007025 ORTHO05D008862 8.3e-25 116.7 81 71.6
Manes.04G033800 Manihot esculenta HOM05D007025 ORTHO05D008862 1.4e-24 115.9 81 66.7
Thecc.09G323800 Theobroma cacao HOM05D007025 ORTHO05D008862 1.4e-24 115.9 81 65.4
EL10Ac7g15997 Beta vulgaris HOM05D007025 ORTHO05D008862 1.8e-24 115.5 81 67.9
GSVIVG01024988001 Vitis vinifera HOM05D007025 ORTHO05D008862 3.2e-24 114.8 81 64.2
Atru.chr3.3859 Acer truncatum HOM05D007025 ORTHO05D008862 5.4e-24 114.0 81 64.2
Cpa.g.sc840.2 Carica papaya HOM05D007025 ORTHO05D008862 1.2e-23 112.8 81 63.0
COL.COLO4_20470 Corchorus olitorius HOM05D007025 ORTHO05D008862 1.6e-23 112.5 81 64.2
CARHR036850 Cardamine hirsuta HOM05D007025 ORTHO05D008862 2.0e-23 112.1 82 64.6
Hund04979 Selenicereus undatus HOM05D007025 ORTHO05D008862 4.6e-23 110.9 81 66.7
Lsat_1_v5_gn_2_83821 Lactuca sativa HOM05D007025 ORTHO05D008862 5.9e-23 110.5 81 63.0
THA.LOC104810785 Tarenaya hassleriana HOM05D007025 ORTHO05D008862 1.0e-22 109.8 81 61.7
Carub.0001s3607 Capsella rubella HOM05D007025 ORTHO05D008862 1.3e-22 109.4 81 61.7
Lsat_1_v5_gn_5_79400 Lactuca sativa HOM05D007025 ORTHO05D008862 1.3e-22 109.4 81 61.7
Nn5g26960 Nelumbo nucifera HOM05D007025 ORTHO05D008862 1.3e-22 109.4 82 65.9
AL1G53430 Arabidopsis lyrata HOM05D007025 ORTHO05D008862 1.7e-22 109.0 81 63.0
AT1G47278 Arabidopsis thaliana HOM05D007025 ORTHO05D008862 1.7e-22 109.0 81 63.0
Rhsim09G0044100 Rhododendron simsii HOM05D007025 ORTHO05D008862 1.7e-22 109.0 81 63.0
SGA_v2.0_scaffold118G32439 Striga asiatica HOM05D007025 ORTHO05D008862 1.7e-22 109.0 82 64.6
unitig_749.g14331 Utricularia gibba HOM05D007025 ORTHO05D008862 1.7e-22 109.0 81 61.7
Aa31sc152G30 Aethionema arabicum HOM05D007025 ORTHO05D008862 8.6e-22 106.7 81 60.5
ECA238G2407 Erigeron canadensis HOM05D007025 ORTHO05D008862 5.6e-21 104.0 81 58.0
Thhalv10011908m.g Eutrema salsugineum HOM05D007025 ORTHO05D008862 5.6e-21 104.0 81 60.5
ATR0800G159 Amborella trichopoda HOM05D007025 ORTHO05D008862 7.3e-21 103.6 79 62.0
Sp1g34420 Schrenkiella parvula HOM05D007025 ORTHO05D008862 7.3e-21 103.6 81 61.7
Migut.C01196 Erythranthe guttata HOM05D007025 ORTHO05D008862 2.1e-20 102.1 81 60.5
BcaB04g17532 Brassica carinata HOM05D007025 ORTHO05D008862 2.8e-20 101.7 81 60.5
BcaC07g37223 Brassica carinata HOM05D007025 ORTHO05D008862 2.8e-20 101.7 81 60.5
A08p05760 Brassica napus HOM05D007025 ORTHO05D008862 2.8e-20 101.7 81 60.5
C08p06430 Brassica napus HOM05D007025 ORTHO05D008862 2.8e-20 101.7 81 60.5
BraA08t32579Z Brassica rapa HOM05D007025 ORTHO05D008862 2.8e-20 101.7 81 60.5
CDE11G0504 Ceratophyllum demersum HOM05D007025 ORTHO05D008862 8.9e-19 96.7 81 59.3
PSO384G2653 Papaver somniferum HOM05D007025 ORTHO05D008862 1.2e-18 96.3 81 54.3
SalBow5G5439 Salvia bowleyana HOM05D007025 ORTHO05D008862 3.7e-17 91.3 76 56.6
Os03g0276700 Oryza sativa ssp. japonica HOM05D007025 ORTHO05D008862 4.1e-16 87.8 79 51.9
PGSC0003DMG400030317 Solanum tuberosum HOM05D007025 ORTHO05D008862 7.0e-16 87.0 57 66.7
SHI05954 Sapria himalayana HOM05D007025 ORTHO05D008862 9.2e-16 86.7 78 50.0
Os08g0422300 Oryza sativa ssp. japonica HOM05D007025 ORTHO05D008862 1.2e-15 86.3 79 51.9
MBI05_g06554_MAGBIO Magnolia biondii HOM05D007025 ORTHO05D008862 7.8e-15 83.6 72 50.0
Lj1A680T12 Lonicera japonica HOM05D007025 ORTHO05D008862 1.3e-14 82.8 59 66.1
unitig_26.g9279 Utricularia gibba HOM05D007025 ORTHO05D008862 3.9e-14 81.3 57 63.2
FAN24G0628 Fragaria x ananassa HOM05D007025 ORTHO05D008862 1.1e-13 79.7 63 68.3
Potri.009G029400 Populus trichocarpa HOM05D007025 ORTHO05D008862 1.5e-13 79.3 81 48.1
MD11G1111500 Malus domestica HOM05D007025 ORTHO05D008862 2.5e-13 78.6 59 69.5
MD02G1271300 Malus domestica HOM05D007025 ORTHO05D008862 9.5e-13 76.6 59 67.8
HanXRQChr14g0439311 Helianthus annuus HOM05D007025 ORTHO05D008862 1.1e-11 73.2 66 50.0
BolC8t47490H Brassica oleracea HOM05D007025 ORTHO05D008862 1.8e-11 72.4 57 57.9
Pp3c21_6850 Physcomitrium patens HOM05D007025 ORTHO05D008862 3.1e-11 71.6 80 47.5
Mapoly0032s0020 Marchantia polymorpha HOM05D007025 ORTHO05D008862 6.8e-11 70.5 80 43.8
AagrBONN_evm.TU.Sc2ySwM_344.5329 Anthoceros agrestis HOM05D007025 ORTHO05D008862 1.2e-10 69.7 77 46.8
AUR62001808 Chenopodium quinoa HOM05D002150 ORTHO05D002191 3.7e-09 64.7 45 66.7
AUR62009594 Chenopodium quinoa HOM05D007025 ORTHO05D002191 3.7e-09 64.7 45 66.7
MD02G1271100 Malus domestica HOM05D007025 ORTHO05D008862 1.6e-07 59.3 73 42.5
SGA_v2.0_scaffold24G10508 Striga asiatica HOM05D007025 ORTHO05D008862 1.3e-06 56.2 37 70.3
COL.COLO4_18491 Corchorus olitorius HOM05D007025 ORTHO05D008862 8.6e-06 53.5 77 41.6


User provided reference genes

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