Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G166800 Phaseolus vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1419.4 697 100.0
VMungo1215G3295 Vigna mungo HOM05D005163 ORTHO05D006462 0.0e+00 1383.6 697 96.4
Glyma.01G170600 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1362.1 698 95.1
Glyma.11G072700 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1347.0 697 94.0
Psat2g156920 Pisum sativum HOM05D005163 ORTHO05D006462 0.0e+00 1322.8 697 92.1
Ca_24882_v3 Cicer arietinum L. HOM05D005163 ORTHO05D006462 0.0e+00 1317.8 697 91.2
arahy.Tifrunner.gnm1.ann1.U2HICA Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1317.4 697 90.5
arahy.Tifrunner.gnm1.ann1.U51VHD Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1316.6 697 90.5
TPR.G2381 Trifolium pratense HOM05D005163 ORTHO05D006462 0.0e+00 1311.6 697 91.0
Lj2g0010053 Lotus japonicus HOM05D005163 ORTHO05D006462 0.0e+00 1304.3 693 90.8
Medtr5g021150 Medicago truncatula HOM05D005163 ORTHO05D006462 0.0e+00 1303.1 698 90.1
Lalb_Chr16g0377681 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1297.3 697 90.1
Lalb_Chr05g0212611 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1287.7 697 89.5
Gohir.A12G062100 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1229.2 698 84.2
Gorai.008G065200 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1223.4 698 83.8
Thecc.01G025400 Theobroma cacao HOM05D005163 ORTHO05D006462 0.0e+00 1217.6 698 82.7
Cfa006924 Carpinus fangiana HOM05D005163 ORTHO05D006462 0.0e+00 1217.2 697 83.6
Manes.02G100000 Manihot esculenta HOM05D005163 ORTHO05D006462 0.0e+00 1216.4 698 82.7
GSVIVG01018847001 Vitis vinifera HOM05D005163 ORTHO05D006462 0.0e+00 1212.2 698 83.8
QL06p034609 Quercus lobata HOM05D005163 ORTHO05D006462 0.0e+00 1196.4 696 81.5
RcHm_v2.0_Chr2g0100261 Rosa chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1191.4 692 81.9
Ciclev10025040m.g Citrus clementina HOM05D005163 ORTHO05D006462 0.0e+00 1189.5 694 81.7
Eucgr.J02388 Eucalyptus grandis HOM05D005163 ORTHO05D006462 0.0e+00 1188.7 694 80.8
Sed0007947 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1186.4 694 82.4
Hma1.2p1_0913F.1_g236050 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 0.0e+00 1184.9 698 81.2
Sed0022975 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1183.7 694 81.8
Atru.chr3.745 Acer truncatum HOM05D005163 ORTHO05D006462 0.0e+00 1182.5 694 81.1
MELO3C007876.2 Cucumis melo HOM05D005163 ORTHO05D006462 0.0e+00 1182.5 694 82.4
Haze_03825 Corylus avellana HOM05D005163 ORTHO05D006462 0.0e+00 1180.6 675 83.4
Lj4C212G4 Lonicera japonica HOM05D005163 ORTHO05D006462 0.0e+00 1180.6 695 81.3
FvH4_1g12400 Fragaria vesca HOM05D005163 ORTHO05D006462 0.0e+00 1179.1 692 80.8
CsaV3_6G046790 Cucumis sativus L. HOM05D005163 ORTHO05D006462 0.0e+00 1177.9 694 82.0
ClCG01G020030 Citrullus lanatus HOM05D005163 ORTHO05D006462 0.0e+00 1177.5 698 81.7
TWI73G0422 Tripterygium wilfordii HOM05D005163 ORTHO05D006462 0.0e+00 1173.7 691 80.6
MD02G1137100 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1171.0 694 80.3
Cc07_g10240 Coffea canephora HOM05D005163 ORTHO05D006462 0.0e+00 1170.6 694 80.7
Potri.005G118300 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1167.1 700 79.9
TAR376G0780 Trochodendron aralioides HOM05D005163 ORTHO05D006462 0.0e+00 1167.1 694 79.1
PGR102G2820 Punica granatum HOM05D005163 ORTHO05D006462 0.0e+00 1166.8 694 79.4
Potri.007G017600 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1166.0 695 79.7
HanXRQChr14g0441521 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1165.6 694 79.7
Peaxi162Scf00084g01221 Petunia axillaris HOM05D005163 ORTHO05D006462 0.0e+00 1165.6 694 79.8
MD15G1250800 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1159.8 693 79.5
Rhsim08G0123900 Rhododendron simsii HOM05D005163 ORTHO05D006462 0.0e+00 1158.3 719 78.2
Aqoxy5G01510 Aquilegia oxysepala HOM05D005163 ORTHO05D006462 0.0e+00 1157.1 694 78.0
Nitab4.5_0000723g0040 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1156.7 691 78.9
Sabra07G0015000 Salix brachista HOM05D005163 ORTHO05D006462 0.0e+00 1154.4 694 78.7
Prupe.7G163500 Prunus persica HOM05D005163 ORTHO05D006462 0.0e+00 1154.0 693 80.2
HanXRQChr07g0191281 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1152.1 696 79.2
CANSAT01G3091 Cannabis sativa HOM05D005163 ORTHO05D006462 0.0e+00 1151.7 697 79.2
Nitab4.5_0007070g0020 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1151.7 694 78.8
Sc03g0003300 Simmondsia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1149.8 693 79.8
PSO541G1023 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1149.0 695 78.4
Gorai.007G198300 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1147.9 694 78.4
Migut.H02494 Erythranthe guttata HOM05D005163 ORTHO05D006462 0.0e+00 1147.1 694 78.4
PGSC0003DMG400003539 Solanum tuberosum HOM05D005163 ORTHO05D006462 0.0e+00 1145.6 694 79.0
THA.LOC104826639 Tarenaya hassleriana HOM05D005163 ORTHO05D006462 0.0e+00 1145.6 695 79.6
Gohir.A11G178900 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1144.8 694 78.1
CARHR160630 Cardamine hirsuta HOM05D005163 ORTHO05D006462 0.0e+00 1144.4 694 77.7
Aa31LG4G19160 Aethionema arabicum HOM05D005163 ORTHO05D006462 0.0e+00 1144.0 695 78.6
Actinidia19230 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1142.5 694 79.7
MSTRG.23270 Avicennia marina HOM05D005163 ORTHO05D006462 0.0e+00 1141.3 695 78.6
SalBow8G4654 Salvia bowleyana HOM05D005163 ORTHO05D006462 0.0e+00 1140.9 694 78.1
Sopen02g029360 Solanum pennellii HOM05D005163 ORTHO05D006462 0.0e+00 1140.2 694 78.8
Ah.02g124830 Amaranthus hybridus HOM05D005163 ORTHO05D006462 0.0e+00 1139.8 693 78.6
Thhalv10010167m.g Eutrema salsugineum HOM05D005163 ORTHO05D006462 0.0e+00 1139.4 694 77.8
Solyc02g084690.3 Solanum lycopersicum HOM05D005163 ORTHO05D006462 0.0e+00 1138.6 694 78.7
CAN.G358.18 Capsicum annuum HOM05D005163 ORTHO05D006462 0.0e+00 1137.5 694 78.1
Oeu024029.1 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1134.8 694 78.2
Sp5g11160 Schrenkiella parvula HOM05D005163 ORTHO05D006462 0.0e+00 1132.5 695 77.0
Carub.0005s1745 Capsella rubella HOM05D005163 ORTHO05D006462 0.0e+00 1129.4 694 76.7
PSO675G4614 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1129.0 695 77.6
AT3G51050 Arabidopsis thaliana HOM05D005163 ORTHO05D006462 0.0e+00 1128.6 696 77.2
Lsat_1_v5_gn_2_78240 Lactuca sativa HOM05D005163 ORTHO05D006462 0.0e+00 1128.6 696 77.3
AL5G31470 Arabidopsis lyrata HOM05D005163 ORTHO05D006462 0.0e+00 1125.5 696 76.9
C07p46120 Brassica napus HOM05D005163 ORTHO05D006462 0.0e+00 1125.5 694 76.5
FAN28G1722 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1124.8 692 77.9
Hund16465 Selenicereus undatus HOM05D005163 ORTHO05D006462 0.0e+00 1120.9 697 77.0
Duzib147G0248 Durio zibethinus HOM05D005163 ORTHO05D006462 0.0e+00 1115.5 696 77.6
BolC7t45128H Brassica oleracea HOM05D005163 ORTHO05D006462 0.0e+00 1111.3 693 75.9
Nn5g29168 Nelumbo nucifera HOM05D005163 ORTHO05D006462 0.0e+00 1105.5 694 76.5
AUR62007635 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1099.0 718 74.9
FAN19G3097 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1096.6 680 77.1
Oeu005146.2 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1096.6 747 71.6
FAN23G1678 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1095.9 680 77.1
EL10As8g23870 Beta vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1094.0 692 76.2
A03p48100 Brassica napus HOM05D005163 ORTHO05D006462 0.0e+00 1094.0 722 73.0
Actinidia26108 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1093.6 694 76.9
SGA_v2.0_scaffold280G46851 Striga asiatica HOM05D005163 ORTHO05D006462 0.0e+00 1088.6 718 73.7
ATR0661G156 Amborella trichopoda HOM05D005163 ORTHO05D006462 0.0e+00 1085.1 694 74.4
AUR62004121 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1079.7 740 73.1
ECA238G0541 Erigeron canadensis HOM05D005163 ORTHO05D006462 0.0e+00 1078.2 647 78.7
Duzib187G1632 Durio zibethinus HOM05D005163 ORTHO05D006462 0.0e+00 1075.8 699 75.4
CSS0019296 Camellia sinensis var. sinensis HOM05D005163 ORTHO05D006462 5.7e-311 1070.5 611 82.5
HPP92_021000 Vanilla planifolia HOM05D005163 ORTHO05D006462 1.4e-309 1065.8 699 74.0
DCAR_031672 Daucus carota HOM05D005163 ORTHO05D006462 8.3e-307 1056.6 694 75.4
Cpa.g.sc6.195 Carica papaya HOM05D005163 ORTHO05D006462 1.6e-302 1042.3 698 73.9
CDE04G3147 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 1.1e-301 1039.6 674 73.1
Gohir.D12G062000 Gossypium hirsutum HOM05D005163 ORTHO05D006462 1.4e-298 1029.2 585 83.4
Os02g0100700 Oryza sativa ssp. japonica HOM05D005163 ORTHO05D006462 1.2e-292 1009.6 701 70.6
Zm00001eb228990 Zea mays HOM05D005163 ORTHO05D006462 1.3e-291 1006.1 702 70.4
BcaC06g33060 Brassica carinata HOM05D005163 ORTHO05D006462 4.1e-290 1001.1 695 70.4
COL.COLO4_21984 Corchorus olitorius HOM05D005163 ORTHO05D006462 6.6e-280 967.2 641 74.1
CiPaw.07G054500 Carya illinoinensis HOM05D005163 ORTHO05D006462 1.9e-263 912.5 539 80.7
Gohir.D11G186500 Gossypium hirsutum HOM05D005163 ORTHO05D006462 2.1e-262 909.1 581 74.5
Sabra05G0097300 Salix brachista HOM05D005163 ORTHO05D006462 1.2e-260 903.3 712 66.0
Mapoly0159s0016 Marchantia polymorpha HOM05D005163 ORTHO05D006462 3.4e-236 822.0 699 58.4
Dinv40040 Davidia involucrata HOM05D005163 ORTHO05D006462 3.8e-235 818.5 538 73.8
vmacro17732 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 3.7e-222 775.4 470 79.4
SMO340G0175 Selaginella moellendorffii HOM05D005163 ORTHO05D006462 6.3e-222 774.6 697 55.1
Pp3c2_36750 Physcomitrium patens HOM05D005163 ORTHO05D006462 2.7e-220 769.2 701 55.8
Pp3c2_36751 Physcomitrium patens HOM05D005163 ORTHO05D006462 2.7e-220 769.2 701 55.8
Pp3c2_37540 Physcomitrium patens HOM05D005163 ORTHO05D006462 7.7e-220 767.7 703 55.8
Pp3c11_13530 Physcomitrium patens HOM05D005163 ORTHO05D006462 1.8e-213 746.5 705 54.0
AagrBONN_evm.TU.Sc2ySwM_368.2341 Anthoceros agrestis HOM05D005163 ORTHO05D006462 4.5e-212 741.9 710 55.4
FAN26G0993 Fragaria x ananassa HOM05D005163 ORTHO05D006462 2.0e-188 663.3 385 81.0
CBR_g41477 Chara braunii HOM05D005163 ORTHO05D006462 5.1e-155 552.4 718 42.3
unitig_699.g19557 Utricularia gibba HOM05D005163 ORTHO05D006462 3.3e-146 523.1 375 69.1
C08p26360 Brassica napus HOM05D005163 ORTHO05D006462 3.1e-136 490.0 504 53.8
Dinv33585 Davidia involucrata HOM05D005163 ORTHO05D006462 1.4e-107 394.8 248 77.8
MCO09G435 Micromonas commoda HOM05D005163 ORTHO05D006462 4.0e-107 393.3 765 34.4
Cre07.g336050 Chlamydomonas reinhardtii HOM05D005163 ORTHO05D006462 7.2e-101 372.5 811 31.9
SEGI_18766 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 2.8e-97 360.5 268 66.0
MBI01_g27921_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D006462 3.3e-93 347.1 334 54.2
unitig_699.g19558 Utricularia gibba HOM05D005163 ORTHO05D006462 1.5e-74 285.0 179 74.9
BcaC07g39583 Brassica carinata HOM05D005163 ORTHO05D006462 7.5e-74 282.7 247 59.5
Hma1.2p1_0913F.1_g236060 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 3.2e-72 277.3 242 60.3
Dinv33586 Davidia involucrata HOM05D005163 ORTHO05D006462 6.0e-71 273.1 180 74.4
SHI08600 Sapria himalayana HOM05D005163 ORTHO05D006462 1.2e-68 265.4 165 78.2
PRCOL_00007058 Prasinoderma coloniale HOM05D005163 ORTHO05D006462 1.5e-61 241.9 608 30.8
A09p44140 Brassica napus HOM05D005163 ORTHO05D006462 1.6e-60 238.4 235 54.0
SEGI_33135 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 8.4e-49 199.5 127 73.2
BcaB05g23544 Brassica carinata HOM05D005163 ORTHO05D006462 3.5e-47 194.1 138 76.1
Dinv33584 Davidia involucrata HOM05D005163 ORTHO05D006462 7.1e-40 169.9 144 63.2
BraA09t39874Z Brassica rapa HOM05D005163 ORTHO05D006462 2.4e-35 154.8 95 75.8
CDE12G0395 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 1.3e-33 149.1 232 39.7
Sabra07G0015100 Salix brachista HOM05D005163 ORTHO05D006462 9.6e-29 132.9 75 81.3
vmacro17731 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 2.8e-28 131.3 76 80.3
Hund14017 Selenicereus undatus HOM05D005163 ORTHO05D006462 2.1e-23 115.2 84 64.3
TAR625G0301 Trochodendron aralioides HOM05D005163 ORTHO05D006462 5.0e-17 94.0 86 47.7
SHI08598 Sapria himalayana HOM05D005163 ORTHO05D006462 1.2e-15 89.4 87 52.9
BolC8t50252H Brassica oleracea HOM05D005163 ORTHO05D041294 3.7e-12 77.8 50 74.0
C08p26350 Brassica napus HOM05D005163 ORTHO05D041294 3.1e-11 74.7 50 68.0
HanXRQChr15g0473031 Helianthus annuus HOM05D005163 ORTHO05D220685 6.7e-06 57.0 32 84.4


User provided reference genes

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