Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G175100 Phaseolus vulgaris HOM05D007857 ORTHO05D009355 1.1e-164 583.2 290 100.0
Glyma.05G146200 Glycine max HOM05D007857 ORTHO05D009355 8.5e-104 380.9 314 68.5
Glyma.03G186400 Glycine max HOM05D007857 ORTHO05D009355 1.4e-85 320.5 237 72.6
VMungo0251G2942 Vigna mungo HOM05D007857 ORTHO05D009355 5.2e-85 318.5 266 69.5
Glyma.19G186500 Glycine max HOM05D007857 ORTHO05D009355 1.5e-84 317.0 226 73.9
Lj4g0021592 Lotus japonicus HOM05D007857 ORTHO05D009355 1.2e-78 297.4 321 56.7
Medtr8g080270 Medicago truncatula HOM05D007857 ORTHO05D009355 1.2e-60 237.7 327 47.4
Lalb_Chr07g0187361 Lupinus albus HOM05D007857 ORTHO05D009355 1.8e-58 230.3 309 50.2
Ca_18058_v3 Cicer arietinum L. HOM05D007857 ORTHO05D009355 6.6e-56 221.9 292 48.6
Psat7g078480 Pisum sativum HOM05D007857 ORTHO05D009355 1.0e-53 214.5 297 47.8
arahy.Tifrunner.gnm1.ann1.AFM6H1 Arachis hypogaea HOM05D007857 ORTHO05D009355 3.4e-52 209.5 287 48.8
arahy.Tifrunner.gnm1.ann1.32T9N9 Arachis hypogaea HOM05D007857 ORTHO05D009355 1.7e-51 207.2 287 47.7
arahy.Tifrunner.gnm1.ann1.ZB6N55 Arachis hypogaea HOM05D007857 ORTHO05D009355 1.7e-51 207.2 287 47.7
TPR.G17074 Trifolium pratense HOM05D007857 ORTHO05D009355 9.2e-50 201.4 309 45.0
Dinv10979 Davidia involucrata HOM05D007857 ORTHO05D009355 7.8e-49 198.4 293 40.6
QL03p054319 Quercus lobata HOM05D007857 ORTHO05D009355 3.4e-44 183.0 286 43.7
TWI75G0924 Tripterygium wilfordii HOM05D007857 ORTHO05D009355 4.9e-43 179.1 280 40.4
Actinidia20693 Actinidia chinensis HOM05D007857 ORTHO05D009355 5.4e-42 175.6 334 36.5
Dinv14814 Davidia involucrata HOM05D007857 ORTHO05D009355 1.2e-41 174.5 275 40.7
CSS0005757 Camellia sinensis var. sinensis HOM05D007857 ORTHO05D009355 8.6e-40 168.3 285 37.2
COL.COLO4_20347 Corchorus olitorius HOM05D007857 ORTHO05D009355 1.5e-39 167.5 276 39.1
Hma1.2p1_1239F.1_g269420 Hydrangea macrophylla HOM05D007857 ORTHO05D009355 7.3e-39 165.2 230 43.5
Thecc.02G276200 Theobroma cacao HOM05D007857 ORTHO05D009355 1.6e-38 164.1 287 39.7
Rhsim12G0103100 Rhododendron simsii HOM05D007857 ORTHO05D009355 1.1e-37 161.4 309 38.5
CANSAT01G1499 Cannabis sativa HOM05D007857 ORTHO05D009355 1.9e-34 150.6 274 35.4
Solyc04g045390.1 Solanum lycopersicum HOM05D007857 ORTHO05D009355 2.4e-34 150.2 149 49.0
TAR374G0584 Trochodendron aralioides HOM05D007857 ORTHO05D009355 9.2e-34 148.3 301 35.9
Ciclev10033758m.g Citrus clementina HOM05D007857 ORTHO05D009355 2.1e-33 147.1 298 34.6
Sed0017756 Sechium edule HOM05D007857 ORTHO05D009355 1.3e-32 144.4 292 31.5
Oeu020304.1 Olea europaea HOM05D001334 ORTHO05D001119 5.1e-32 142.5 270 34.8
Sc04g0010010 Simmondsia chinensis HOM05D007857 ORTHO05D009355 6.6e-32 142.1 295 31.9
CiPaw.06G100500 Carya illinoinensis HOM05D007857 ORTHO05D009355 1.5e-31 141.0 223 38.1
Atru.chr11.2290 Acer truncatum HOM05D007857 ORTHO05D009355 2.5e-31 140.2 294 37.8
Potri.010G057800 Populus trichocarpa HOM05D007857 ORTHO05D009355 3.3e-31 139.8 218 40.8
Potri.008G177300 Populus trichocarpa HOM05D007857 ORTHO05D009355 4.3e-31 139.4 158 47.5
Sabra10G0047600 Salix brachista HOM05D007857 ORTHO05D009355 5.6e-31 139.0 231 38.5
MD13G1115600 Malus domestica HOM05D007857 ORTHO05D009355 9.5e-31 138.3 277 36.5
CsaV3_2G025390 Cucumis sativus L. HOM05D007857 ORTHO05D009355 3.6e-30 136.3 229 36.7
MELO3C010736.2 Cucumis melo HOM05D007857 ORTHO05D009355 6.2e-30 135.6 239 34.7
ClCG08G017230 Citrullus lanatus HOM05D007857 ORTHO05D009355 1.4e-29 134.4 270 33.0
Haze_12382 Corylus avellana HOM05D007857 ORTHO05D009355 1.4e-29 134.4 264 36.0
Sed0006532 Sechium edule HOM05D007857 ORTHO05D009355 4.0e-29 132.9 251 37.5
Aqoxy5G03443 Aquilegia oxysepala HOM05D007857 ORTHO05D009355 8.9e-29 131.7 295 34.2
MD16G1115600 Malus domestica HOM05D007857 ORTHO05D009355 8.9e-29 131.7 163 45.4
Cfa009341 Carpinus fangiana HOM05D007857 ORTHO05D009355 2.0e-28 130.6 150 46.0
TWI36G0032 Tripterygium wilfordii HOM05D007857 ORTHO05D009355 2.0e-28 130.6 239 37.7
TWI36G1497 Tripterygium wilfordii HOM05D007857 ORTHO05D009355 2.0e-28 130.6 239 37.7
Manes.13G017400 Manihot esculenta HOM05D007857 ORTHO05D009355 2.2e-27 127.1 295 32.2
RcHm_v2.0_Chr4g0430861 Rosa chinensis HOM05D007857 ORTHO05D009355 2.2e-27 127.1 300 32.3
FvH4_4g24090 Fragaria vesca HOM05D007857 ORTHO05D009355 2.9e-27 126.7 315 33.0
DCAR_031188 Daucus carota HOM05D007857 ORTHO05D009355 4.1e-26 122.9 276 32.6
FAN12G2990 Fragaria x ananassa HOM05D007857 ORTHO05D009355 7.1e-26 122.1 315 32.7
FAN07G0728 Fragaria x ananassa HOM05D007857 ORTHO05D009355 1.6e-25 120.9 158 42.4
Nn4g22377 Nelumbo nucifera HOM05D007857 ORTHO05D009355 1.3e-24 117.9 260 31.9
Prupe.1G231500 Prunus persica HOM05D007857 ORTHO05D009355 1.7e-24 117.5 285 32.6
Gohir.A03G127600 Gossypium hirsutum HOM05D007857 ORTHO05D009355 5.1e-24 115.9 159 40.3
Migut.K00709 Erythranthe guttata HOM05D007857 ORTHO05D009355 6.6e-24 115.5 149 43.0
Gohir.D02G151200 Gossypium hirsutum HOM05D007857 ORTHO05D009355 6.6e-24 115.5 159 40.9
Gorai.005G169600 Gossypium raimondii HOM05D007857 ORTHO05D009355 8.6e-24 115.2 159 40.9
Eucgr.H04657 Eucalyptus grandis HOM05D007857 ORTHO05D009355 2.5e-23 113.6 261 33.7
PGSC0003DMG400017971 Solanum tuberosum HOM05D007857 ORTHO05D009355 7.3e-23 112.1 98 55.1
PGR119G0189 Punica granatum HOM05D007857 ORTHO05D009355 2.1e-22 110.5 291 33.3
TAR622G0135 Trochodendron aralioides HOM05D007857 ORTHO05D009355 4.7e-22 109.4 142 45.1
PSO782G1056 Papaver somniferum HOM05D007857 ORTHO05D009355 8.1e-22 108.6 248 32.3
PSO063G0898 Papaver somniferum HOM05D007857 ORTHO05D009355 2.4e-21 107.1 260 30.0
SalBow2G3021 Salvia bowleyana HOM05D007857 ORTHO05D009355 4.0e-21 106.3 159 40.9
AT1G67540 Arabidopsis thaliana HOM05D010720 ORTHO05D009355 1.2e-20 104.8 266 29.7
AL2G26210 Arabidopsis lyrata HOM05D010720 ORTHO05D009355 2.2e-19 100.5 265 29.8
MBI11_g31349_MAGBIO Magnolia biondii HOM05D007857 ORTHO05D009355 8.4e-19 98.6 146 39.7
Sabra08G0135300 Salix brachista HOM05D007857 ORTHO05D009355 8.4e-19 98.6 163 36.2
CARHR060110 Cardamine hirsuta HOM05D010720 ORTHO05D009355 1.2e-17 94.7 277 27.1
Sopen04g010360 Solanum pennellii HOM05D007857 ORTHO05D009355 2.7e-17 93.6 169 37.9
Thhalv10019017m.g Eutrema salsugineum HOM05D010720 ORTHO05D009355 3.9e-16 89.7 264 28.4
C06p42700 Brassica napus HOM05D010720 ORTHO05D009355 5.1e-16 89.4 158 33.5
BolC6t39169H Brassica oleracea HOM05D010720 ORTHO05D009355 5.1e-16 89.4 158 33.5
Nitab4.5_0004967g0040 Nicotiana tabacum HOM05D007857 ORTHO05D009355 5.1e-16 89.4 160 34.4
BraA07t31035Z Brassica rapa HOM05D010720 ORTHO05D009355 8.7e-16 88.6 158 33.5
SGA_v2.0_scaffold9G04766 Striga asiatica HOM05D007857 ORTHO05D009355 8.7e-16 88.6 222 32.9
A07p34090 Brassica napus HOM05D010720 ORTHO05D009355 1.1e-15 88.2 158 33.5
Cc11_g16750 Coffea canephora HOM05D007857 ORTHO05D009355 1.1e-15 88.2 260 28.5
BcaNung05070 Brassica carinata HOM05D010720 ORTHO05D009355 2.5e-15 87.0 181 29.8
BcaB03g15187 Brassica carinata HOM05D010720 ORTHO05D009355 4.3e-15 86.3 158 32.9
Aa31sc48G30 Aethionema arabicum HOM05D010720 ORTHO05D009355 2.1e-14 84.0 208 29.3
Cpa.g.sc43.26 Carica papaya HOM05D007857 ORTHO05D009355 2.1e-14 84.0 261 28.7
BolC2t08453H Brassica oleracea HOM05D010720 ORTHO05D009355 3.6e-14 83.2 274 27.7
A02p14300 Brassica napus HOM05D010720 ORTHO05D009355 6.2e-14 82.4 281 27.4
BraA02t06491Z Brassica rapa HOM05D010720 ORTHO05D009355 6.2e-14 82.4 281 27.4
BcaC03g14845 Brassica carinata HOM05D010720 ORTHO05D009355 1.1e-13 81.6 274 27.4
SHI17949 Sapria himalayana HOM05D007857 ORTHO05D009355 4.0e-13 79.7 201 27.4
Carub.0002s1388 Capsella rubella HOM05D010720 ORTHO05D009355 5.3e-13 79.3 250 27.2
Sp5g22550 Schrenkiella parvula HOM05D010720 ORTHO05D009355 6.9e-13 79.0 207 30.0
PSO357G0688 Papaver somniferum HOM05D007857 ORTHO05D009355 4.5e-12 76.3 155 31.0
Nitab4.5_0000146g0080 Nicotiana tabacum HOM05D007857 ORTHO05D009355 3.8e-11 73.2 83 42.2
THA.LOC104807888 Tarenaya hassleriana HOM05D010720 ORTHO05D009355 4.9e-11 72.8 160 27.5
Aqoxy3G01489 Aquilegia oxysepala HOM05D007857 ORTHO05D009355 1.9e-10 70.9 117 33.3
Lsat_1_v5_gn_8_149921 Lactuca sativa HOM05D007857 ORTHO05D009355 1.5e-07 61.2 208 28.8
ECA233G3449 Erigeron canadensis HOM05D007857 ORTHO05D009355 9.6e-07 58.5 73 42.5


User provided reference genes

Program Settings