Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G164200 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 2.8e-97 358.6 178 100.0
VMungo1215G3291 Vigna mungo HOM05D000749 ORTHO05D005685 4.9e-86 321.2 182 88.5
Glyma.11G017700 Glycine max HOM05D000749 ORTHO05D005685 1.7e-78 296.2 190 80.0
LjContig00312_ERROPOS870357g0005368 Lotus japonicus HOM05D000749 ORTHO05D005685 7.8e-76 287.3 189 75.1
TPR.G25592 Trifolium pratense HOM05D000749 ORTHO05D005685 2.3e-72 275.8 186 74.7
arahy.Tifrunner.gnm1.ann1.JB76D2 Arachis hypogaea HOM05D000749 ORTHO05D005685 5.2e-72 274.6 186 74.2
Glyma.08G022600 Glycine max HOM05D000749 ORTHO05D005685 3.4e-71 271.9 201 69.2
Medtr8g099455 Medicago truncatula HOM05D000749 ORTHO05D005685 5.8e-71 271.2 189 71.4
Medtr5g009310 Medicago truncatula HOM05D000749 ORTHO05D005685 7.6e-71 270.8 186 73.7
Lalb_Chr09g0320651 Lupinus albus HOM05D000749 ORTHO05D005685 9.9e-71 270.4 189 73.5
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 6.4e-70 267.7 201 69.7
arahy.Tifrunner.gnm1.ann1.1JV6NN Arachis hypogaea HOM05D000749 ORTHO05D005685 9.2e-69 263.8 189 70.9
Glyma.05G216800 Glycine max HOM05D000749 ORTHO05D005685 1.2e-68 263.5 178 73.6
QL02p030312 Quercus lobata HOM05D000749 ORTHO05D005685 2.7e-68 262.3 186 70.4
Lalb_Chr09g0332451 Lupinus albus HOM05D000749 ORTHO05D005685 7.8e-68 260.8 188 69.1
Phvul.002G298000 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 7.8e-68 260.8 201 67.7
Ca_17481_v3 Cicer arietinum L. HOM05D000749 ORTHO05D004893 1.7e-67 259.6 185 70.3
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 1.7e-67 259.6 185 70.3
arahy.Tifrunner.gnm1.ann1.YIX88E Arachis hypogaea HOM05D000749 ORTHO05D005685 5.1e-67 258.1 189 69.8
Manes.01G049300 Manihot esculenta HOM05D000749 ORTHO05D005685 1.9e-66 256.1 179 70.4
Lj4g0022263 Lotus japonicus HOM05D000749 ORTHO05D005685 4.3e-66 255.0 183 70.5
PGR042G1555 Punica granatum HOM05D000749 ORTHO05D005685 1.6e-65 253.1 185 67.0
COL.COLO4_10708 Corchorus olitorius HOM05D000749 ORTHO05D005685 1.8e-64 249.6 187 66.3
Haze_09069 Corylus avellana HOM05D000749 ORTHO05D005685 1.8e-64 249.6 190 65.8
Thecc.03G298600 Theobroma cacao HOM05D000749 ORTHO05D005685 9.0e-64 247.3 187 67.9
CSS0014286 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 3.4e-63 245.4 185 64.3
CSS0022068 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 3.4e-63 245.4 185 64.3
Ciclev10022306m.g Citrus clementina HOM05D000749 ORTHO05D005685 3.4e-63 245.4 187 64.7
SGA_v2.0_scaffold305G47984 Striga asiatica HOM05D000749 ORTHO05D005685 3.4e-63 245.4 182 64.8
Atru.chr9.1976 Acer truncatum HOM05D000749 ORTHO05D005685 7.6e-63 244.2 187 65.8
Atru.chr9.1991 Acer truncatum HOM05D000749 ORTHO05D005685 7.6e-63 244.2 187 65.8
CiPaw.11G120800 Carya illinoinensis HOM05D000749 ORTHO05D005685 7.6e-63 244.2 189 65.1
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 9.9e-63 243.8 187 65.8
RcHm_v2.0_Chr7g0194721 Rosa chinensis HOM05D000749 ORTHO05D005685 2.2e-62 242.7 186 66.1
Dinv37528 Davidia involucrata HOM05D000749 ORTHO05D005685 3.8e-62 241.9 187 65.8
FAN13G3049 Fragaria x ananassa HOM05D000749 ORTHO05D005685 3.8e-62 241.9 191 64.4
FvH4_5g04660 Fragaria vesca HOM05D000749 ORTHO05D005685 4.9e-62 241.5 192 64.6
FAN18G2450 Fragaria x ananassa HOM05D000749 ORTHO05D005685 4.9e-62 241.5 192 64.6
CANSAT21G1880 Cannabis sativa HOM05D000749 ORTHO05D005685 6.4e-62 241.1 186 66.1
MD14G1129100 Malus domestica HOM05D000749 ORTHO05D005685 6.4e-62 241.1 183 65.6
Carub.0007s1721 Capsella rubella HOM05D000749 ORTHO05D005685 8.4e-62 240.7 185 64.9
ClCG01G001690 Citrullus lanatus HOM05D000749 ORTHO05D005685 8.4e-62 240.7 185 65.4
FAN18G0718 Fragaria x ananassa HOM05D000749 ORTHO05D005685 8.4e-62 240.7 191 64.4
CiPaw.12G082400 Carya illinoinensis HOM05D000749 ORTHO05D005685 1.1e-61 240.4 183 64.5
AL7G29440 Arabidopsis lyrata HOM05D000749 ORTHO05D005685 1.4e-61 240.0 187 65.8
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 1.4e-61 240.0 185 65.4
AT4G23895 Arabidopsis thaliana HOM05D000749 ORTHO05D004893 4.2e-61 238.4 183 66.7
Duzib205G1799 Durio zibethinus HOM05D000749 ORTHO05D005685 4.2e-61 238.4 182 66.5
Oeu063515.1 Olea europaea HOM05D000749 ORTHO05D005685 4.2e-61 238.4 189 62.4
Thhalv10026064m.g Eutrema salsugineum HOM05D000749 ORTHO05D005685 5.4e-61 238.0 185 65.4
Potri.003G140500 Populus trichocarpa HOM05D000749 ORTHO05D005685 7.1e-61 237.7 189 62.4
Sp7g21860 Schrenkiella parvula HOM05D000749 ORTHO05D005685 7.1e-61 237.7 187 63.6
THA.LOC104806439 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 7.1e-61 237.7 178 68.0
CSS0029811 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.2e-60 236.9 185 61.1
CSS0041880 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.6e-60 236.5 185 61.1
CARHR231300 Cardamine hirsuta HOM05D000749 ORTHO05D005685 1.6e-60 236.5 188 64.4
MELO3C005770.2 Cucumis melo HOM05D000749 ORTHO05D005685 1.6e-60 236.5 189 64.6
Gorai.008G254700 Gossypium raimondii HOM05D000749 ORTHO05D005685 1.6e-60 236.5 185 64.3
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 1.6e-60 236.5 186 61.3
Gohir.D12G237900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 2.1e-60 236.1 185 64.3
TWI81G0603 Tripterygium wilfordii HOM05D000749 ORTHO05D005685 2.1e-60 236.1 178 64.6
TAR629G1059 Trochodendron aralioides HOM05D000749 ORTHO05D005685 2.1e-60 236.1 187 63.6
BcaNung04079 Brassica carinata HOM05D000749 ORTHO05D005685 4.6e-60 235.0 183 63.9
Gohir.A12G236700 Gossypium hirsutum HOM05D000749 ORTHO05D005685 4.6e-60 235.0 185 64.3
SalBow1G4618 Salvia bowleyana HOM05D000749 ORTHO05D005685 4.6e-60 235.0 179 64.8
Sed0010333 Sechium edule HOM05D000749 ORTHO05D005685 6.0e-60 234.6 188 64.9
Sed0020991 Sechium edule HOM05D000749 ORTHO05D005685 7.8e-60 234.2 187 63.6
Potri.001G091100 Populus trichocarpa HOM05D000749 ORTHO05D005685 1.0e-59 233.8 183 64.5
Hma1.2p1_0359F.1_g135200 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 1.7e-59 233.0 185 61.6
BcaNung04243 Brassica carinata HOM05D000749 ORTHO05D005685 2.3e-59 232.6 187 62.6
C07p53200 Brassica napus HOM05D000749 ORTHO05D005685 2.3e-59 232.6 187 62.6
BolC7t45815H Brassica oleracea HOM05D000749 ORTHO05D005685 2.3e-59 232.6 187 62.6
Cc08_g16120 Coffea canephora HOM05D000749 ORTHO05D005685 2.3e-59 232.6 187 59.9
Migut.A00638 Erythranthe guttata HOM05D000749 ORTHO05D005685 3.0e-59 232.3 179 63.1
vmacro11358 Vaccinium macrocarpon HOM05D000749 ORTHO05D005685 3.9e-59 231.9 175 62.9
Sabra01G0067500 Salix brachista HOM05D000749 ORTHO05D005685 5.1e-59 231.5 196 60.7
Gohir.D08G125900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 8.7e-59 230.7 185 64.9
Gorai.004G132800 Gossypium raimondii HOM05D000749 ORTHO05D005685 8.7e-59 230.7 187 64.2
PSO135G0827 Papaver somniferum HOM05D000749 ORTHO05D005685 8.7e-59 230.7 176 63.6
THA.LOC104813042 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 1.1e-58 230.3 175 66.9
Actinidia22163 Actinidia chinensis HOM05D000749 ORTHO05D005685 1.5e-58 229.9 178 62.9
BraA03t14551Z Brassica rapa HOM05D000749 ORTHO05D005685 1.5e-58 229.9 187 61.5
Prupe.5G120700 Prunus persica HOM05D000749 ORTHO05D004893 1.5e-58 229.9 189 61.9
MSTRG.25679 Avicennia marina HOM05D000749 ORTHO05D005685 1.9e-58 229.6 179 63.7
Aa31LG6G7160 Aethionema arabicum HOM05D000749 ORTHO05D005685 2.5e-58 229.2 178 62.9
CDE10G0735 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 2.5e-58 229.2 181 61.9
FAN08G1955 Fragaria x ananassa HOM05D000749 ORTHO05D005685 2.5e-58 229.2 193 62.2
Hma1.2p1_0440F.1_g153310 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 3.3e-58 228.8 202 56.4
MD06G1107400 Malus domestica HOM05D000749 ORTHO05D005685 3.3e-58 228.8 189 62.4
Cfa012001 Carpinus fangiana HOM05D000749 ORTHO05D004893 5.6e-58 228.0 168 67.9
A03p54840 Brassica napus HOM05D000749 ORTHO05D005685 7.3e-58 227.6 182 62.1
Psat7g025640 Pisum sativum HOM05D000749 ORTHO05D005685 9.6e-58 227.3 161 72.0
DCAR_029896 Daucus carota HOM05D000749 ORTHO05D005685 1.6e-57 226.5 188 63.8
FAN13G2768 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.6e-57 226.5 191 62.3
PSO384G3968 Papaver somniferum HOM05D000749 ORTHO05D005685 1.6e-57 226.5 175 63.4
Zm00001eb297840 Zea mays HOM05D000749 ORTHO05D005685 4.8e-57 224.9 176 60.8
Hund14218 Selenicereus undatus HOM05D000749 ORTHO05D005685 8.1e-57 224.2 178 64.0
Lj2A167G41 Lonicera japonica HOM05D000749 ORTHO05D005685 1.1e-56 223.8 164 68.3
Rhsim02G0244300 Rhododendron simsii HOM05D000749 ORTHO05D005685 1.4e-56 223.4 180 61.1
Sabra03G0101500 Salix brachista HOM05D000749 ORTHO05D005685 1.4e-56 223.4 196 59.2
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 3.1e-56 222.2 162 67.9
Nitab4.5_0006775g0110 Nicotiana tabacum HOM05D000749 ORTHO05D005685 3.1e-56 222.2 183 61.2
Eucgr.E00870 Eucalyptus grandis HOM05D000749 ORTHO05D005685 4.0e-56 221.9 221 53.4
Os05g0595500 Oryza sativa ssp. japonica HOM05D000749 ORTHO05D005685 2.6e-55 219.2 185 57.8
unitig_88.g27644 Utricularia gibba HOM05D000749 ORTHO05D005685 2.6e-55 219.2 167 62.3
HanXRQChr13g0415321 Helianthus annuus HOM05D000749 ORTHO05D005685 5.8e-55 218.0 182 59.3
Lsat_1_v5_gn_6_83941 Lactuca sativa HOM05D000749 ORTHO05D004893 5.8e-55 218.0 189 59.8
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 7.6e-55 217.6 181 59.7
Peaxi162Scf00074g00738 Petunia axillaris HOM05D000749 ORTHO05D005685 9.9e-55 217.2 190 58.9
ECA246G0427 Erigeron canadensis HOM05D000749 ORTHO05D005685 1.3e-54 216.9 179 59.2
HanXRQChr17g0534821 Helianthus annuus HOM05D000749 ORTHO05D005685 2.2e-54 216.1 180 58.9
Nn1g00225 Nelumbo nucifera HOM05D000749 ORTHO05D005685 2.9e-54 215.7 160 66.2
Solyc12g055950.2 Solanum lycopersicum HOM05D000749 ORTHO05D005685 2.9e-54 215.7 178 59.0
Sopen12g024420 Solanum pennellii HOM05D000749 ORTHO05D005685 8.4e-54 214.2 178 58.4
Sc07g0010060 Simmondsia chinensis HOM05D000749 ORTHO05D005685 1.1e-53 213.8 178 61.8
CAN.G1804.10 Capsicum annuum HOM05D000749 ORTHO05D005685 3.2e-53 212.2 183 57.4
Nitab4.5_0000726g0060 Nicotiana tabacum HOM05D000749 ORTHO05D005685 3.2e-53 212.2 176 58.5
AUR62010845 Chenopodium quinoa HOM05D000749 ORTHO05D005685 1.2e-52 210.3 182 58.8
AUR62019844 Chenopodium quinoa HOM05D000749 ORTHO05D005685 1.2e-52 210.3 182 58.8
Sc22g0004990 Simmondsia chinensis HOM05D000749 ORTHO05D005685 2.1e-52 209.5 184 58.2
BcaB03g12399 Brassica carinata HOM05D000749 ORTHO05D005685 2.7e-52 209.1 168 62.5
Aqoxy7G00094 Aquilegia oxysepala HOM05D000749 ORTHO05D005685 3.5e-52 208.8 185 59.5
Lsat_1_v5_gn_3_10900 Lactuca sativa HOM05D000749 ORTHO05D004893 4.6e-52 208.4 180 57.2
MBI06_g08470_MAGBIO Magnolia biondii HOM05D000749 ORTHO05D005685 7.9e-52 207.6 169 60.4
PGSC0003DMG400012277 Solanum tuberosum HOM05D000749 ORTHO05D005685 2.3e-51 206.1 187 56.1
Peaxi162Scf00117g01125 Petunia axillaris HOM05D000749 ORTHO05D005685 8.7e-51 204.1 182 57.1
Solyc08g082420.3 Solanum lycopersicum HOM05D000749 ORTHO05D005685 1.1e-50 203.8 183 56.3
Sopen08g030670 Solanum pennellii HOM05D000749 ORTHO05D005685 1.1e-50 203.8 183 56.3
ECA240G0537 Erigeron canadensis HOM05D000749 ORTHO05D005685 1.5e-50 203.4 156 62.8
CAN.G390.4 Capsicum annuum HOM05D000749 ORTHO05D005685 5.6e-50 201.4 172 57.0
SalBow1G0265 Salvia bowleyana HOM05D000749 ORTHO05D005685 5.6e-50 201.4 266 43.6
Hund11388 Selenicereus undatus HOM05D000749 ORTHO05D005685 3.7e-49 198.7 182 54.4
HPP92_008182 Vanilla planifolia HOM05D000749 ORTHO05D005685 4.8e-49 198.4 176 56.8
PGSC0003DMG400004994 Solanum tuberosum HOM05D000749 ORTHO05D005685 1.2e-47 193.7 162 58.6
EL10Ac5g12920 Beta vulgaris HOM05D000749 ORTHO05D004893 2.0e-47 193.0 162 59.3
Nitab4.5_0004010g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 2.0e-47 193.0 162 58.6
HanXRQChr03g0083461 Helianthus annuus HOM05D000749 ORTHO05D005685 1.7e-46 189.9 162 61.1
ECA240G3820 Erigeron canadensis HOM05D000749 ORTHO05D005685 5.5e-45 184.9 139 64.7
ATR0602G082 Amborella trichopoda HOM05D000749 ORTHO05D005685 7.1e-45 184.5 168 58.3
unitig_0.g1147 Utricularia gibba HOM05D000749 ORTHO05D005685 9.3e-45 184.1 156 55.8
TPR.G3419 Trifolium pratense HOM05D000749 ORTHO05D005685 3.0e-43 179.1 109 77.1
Nitab4.5_0001210g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 1.5e-42 176.8 137 65.7
BolC3t20284H Brassica oleracea HOM05D000749 ORTHO05D005685 3.3e-42 175.6 178 53.9
Gohir.A08G112900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 9.6e-42 174.1 139 61.9
Gohir.D12G237901 Gossypium hirsutum HOM05D000749 ORTHO05D005685 3.7e-41 172.2 128 67.2
MSTRG.13887 Avicennia marina HOM05D000749 ORTHO05D005685 6.9e-40 167.9 126 58.7
BcaC01g00478 Brassica carinata HOM05D000749 ORTHO05D005685 2.2e-38 162.9 204 47.5
C03p80360 Brassica napus HOM05D000749 ORTHO05D005685 2.2e-38 162.9 204 47.5
CDE10G1055 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 7.9e-36 154.5 125 60.8
Mapoly0105s0026 Marchantia polymorpha HOM05D000749 ORTHO05D005685 1.5e-34 150.2 186 44.1
Pp3c8_7850 Physcomitrium patens HOM05D000749 ORTHO05D005685 6.1e-28 128.3 168 43.5
BcaC09g50933 Brassica carinata HOM05D000749 ORTHO05D005685 1.1e-21 107.5 105 48.6
AagrBONN_evm.TU.Sc2ySwM_344.2051 Anthoceros agrestis HOM05D000749 ORTHO05D005685 1.0e-19 100.9 95 51.6
Pp3c24_4620 Physcomitrium patens HOM05D000749 ORTHO05D005685 1.0e-19 100.9 108 48.1
TPR.G18933 Trifolium pratense HOM05D000749 ORTHO05D005685 1.1e-18 97.4 71 66.2
CBR_g4807 Chara braunii HOM05D000749 ORTHO05D005685 7.2e-13 78.2 175 32.0
RcHm_v2.0_Chr1g0343991 Rosa chinensis HOM05D000749 ORTHO05D005685 3.9e-11 72.4 45 60.0
FAN04G2853 Fragaria x ananassa HOM05D000749 ORTHO05D004893 1.8e-08 63.5 52 63.5
Cpa.g.sc79.31 Carica papaya HOM05D000749 ORTHO05D005685 5.9e-07 58.5 49 61.2


User provided reference genes

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