Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G155600 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 0.0e+00 1756.9 960 100.0
VMungo1215G1122 Vigna mungo HOM05D003520 ORTHO05D003332 0.0e+00 1333.5 1039 73.1
arahy.Tifrunner.gnm1.ann1.AR6NCQ Arachis hypogaea HOM05D003520 ORTHO05D003332 2.2e-172 610.5 1018 42.4
arahy.Tifrunner.gnm1.ann1.49TA12 Arachis hypogaea HOM05D003520 ORTHO05D003332 3.7e-172 609.8 1012 42.8
Lalb_Chr09g0321101 Lupinus albus HOM05D003520 ORTHO05D003332 3.4e-165 586.6 1320 37.7
Glyma.08G012000 Glycine max HOM05D003520 ORTHO05D003332 1.2e-154 551.6 1189 37.2
TPR.G12816 Trifolium pratense HOM05D003520 ORTHO05D003332 3.2e-139 500.4 1245 35.6
Ca_17554_v3 Cicer arietinum L. HOM05D003520 ORTHO05D003332 6.0e-138 496.1 1060 38.7
Glyma.05G205100 Glycine max HOM05D003520 ORTHO05D003332 7.8e-138 495.7 1280 33.4
Lalb_Chr16g0389811 Lupinus albus HOM05D003520 ORTHO05D003332 6.4e-132 476.1 1173 36.7
Lj4g0003069 Lotus japonicus HOM05D003520 ORTHO05D003332 4.9e-124 449.9 1210 33.1
Medtr8g096930 Medicago truncatula HOM05D003520 ORTHO05D003332 9.0e-118 429.1 1417 30.9
Phvul.002G287000 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 9.0e-118 429.1 1329 31.8
VMungo0251G2110 Vigna mungo HOM05D003520 ORTHO05D003332 1.4e-115 421.8 1380 30.1
arahy.Tifrunner.gnm1.ann1.RT2UP8 Arachis hypogaea HOM05D003520 ORTHO05D003332 1.6e-103 381.7 1002 34.6
Psat7g035760 Pisum sativum HOM05D003520 ORTHO05D003332 2.1e-95 354.8 1218 31.0
Glyma.01G217800 Glycine max HOM05D003520 ORTHO05D003332 1.5e-67 262.3 247 64.8
QL12p017888 Quercus lobata HOM05D003520 ORTHO05D003332 6.1e-66 256.9 766 34.1
Cfa012135 Carpinus fangiana HOM05D003520 ORTHO05D003332 5.7e-64 250.4 729 31.8
CiPaw.11G138700 Carya illinoinensis HOM05D003520 ORTHO05D003332 7.2e-59 233.4 765 29.4
Duzib084G0866 Durio zibethinus HOM05D003520 ORTHO05D003332 1.2e-56 226.1 1016 26.4
Thecc.03G274800 Theobroma cacao HOM05D003520 ORTHO05D003332 4.4e-56 224.2 1012 26.1
Prupe.5G094800 Prunus persica HOM05D003520 ORTHO05D003332 7.5e-56 223.4 726 30.0
FAN13G1265 Fragaria x ananassa HOM05D003520 ORTHO05D003332 2.2e-52 211.8 826 28.9
CsaV3_5G003080 Cucumis sativus L. HOM05D003520 ORTHO05D003332 3.8e-52 211.1 789 29.2
FAN04G1936 Fragaria x ananassa HOM05D003520 ORTHO05D003332 5.2e-49 200.7 837 26.9
FAN18G3894 Fragaria x ananassa HOM05D003520 ORTHO05D003332 5.2e-49 200.7 838 27.1
FvH4_5g01860 Fragaria vesca HOM05D003520 ORTHO05D003332 1.5e-48 199.1 831 27.3
FAN08G2904 Fragaria x ananassa HOM05D003520 ORTHO05D003332 2.6e-48 198.4 849 27.6
RcHm_v2.0_Chr7g0198661 Rosa chinensis HOM05D003520 ORTHO05D003332 4.8e-47 194.1 894 27.6
MD06G1076800 Malus domestica HOM05D003520 ORTHO05D003332 5.9e-45 187.2 1110 26.1
Atru.chr9.1567 Acer truncatum HOM05D003520 ORTHO05D000037 5.0e-44 184.1 802 27.3
ClCG01G002970 Citrullus lanatus HOM05D003520 ORTHO05D003332 5.0e-44 184.1 764 27.1
Manes.02G024900 Manihot esculenta HOM05D003520 ORTHO05D003332 4.2e-43 181.0 947 25.3
Ciclev10018609m.g Citrus clementina HOM05D003520 ORTHO05D003332 3.6e-42 177.9 1060 24.7
Glyma.11G025500 Glycine max HOM05D003520 ORTHO05D003332 5.2e-41 174.1 156 78.8
Dinv37667 Davidia involucrata HOM05D003520 ORTHO05D003332 5.7e-40 170.6 747 27.4
TWI81G1024 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 4.1e-38 164.5 1000 27.1
Dinv38981 Davidia involucrata HOM05D003520 ORTHO05D003332 1.6e-37 162.5 605 27.9
MD14G1098200 Malus domestica HOM05D003520 ORTHO05D003332 2.0e-37 162.2 1072 26.8
TAR629G1002 Trochodendron aralioides HOM05D003520 ORTHO05D003332 2.0e-37 162.2 506 30.6
Gohir.D11G021400 Gossypium hirsutum HOM05D003520 ORTHO05D003332 1.0e-36 159.8 813 27.4
Gorai.007G022700 Gossypium raimondii HOM05D003520 ORTHO05D003332 1.0e-36 159.8 813 28.0
Gohir.A11G021700 Gossypium hirsutum HOM05D003520 ORTHO05D003332 1.3e-36 159.5 809 27.2
Sed0002800 Sechium edule HOM05D003520 ORTHO05D003332 8.6e-36 156.8 937 24.8
COL.COLO4_34422 Corchorus olitorius HOM05D003520 ORTHO05D003332 1.4e-33 149.4 658 26.1
Rhsim07G0092500 Rhododendron simsii HOM05D003520 ORTHO05D003332 1.2e-32 146.4 735 25.0
TWI60G1121 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 2.9e-31 141.7 755 26.9
Haze_08912 Corylus avellana HOM05D003520 ORTHO05D003332 7.8e-29 133.7 739 25.6
Haze_08915 Corylus avellana HOM05D003520 ORTHO05D003332 5.0e-28 131.0 348 33.6
Actinidia05219 Actinidia chinensis HOM05D003520 ORTHO05D003332 1.5e-27 129.4 759 27.0
MSTRG.1884 Avicennia marina HOM05D003520 ORTHO05D003332 5.6e-27 127.5 593 23.9
GSVIVG01019812001 Vitis vinifera HOM05D000016 ORTHO05D000109 1.2e-26 126.3 626 26.2
Hma1.2p1_0514F.1_g169820 Hydrangea macrophylla HOM05D003520 ORTHO05D003332 1.6e-26 125.9 172 41.3
Nn6g33544 Nelumbo nucifera HOM05D003520 ORTHO05D003332 2.8e-26 125.2 209 35.9
Aqoxy7G00385 Aquilegia oxysepala HOM05D003520 ORTHO05D003332 3.1e-25 121.7 772 24.5
Lj2C195G2 Lonicera japonica HOM05D003520 ORTHO05D003332 3.1e-25 121.7 238 36.6
TAR375G0279 Trochodendron aralioides HOM05D003520 ORTHO05D003332 2.0e-24 119.0 533 27.2
CiPaw.12G096100 Carya illinoinensis HOM05D003520 ORTHO05D003332 2.6e-24 118.6 723 23.8
Gorai.008G278300 Gossypium raimondii HOM05D003520 ORTHO05D003332 2.4e-22 112.1 694 24.1
vmacro13941 Vaccinium macrocarpon HOM05D003520 ORTHO05D003332 5.4e-22 110.9 744 24.5
Duzib084G0697 Durio zibethinus HOM05D006981 ORTHO05D008719 6.0e-21 107.5 192 36.5
Gohir.A12G258600 Gossypium hirsutum HOM05D003520 ORTHO05D003332 6.0e-21 107.5 534 26.2
ECA240G0038 Erigeron canadensis HOM05D003520 ORTHO05D003332 1.1e-19 103.2 209 31.6
Lsat_1_v5_gn_6_86801 Lactuca sativa HOM05D003520 ORTHO05D003332 1.5e-19 102.8 196 32.7
Hund11497 Selenicereus undatus HOM05D003520 ORTHO05D003332 2.5e-19 102.1 451 27.1
EL10Ac5g12763 Beta vulgaris HOM05D003520 ORTHO05D003332 2.8e-18 98.6 201 32.8
Cc08_g14270 Coffea canephora HOM05D003520 ORTHO05D003332 2.8e-18 98.6 655 23.5
HanXRQChr13g0416181 Helianthus annuus HOM05D003520 ORTHO05D003332 2.8e-18 98.6 185 34.1
Actinidia02028 Actinidia chinensis HOM05D003520 ORTHO05D003332 3.6e-18 98.2 794 23.9
Thecc.03G174900 Theobroma cacao HOM05D003520 ORTHO05D003332 3.6e-18 98.2 574 24.7
Sc22g0000330 Simmondsia chinensis HOM05D003520 ORTHO05D003332 4.7e-18 97.8 169 37.3
SGA_v2.0_scaffold144G35962 Striga asiatica HOM05D003520 ORTHO05D003332 4.7e-18 97.8 269 27.1
GSVIVG01010547001 Vitis vinifera HOM05D003520 ORTHO05D003332 8.1e-18 97.1 212 33.5
HanXRQChr03g0084491 Helianthus annuus HOM05D003520 ORTHO05D003332 1.1e-17 96.7 220 29.1
COL.COLO4_14291 Corchorus olitorius HOM05D003520 ORTHO05D003332 6.8e-17 94.0 890 23.1
Duzib205G1602 Durio zibethinus HOM05D003520 ORTHO05D003332 1.5e-16 92.8 711 23.3
PSO782G5503 Papaver somniferum HOM05D003520 ORTHO05D003332 1.5e-16 92.8 203 30.5
DCAR_008413 Daucus carota HOM05D003520 ORTHO05D003332 2.0e-16 92.4 800 23.6
vmacro13942 Vaccinium macrocarpon HOM05D003520 ORTHO05D003332 2.6e-16 92.0 229 30.6
AUR62010600 Chenopodium quinoa HOM05D003520 ORTHO05D003332 7.6e-16 90.5 725 23.3
Cc02_g03140 Coffea canephora HOM05D003520 ORTHO05D003332 1.3e-15 89.7 526 23.6
PSO478G3392 Papaver somniferum HOM05D003520 ORTHO05D003332 1.7e-15 89.4 203 30.5
Manes.14G027100 Manihot esculenta HOM05D003520 ORTHO05D003332 2.2e-15 89.0 170 36.5
Actinidia14538 Actinidia chinensis HOM05D003520 ORTHO05D003332 3.7e-15 88.2 827 23.5
Lsat_1_v5_gn_6_86841 Lactuca sativa HOM05D003520 ORTHO05D003332 3.7e-15 88.2 194 32.0
CSS0024294 Camellia sinensis var. sinensis HOM05D003520 ORTHO05D003332 4.9e-15 87.8 92 51.1
Peaxi162Scf00714g00124 Petunia axillaris HOM05D003520 ORTHO05D003332 1.1e-14 86.7 215 41.4
SalBow4G1422 Salvia bowleyana HOM05D006981 ORTHO05D008719 1.1e-14 86.7 569 26.5
SalBow4G2131 Salvia bowleyana HOM05D006981 ORTHO05D008719 1.1e-14 86.7 569 26.5
Ah.12g057370 Amaranthus hybridus HOM05D003520 ORTHO05D003332 1.9e-14 85.9 724 23.5
Cfa008307 Carpinus fangiana HOM05D003520 ORTHO05D003332 2.4e-14 85.5 809 22.4
Ah.02g116500 Amaranthus hybridus HOM05D003520 ORTHO05D003332 5.4e-14 84.3 90 46.7
SGA_v2.0_scaffold385G50464 Striga asiatica HOM05D003520 ORTHO05D003332 9.2e-14 83.6 280 25.4
CDE06G0068 Ceratophyllum demersum HOM05D003520 ORTHO05D003332 1.6e-13 82.8 109 40.4
Haze_13728 Corylus avellana HOM05D003520 ORTHO05D003332 1.6e-13 82.8 638 22.6
Nitab4.5_0003604g0010 Nicotiana tabacum HOM05D003520 ORTHO05D003332 2.1e-13 82.4 229 40.2
Migut.F00353 Erythranthe guttata HOM05D003520 ORTHO05D003332 4.6e-13 81.3 172 32.6
PGSC0003DMG400014327 Solanum tuberosum HOM05D012625 ORTHO05D003332 4.6e-13 81.3 157 36.9
Lj2g0020727 Lotus japonicus HOM05D003520 ORTHO05D003332 6.0e-13 80.9 172 38.4
Sopen03g004790 Solanum pennellii HOM05D012625 ORTHO05D003332 7.8e-13 80.5 197 33.0
CAN.G859.7 Capsicum annuum HOM05D003520 ORTHO05D003332 1.0e-12 80.1 711 24.5
Duzib205G1307 Durio zibethinus HOM05D003520 ORTHO05D003332 1.3e-12 79.7 86 45.3
Lsat_1_v5_gn_6_101581 Lactuca sativa HOM05D003520 ORTHO05D003332 1.7e-12 79.3 190 30.5
Nitab4.5_0003154g0060 Nicotiana tabacum HOM05D003520 ORTHO05D003332 2.3e-12 79.0 228 40.4
CiPaw.04G065200 Carya illinoinensis HOM05D003520 ORTHO05D003332 3.9e-12 78.2 203 33.5
QL09p014562 Quercus lobata HOM05D003520 ORTHO05D003332 3.9e-12 78.2 647 23.6
ATR0680G240 Amborella trichopoda HOM05D003520 ORTHO05D003332 6.6e-12 77.4 215 27.9
Gohir.D12G259800 Gossypium hirsutum HOM05D003520 ORTHO05D003332 6.6e-12 77.4 598 24.2
Nn1g01417 Nelumbo nucifera HOM05D003520 ORTHO05D003332 6.6e-12 77.4 97 42.3
VMungo0464G1159 Vigna mungo HOM05D003520 ORTHO05D003332 1.5e-11 76.3 592 21.6
Migut.E01117 Erythranthe guttata HOM05D003520 ORTHO05D003332 5.6e-11 74.3 245 27.8
Oeu056239.2 Olea europaea HOM05D003520 ORTHO05D003332 1.2e-10 73.2 557 23.5
Potri.015G140100 Populus trichocarpa HOM05D003520 ORTHO05D003332 1.6e-10 72.8 718 23.7
MBI18_g01149_MAGBIO Magnolia biondii HOM05D003520 ORTHO05D003332 2.1e-10 72.4 83 45.8
Rhsim07G0193900 Rhododendron simsii HOM05D003520 ORTHO05D003332 2.1e-10 72.4 144 32.6
Solyc08g080690.4 Solanum lycopersicum HOM05D003520 ORTHO05D003332 2.1e-10 72.4 711 22.1
arahy.Tifrunner.gnm1.ann1.D6ZH50 Arachis hypogaea HOM05D003520 ORTHO05D003332 3.6e-10 71.6 553 24.8
MSTRG.8747 Avicennia marina HOM05D003520 ORTHO05D003332 4.7e-10 71.2 593 23.4
Potri.012G138300 Populus trichocarpa HOM05D003520 ORTHO05D003332 8.1e-10 70.5 752 23.1
MELO3C005647.2 Cucumis melo HOM05D003520 ORTHO05D003332 1.4e-09 69.7 252 24.6
Oeu049557.4 Olea europaea HOM05D003520 ORTHO05D003332 1.4e-09 69.7 972 20.7
ClCG05G007960 Citrullus lanatus HOM05D003520 ORTHO05D003332 2.4e-09 68.9 186 29.0
TWI14G1277 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 2.4e-09 68.9 743 20.6
Solyc03g025970.3 Solanum lycopersicum HOM05D012625 ORTHO05D003332 3.1e-09 68.6 522 23.2
DCAR_020242 Daucus carota HOM05D003520 ORTHO05D003332 4.0e-09 68.2 329 24.3
Psat2g183520 Pisum sativum HOM05D003520 ORTHO05D050397 4.0e-09 68.2 117 41.0
Sabra15G0150800 Salix brachista HOM05D003520 ORTHO05D003332 5.2e-09 67.8 758 23.5
ECA238G0526 Erigeron canadensis HOM05D002097 ORTHO05D003332 6.8e-09 67.4 58 51.7
CSS0014139 Camellia sinensis var. sinensis HOM05D003520 ORTHO05D003332 8.9e-09 67.0 110 37.3
ECA238G0250 Erigeron canadensis HOM05D000003 ORTHO05D000004 8.9e-09 67.0 58 51.7
ECA238G4163 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.2e-08 66.6 53 54.7
MD07G1267200 Malus domestica HOM05D003520 ORTHO05D003332 1.5e-08 66.2 883 21.6
SalBow1G4878 Salvia bowleyana HOM05D003520 ORTHO05D003332 1.5e-08 66.2 661 22.4
Sed0005114 Sechium edule HOM05D003520 ORTHO05D003332 1.5e-08 66.2 574 23.0
MD01G1199300 Malus domestica HOM05D003520 ORTHO05D003332 2.0e-08 65.9 760 22.6
CAN.G1704.2 Capsicum annuum HOM05D012625 ORTHO05D003332 2.6e-08 65.5 562 23.0
Os04g0266400 Oryza sativa ssp. japonica HOM05D003520 ORTHO05D003332 7.6e-08 63.9 227 25.1
PGSC0003DMG400003059 Solanum tuberosum HOM05D003520 ORTHO05D003332 7.6e-08 63.9 40 65.0
Sopen08g029000 Solanum pennellii HOM05D003520 ORTHO05D003332 9.9e-08 63.5 719 21.8
AUR62017242 Chenopodium quinoa HOM05D003520 ORTHO05D003332 1.3e-07 63.2 417 24.9
Rhsim03G0179300 Rhododendron simsii HOM05D003520 ORTHO05D003332 1.3e-07 63.2 88 46.6
Os04g0273900 Oryza sativa ssp. japonica HOM05D003520 ORTHO05D003332 2.9e-07 62.0 178 25.8
Ciclev10004647m.g Citrus clementina HOM05D003520 ORTHO05D003332 3.8e-07 61.6 655 24.0
COL.COLO4_18512 Corchorus olitorius HOM05D004190 ORTHO05D004692 4.9e-07 61.2 89 44.9
Cc01_g08740 Coffea canephora HOM05D004190 ORTHO05D004692 6.4e-07 60.8 89 39.3
CsaV3_3G017000 Cucumis sativus L. HOM05D003520 ORTHO05D003332 6.4e-07 60.8 313 25.6
Peaxi162Scf00915g00037 Petunia axillaris HOM05D012625 ORTHO05D003332 6.4e-07 60.8 140 31.4
Manes.01G173566 Manihot esculenta HOM05D065945 ORTHO05D004692 8.4e-07 60.5 54 46.3
Rhsim07G0193800 Rhododendron simsii HOM05D003520 ORTHO05D003332 8.4e-07 60.5 564 22.5
ECA238G2527 Erigeron canadensis HOM05D002097 ORTHO05D002248 1.1e-06 60.1 100 36.0
HanXRQChr15g0495611 Helianthus annuus HOM05D003520 ORTHO05D003332 1.1e-06 60.1 179 29.1
PGR119G1862 Punica granatum HOM05D004190 ORTHO05D004692 1.1e-06 60.1 102 40.2
PGR142G4230 Punica granatum HOM05D003520 ORTHO05D003332 1.1e-06 60.1 126 33.3
SEGI_35246 Sequoiadendron giganteum HOM05D004190 ORTHO05D004692 1.1e-06 60.1 78 42.3
arahy.Tifrunner.gnm1.ann1.TLV18B Arachis hypogaea HOM05D003520 ORTHO05D003332 1.4e-06 59.7 112 37.5
SEGI_04263 Sequoiadendron giganteum HOM05D016141 ORTHO05D004692 1.4e-06 59.7 83 43.4
BraA10t43742Z Brassica rapa HOM05D000173 ORTHO05D000316 1.9e-06 59.3 68 51.5
Eucgr.K00243 Eucalyptus grandis HOM05D003520 ORTHO05D003332 2.4e-06 58.9 637 22.0
Os08g0206700 Oryza sativa ssp. japonica HOM05D003520 ORTHO05D003332 2.4e-06 58.9 58 48.3
ClCG03G001470 Citrullus lanatus HOM05D004190 ORTHO05D004692 3.2e-06 58.5 126 35.7
Sed0024869 Sechium edule HOM05D004190 ORTHO05D004692 4.2e-06 58.2 94 40.4
CsaV3_1G034280 Cucumis sativus L. HOM05D004190 ORTHO05D004692 5.4e-06 57.8 117 35.0
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 5.4e-06 57.8 99 39.4
Ah.15g097420 Amaranthus hybridus HOM05D004190 ORTHO05D004692 7.1e-06 57.4 92 40.2
Actinidia32870 Actinidia chinensis HOM05D003520 ORTHO05D003332 9.3e-06 57.0 255 25.9
Sp6g21060 Schrenkiella parvula HOM05D004190 ORTHO05D004692 9.3e-06 57.0 84 40.5
TWI09G1536 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 9.3e-06 57.0 81 33.3


User provided reference genes

Program Settings