Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G180600 Phaseolus vulgaris HOM05D008821 ORTHO05D010464 8.9e-78 293.5 146 100.0
Glyma.08G098600 Glycine max HOM05D008821 ORTHO05D010464 3.2e-43 178.7 140 67.9
Glyma.05G142600 Glycine max HOM05D008821 ORTHO05D010464 2.1e-42 176.0 137 69.3
Lj5g0007792 Lotus japonicus HOM05D008821 ORTHO05D010464 1.3e-36 156.8 136 64.7
Lj4g0018254 Lotus japonicus HOM05D008821 ORTHO05D010464 7.2e-35 151.0 136 63.2
Medtr5g077560 Medicago truncatula HOM05D008821 ORTHO05D010464 1.5e-32 143.3 131 63.4
TPR.G9571 Trifolium pratense HOM05D008821 ORTHO05D010464 2.2e-31 139.4 139 58.3
Psat7g081560 Pisum sativum HOM05D008821 ORTHO05D010464 2.6e-29 132.5 123 58.5
Lalb_Chr12g0196061 Lupinus albus HOM05D008821 ORTHO05D010464 2.5e-27 125.9 127 54.3
arahy.Tifrunner.gnm1.ann1.SDZ0GZ Arachis hypogaea HOM05D008821 ORTHO05D010464 2.0e-21 106.3 135 47.4
arahy.Tifrunner.gnm1.ann1.ZX7BQ2 Arachis hypogaea HOM05D000116 ORTHO05D010464 1.7e-20 103.2 114 50.0
Nn4g26609 Nelumbo nucifera HOM05D008821 ORTHO05D010464 1.7e-20 103.2 139 41.7
TAR460G0006 Trochodendron aralioides HOM05D008821 ORTHO05D010464 2.9e-20 102.4 135 45.2
Thecc.06G147000 Theobroma cacao HOM05D008821 ORTHO05D010464 5.0e-20 101.7 135 45.2
ClCG01G024780 Citrullus lanatus HOM05D008821 ORTHO05D010464 4.2e-19 98.6 96 57.3
CiPaw.09G121300 Carya illinoinensis HOM05D008821 ORTHO05D010464 3.6e-18 95.5 131 45.0
MELO3C007119.2 Cucumis melo HOM05D008821 ORTHO05D010464 6.1e-18 94.7 96 56.2
CsaV3_6G051900 Cucumis sativus L. HOM05D000116 ORTHO05D010464 6.1e-18 94.7 90 60.0
Manes.15G123932 Manihot esculenta HOM05D008821 ORTHO05D010464 3.9e-17 92.0 137 43.8
RcHm_v2.0_Chr5g0014511 Rosa chinensis HOM05D008821 ORTHO05D010464 8.8e-17 90.9 146 45.2
Atru.chr10.1160 Acer truncatum HOM05D008821 ORTHO05D010464 1.1e-16 90.5 148 40.5
FAN21G0539 Fragaria x ananassa HOM05D008821 ORTHO05D010464 1.5e-16 90.1 141 44.7
FvH4_3g05210 Fragaria vesca HOM05D008821 ORTHO05D010464 2.6e-16 89.4 141 44.7
FAN16G1747 Fragaria x ananassa HOM05D008821 ORTHO05D010464 2.2e-15 86.3 141 44.0
FAN16G2928 Fragaria x ananassa HOM05D008821 ORTHO05D010464 2.2e-15 86.3 141 44.0
Prupe.4G083800 Prunus persica HOM05D008821 ORTHO05D010464 3.7e-15 85.5 154 40.3
Dinv32224 Davidia involucrata HOM05D000116 ORTHO05D000133 6.3e-15 84.7 102 48.0
MBI18_g11239_MAGBIO Magnolia biondii HOM05D008821 ORTHO05D010464 1.1e-14 84.0 92 51.1
Aqoxy1G01677 Aquilegia oxysepala HOM05D008821 ORTHO05D010464 2.4e-14 82.8 135 40.7
PSO541G6549 Papaver somniferum HOM05D008821 ORTHO05D010464 4.1e-14 82.0 139 39.6
Sed0011418 Sechium edule HOM05D008821 ORTHO05D010464 3.5e-13 79.0 102 43.1
CSS0030437 Camellia sinensis var. sinensis HOM05D008821 ORTHO05D010464 3.8e-12 75.5 118 42.4
Gohir.D06G143700 Gossypium hirsutum HOM05D008821 ORTHO05D010464 8.5e-12 74.3 111 42.3
Gohir.A06G139000 Gossypium hirsutum HOM05D008821 ORTHO05D010464 1.5e-11 73.6 122 41.0
Gorai.010G167500 Gossypium raimondii HOM05D008821 ORTHO05D010464 1.5e-11 73.6 111 42.3
Oeu007934.1 Olea europaea HOM05D008821 ORTHO05D010464 1.2e-10 70.5 142 37.3
Oeu007936.1 Olea europaea HOM05D008821 ORTHO05D010464 1.2e-10 70.5 142 37.3
Sc24g0001660 Simmondsia chinensis HOM05D008821 ORTHO05D010464 1.0e-09 67.4 119 36.1
Haze_05636 Corylus avellana HOM05D008821 ORTHO05D010464 1.5e-08 63.5 77 48.1
Cfa000919 Carpinus fangiana HOM05D008821 ORTHO05D010464 9.7e-08 60.8 74 45.9
ATR1098G131 Amborella trichopoda HOM05D008821 ORTHO05D010464 6.3e-07 58.2 88 38.6
AL7G35960 Arabidopsis lyrata HOM05D010864 ORTHO05D010464 1.4e-06 57.0 104 36.5
AT4G18395 Arabidopsis thaliana HOM05D010864 ORTHO05D010464 5.3e-06 55.1 104 35.6
MBI02_g21430_MAGBIO Magnolia biondii HOM05D008821 ORTHO05D010464 5.3e-06 55.1 71 43.7
Carub.0007s2287 Capsella rubella HOM05D010864 ORTHO05D010464 7.0e-06 54.7 104 35.6


User provided reference genes

Program Settings