Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G179700 Phaseolus vulgaris HOM05D004890 ORTHO05D005869 0.0e+00 3735.3 1901 100.0
VMungo0251G2716 Vigna mungo HOM05D004890 ORTHO05D005869 0.0e+00 3134.7 1918 85.1
Glyma.08G099200 Glycine max HOM05D004890 ORTHO05D005869 0.0e+00 2786.9 1936 76.2
Lj3g0013742 Lotus japonicus HOM05D004890 ORTHO05D005869 0.0e+00 2405.2 1931 67.5
Psat7g178440 Pisum sativum HOM05D004890 ORTHO05D005869 0.0e+00 2343.9 1935 65.3
Medtr4g075520 Medicago truncatula HOM05D004890 ORTHO05D005869 0.0e+00 2319.7 1944 64.5
Ca_18997_v3 Cicer arietinum L. HOM05D004890 ORTHO05D005869 0.0e+00 2318.1 1934 65.1
TPR.G17158 Trifolium pratense HOM05D004890 ORTHO05D005869 0.0e+00 2282.3 1934 64.4
Lalb_Chr01g0001291 Lupinus albus HOM05D004890 ORTHO05D005869 0.0e+00 2236.1 1935 62.7
arahy.Tifrunner.gnm1.ann1.T6KP8R Arachis hypogaea HOM05D004890 ORTHO05D005869 0.0e+00 2118.2 1939 60.2
arahy.Tifrunner.gnm1.ann1.03J21L Arachis hypogaea HOM05D004890 ORTHO05D005869 0.0e+00 2088.2 1914 60.0
CiPaw.05G076600 Carya illinoinensis HOM05D004890 ORTHO05D005869 0.0e+00 1515.0 1995 45.5
QL11p047502 Quercus lobata HOM05D004890 ORTHO05D005869 0.0e+00 1509.2 1986 45.1
MD05G1115300 Malus domestica HOM05D004890 ORTHO05D005869 0.0e+00 1492.6 1975 45.1
Atru.chr5.3215 Acer truncatum HOM05D004890 ORTHO05D005869 0.0e+00 1424.8 1992 43.1
Haze_02203 Corylus avellana HOM05D004890 ORTHO05D005869 0.0e+00 1395.2 2009 43.1
TWI79G0196 Tripterygium wilfordii HOM05D004890 ORTHO05D005869 0.0e+00 1393.6 1999 42.8
Thecc.02G067700 Theobroma cacao HOM05D004890 ORTHO05D005869 0.0e+00 1359.0 1999 41.9
RcHm_v2.0_Chr2g0118221 Rosa chinensis HOM05D004890 ORTHO05D005869 0.0e+00 1342.4 2019 41.8
Potri.004G167600 Populus trichocarpa HOM05D004890 ORTHO05D005869 0.0e+00 1339.7 1996 41.9
FvH4_2g02080 Fragaria vesca HOM05D004890 ORTHO05D005869 0.0e+00 1330.9 1966 41.8
FAN20G1645 Fragaria x ananassa HOM05D004890 ORTHO05D005869 0.0e+00 1318.5 1966 41.3
FAN15G0743 Fragaria x ananassa HOM05D004890 ORTHO05D005869 0.0e+00 1317.8 1965 41.6
TAR628G0176 Trochodendron aralioides HOM05D004890 ORTHO05D005869 0.0e+00 1315.8 2005 41.5
Duzib052G0882 Durio zibethinus HOM05D004890 ORTHO05D005869 0.0e+00 1310.0 1990 41.2
CANSAT54G0305 Cannabis sativa HOM05D004890 ORTHO05D005869 0.0e+00 1308.9 1984 41.4
Sabra04G0112400 Salix brachista HOM05D004890 ORTHO05D005869 0.0e+00 1290.8 1989 40.7
Manes.05G200700 Manihot esculenta HOM05D004890 ORTHO05D005869 0.0e+00 1283.1 2002 41.4
ClCG02G011430 Citrullus lanatus HOM05D004890 ORTHO05D005869 0.0e+00 1278.1 1973 40.2
Ciclev10030126m.g Citrus clementina HOM05D004890 ORTHO05D005869 0.0e+00 1272.3 1972 41.0
Actinidia20483 Actinidia chinensis HOM05D004890 ORTHO05D005869 0.0e+00 1265.0 1979 39.8
Sed0011290 Sechium edule HOM05D004890 ORTHO05D005869 0.0e+00 1263.8 1973 40.1
Gorai.002G192700 Gossypium raimondii HOM05D004890 ORTHO05D005869 0.0e+00 1259.6 1994 40.3
Gohir.A01G163400 Gossypium hirsutum HOM05D004890 ORTHO05D005869 0.0e+00 1255.0 1993 40.2
CsaV3_2G015660 Cucumis sativus L. HOM05D004890 ORTHO05D005869 0.0e+00 1249.2 1976 39.5
Gohir.D01G155500 Gossypium hirsutum HOM05D004890 ORTHO05D005869 0.0e+00 1248.0 1994 40.0
FAN24G3218 Fragaria x ananassa HOM05D004890 ORTHO05D005869 0.0e+00 1237.6 1909 40.6
GSVIVG01024104001 Vitis vinifera HOM05D004890 ORTHO05D005869 0.0e+00 1228.0 1945 40.1
MELO3C020778.2 Cucumis melo HOM05D004890 ORTHO05D005869 0.0e+00 1227.2 1955 38.7
Rhsim11G0187500 Rhododendron simsii HOM05D004890 ORTHO05D005869 0.0e+00 1220.3 1974 38.8
Nn5g30145 Nelumbo nucifera HOM05D004890 ORTHO05D005869 0.0e+00 1177.2 2008 38.6
PGR042G1730 Punica granatum HOM05D004890 ORTHO05D005869 0.0e+00 1176.4 1986 38.8
Dinv04970 Davidia involucrata HOM05D004890 ORTHO05D005869 0.0e+00 1079.3 1746 39.9
Prupe.8G159900 Prunus persica HOM05D004890 ORTHO05D005869 1.2e-310 1070.8 1524 43.1
Nitab4.5_0010816g0010 Nicotiana tabacum HOM05D004890 ORTHO05D005869 7.3e-305 1051.6 1979 36.1
Nitab4.5_0000956g0200 Nicotiana tabacum HOM05D004890 ORTHO05D005869 1.4e-303 1047.3 2029 35.6
HanXRQChr05g0137581 Helianthus annuus HOM05D004890 ORTHO05D005869 6.8e-303 1045.0 1933 35.8
CAN.G647.2 Capsicum annuum HOM05D004890 ORTHO05D005869 8.9e-303 1044.6 1988 36.4
Cc02_g16570 Coffea canephora HOM05D004890 ORTHO05D005869 8.9e-303 1044.6 1976 35.5
Peaxi162Scf00538g00518 Petunia axillaris HOM05D004890 ORTHO05D005869 9.9e-302 1041.2 1986 35.9
Lsat_1_v5_gn_8_125620 Lactuca sativa HOM05D004890 ORTHO05D005869 4.9e-301 1038.9 1940 36.0
Solyc10g054860.2 Solanum lycopersicum HOM05D004890 ORTHO05D005869 8.3e-301 1038.1 1964 35.9
Sopen10g024780 Solanum pennellii HOM05D004890 ORTHO05D005869 7.1e-300 1035.0 1979 36.0
vmacro02247 Vaccinium macrocarpon HOM05D004890 ORTHO05D005869 1.2e-296 1024.2 1959 35.7
Sc18g0006690 Simmondsia chinensis HOM05D004890 ORTHO05D005869 8.9e-295 1018.1 1969 35.4
THA.LOC104811117 Tarenaya hassleriana HOM05D004890 ORTHO05D005869 5.8e-294 1015.4 1977 34.5
MSTRG.20033 Avicennia marina HOM05D004890 ORTHO05D005869 8.4e-293 1011.5 1986 36.4
ECA233G1715 Erigeron canadensis HOM05D004890 ORTHO05D005869 2.4e-292 1010.0 1953 36.1
FAN27G2536 Fragaria x ananassa HOM05D004890 ORTHO05D005869 3.5e-291 1006.1 1737 38.2
Hund00048 Selenicereus undatus HOM05D004890 ORTHO05D005869 1.7e-290 1003.8 1945 35.3
Aqoxy2G01603 Aquilegia oxysepala HOM05D004890 ORTHO05D005869 2.3e-290 1003.4 1999 35.4
EL10Ac9g21450 Beta vulgaris HOM05D004890 ORTHO05D005869 5.3e-287 992.3 1986 34.9
Sp7g28010 Schrenkiella parvula HOM05D004890 ORTHO05D005869 4.2e-276 956.1 1952 34.2
DCAR_017255 Daucus carota HOM05D004890 ORTHO05D005869 9.6e-273 944.9 1952 34.7
Aa31LG2G20400 Aethionema arabicum HOM05D004890 ORTHO05D005869 4.8e-272 942.6 1923 34.4
AL7G22040 Arabidopsis lyrata HOM05D004890 ORTHO05D005869 9.3e-268 928.3 1955 33.9
AT4G30150 Arabidopsis thaliana HOM05D004890 ORTHO05D005869 3.5e-267 926.4 1963 33.9
Carub.0007s1046 Capsella rubella HOM05D004890 ORTHO05D005869 7.9e-267 925.2 1972 33.6
Thhalv10024190m.g Eutrema salsugineum HOM05D004890 ORTHO05D005869 1.3e-266 924.5 1943 33.9
PSO675G7923 Papaver somniferum HOM05D004890 ORTHO05D005869 2.8e-264 916.8 1974 33.8
AUR62013096 Chenopodium quinoa HOM05D004890 ORTHO05D005869 2.0e-262 910.6 1972 34.0
CARHR238050 Cardamine hirsuta HOM05D004890 ORTHO05D005869 5.8e-262 909.1 1955 33.9
Lj5C185G17 Lonicera japonica HOM05D004890 ORTHO05D005869 7.6e-262 908.7 1774 34.8
PSO541G5249 Papaver somniferum HOM05D004890 ORTHO05D005869 2.2e-261 907.1 1977 33.7
SGA_v2.0_scaffold58G20451 Striga asiatica HOM05D004890 ORTHO05D005869 1.4e-260 904.4 1953 33.8
Migut.B00164 Erythranthe guttata HOM05D004890 ORTHO05D005869 9.3e-260 901.7 1958 33.9
RcHm_v2.0_Chr6g0245311 Rosa chinensis HOM05D004890 ORTHO05D005869 2.3e-258 897.1 1357 41.6
Eucgr.G01753 Eucalyptus grandis HOM05D004890 ORTHO05D005869 2.2e-256 890.6 1969 33.0
Cpa.g.sc37.197 Carica papaya HOM05D004890 ORTHO05D005869 3.8e-253 879.8 1936 32.8
BcaC09g51795 Brassica carinata HOM05D004890 ORTHO05D005869 3.2e-252 876.7 1932 33.1
C01p08940 Brassica napus HOM05D004890 ORTHO05D005869 3.2e-252 876.7 1932 33.1
BolC1t00885H Brassica oleracea HOM05D004890 ORTHO05D005869 5.5e-252 875.9 1933 33.1
BraA01t00745Z Brassica rapa HOM05D004890 ORTHO05D005869 7.2e-252 875.5 1934 33.2
A01p08000 Brassica napus HOM05D004890 ORTHO05D005869 1.0e-250 871.7 1932 33.1
BcaNung04415 Brassica carinata HOM05D004890 ORTHO05D005869 1.1e-241 841.6 1952 32.3
SalBow6G6075 Salvia bowleyana HOM05D004890 ORTHO05D005869 2.6e-241 840.5 1966 32.1
Glyma.08G231200 Glycine max HOM05D004890 ORTHO05D005869 7.0e-231 805.8 556 76.4
ATR0810G151 Amborella trichopoda HOM05D004890 ORTHO05D005869 1.3e-229 801.6 2084 30.8
AUR62010102 Chenopodium quinoa HOM05D004890 ORTHO05D005869 2.9e-221 773.9 1665 34.4
Zm00001eb007680 Zea mays HOM05D004890 ORTHO05D005869 1.3e-205 721.8 1981 30.9
CDE05G0022 Ceratophyllum demersum HOM05D004890 ORTHO05D005869 1.1e-191 675.6 1776 30.7
PSO210G5131 Papaver somniferum HOM05D004890 ORTHO05D005869 3.0e-181 641.0 1694 31.8
Ah.01g022450 Amaranthus hybridus HOM05D004890 ORTHO05D005869 1.3e-176 625.5 1470 33.1
Oeu010054.2 Olea europaea HOM05D004890 ORTHO05D005869 5.3e-162 577.0 1250 34.2
RcHm_v2.0_Chr6g0245571 Rosa chinensis HOM05D004890 ORTHO05D005869 9.3e-159 566.2 1938 27.2
SHI05677 Sapria himalayana HOM05D004890 ORTHO05D005869 5.5e-143 513.8 961 34.8
FAN20G2618 Fragaria x ananassa HOM05D004890 ORTHO05D005869 1.3e-139 502.7 701 41.9
RcHm_v2.0_Chr6g0245521 Rosa chinensis HOM05D004890 ORTHO05D005869 2.7e-134 485.0 803 39.5
HPP92_020637 Vanilla planifolia HOM05D004890 ORTHO05D005869 2.2e-123 448.7 1284 29.7
RcHm_v2.0_Chr6g0245301 Rosa chinensis HOM05D004890 ORTHO05D005869 1.9e-119 435.6 519 46.6
MD10G1117200 Malus domestica HOM05D004890 ORTHO05D005869 3.7e-115 421.4 615 41.8
Os03g0203100 Oryza sativa ssp. japonica HOM05D004890 ORTHO05D005869 6.8e-101 374.0 1037 29.8
Pp3c13_15040 Physcomitrium patens HOM05D004890 ORTHO05D005869 1.4e-93 349.7 2073 23.1
AagrBONN_evm.TU.Sc2ySwM_362.822 Anthoceros agrestis HOM05D004890 ORTHO05D005869 1.9e-79 302.8 2139 22.4
Mapoly0049s0043 Marchantia polymorpha HOM05D004890 ORTHO05D005869 2.3e-77 295.8 2193 22.5
PSO675G2309 Papaver somniferum HOM05D004890 ORTHO05D005869 3.8e-67 261.9 720 31.4
Psat7g017880 Pisum sativum HOM05D001673 ORTHO05D029933 6.0e-57 228.0 201 60.7
RcHm_v2.0_Chr6g0245531 Rosa chinensis HOM05D004890 ORTHO05D005869 6.9e-53 214.5 410 38.8
MD10G1117700 Malus domestica HOM05D004890 ORTHO05D005869 8.7e-48 197.6 166 60.2
DCAR_002202 Daucus carota HOM05D004890 ORTHO05D005869 1.9e-47 196.4 345 35.1
RcHm_v2.0_Chr6g0244911 Rosa chinensis HOM05D004890 ORTHO05D005869 4.5e-44 185.3 358 38.0
Oeu033530.1 Olea europaea HOM05D004890 ORTHO05D005869 5.5e-42 178.3 398 33.4
SHI05679 Sapria himalayana HOM05D004890 ORTHO05D005869 4.6e-41 175.3 537 29.2
RcHm_v2.0_Chr6g0245351 Rosa chinensis HOM05D004890 ORTHO05D005869 3.9e-40 172.2 215 43.7
HPP92_020638 Vanilla planifolia HOM05D004890 ORTHO05D005869 2.5e-39 169.5 558 27.4
Dinv04971 Davidia involucrata HOM05D004890 ORTHO05D005869 3.5e-33 149.1 156 49.4
Ah.01g022440 Amaranthus hybridus HOM05D004890 ORTHO05D005869 6.7e-32 144.8 250 34.0
Glyma.14G115300 Glycine max HOM05D004890 ORTHO05D005869 9.6e-31 141.0 91 75.8
SEGI_38665 Sequoiadendron giganteum HOM05D004890 ORTHO05D005869 1.3e-30 140.6 576 28.0
A07p11080 Brassica napus HOM05D004890 ORTHO05D005869 3.4e-28 132.5 111 60.4
MD10G1117300 Malus domestica HOM05D004890 ORTHO05D005869 7.6e-28 131.3 242 40.1
RcHm_v2.0_Chr6g0245441 Rosa chinensis HOM05D004890 ORTHO05D005869 2.2e-27 129.8 336 32.4
Psat2g036680 Pisum sativum HOM05D004890 ORTHO05D005869 1.6e-25 123.6 93 67.7
BolC5t32490H Brassica oleracea HOM05D004890 ORTHO05D005869 4.6e-25 122.1 99 59.6
A10p06990 Brassica napus HOM05D004890 ORTHO05D005869 3.9e-24 119.0 110 54.5
BolC7t43608H Brassica oleracea HOM05D004890 ORTHO05D005869 3.9e-24 119.0 90 62.2
MD10G1117500 Malus domestica HOM05D004890 ORTHO05D005869 6.7e-24 118.2 333 31.2
Psat7g159840 Pisum sativum HOM05D003435 ORTHO05D005869 8.7e-24 117.9 116 53.4
A01p19080 Brassica napus HOM05D004890 ORTHO05D005869 1.9e-23 116.7 90 62.2
BraA01t01851Z Brassica rapa HOM05D004890 ORTHO05D005869 1.9e-23 116.7 90 62.2
C05p37500 Brassica napus HOM05D004890 ORTHO05D005869 2.5e-23 116.3 81 63.0
SEGI_39969 Sequoiadendron giganteum HOM05D004890 ORTHO05D005869 4.3e-23 115.5 139 43.9
COL.COLO4_17250 Corchorus olitorius HOM05D004890 ORTHO05D005869 5.7e-23 115.2 134 51.5
RcHm_v2.0_Chr6g0245541 Rosa chinensis HOM05D004890 ORTHO05D005869 6.3e-22 111.7 125 49.6
CBR_g39037 Chara braunii HOM05D004890 ORTHO05D005869 1.8e-21 110.2 334 25.1
RcHm_v2.0_Chr6g0244971 Rosa chinensis HOM05D004890 ORTHO05D005869 9.1e-21 107.8 313 30.7
MD10G1117600 Malus domestica HOM05D004890 ORTHO05D005869 1.5e-20 107.1 107 47.7
RcHm_v2.0_Chr6g0245361 Rosa chinensis HOM05D004890 ORTHO05D005869 5.5e-18 98.6 116 45.7
BolC1t00884H Brassica oleracea HOM05D004890 ORTHO05D005869 1.8e-16 93.6 128 49.2
RcHm_v2.0_Chr6g0244921 Rosa chinensis HOM05D004890 ORTHO05D005869 4.4e-15 89.0 106 46.2
C01p08930 Brassica napus HOM05D004890 ORTHO05D005869 9.7e-15 87.8 142 44.4
BcaC05g27755 Brassica carinata HOM05D004890 ORTHO05D005869 5.3e-13 82.0 51 70.6
C01p08960 Brassica napus HOM05D004890 ORTHO05D005869 1.4e-10 73.9 42 78.6
RcHm_v2.0_Chr6g0244891 Rosa chinensis HOM05D004890 ORTHO05D005869 2.5e-10 73.2 88 43.2
RcHm_v2.0_Chr6g0244961 Rosa chinensis HOM05D004890 ORTHO05D005869 3.2e-10 72.8 170 28.8
SMO164G0051 Selaginella moellendorffii HOM05D004890 ORTHO05D005869 5.5e-10 72.0 298 23.8
RcHm_v2.0_Chr6g0244901 Rosa chinensis HOM05D004890 ORTHO05D005869 1.1e-07 64.3 75 42.7


User provided reference genes

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