Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G154300 Phaseolus vulgaris HOM05D005348 ORTHO05D006635 0.0e+00 1438.3 751 100.0
Lj2g0017844 Lotus japonicus HOM05D005348 ORTHO05D006635 0.0e+00 1177.5 724 80.7
Psat2g181800 Pisum sativum HOM05D005348 ORTHO05D006635 0.0e+00 1171.0 758 76.9
TPR.G6715 Trifolium pratense HOM05D005348 ORTHO05D006635 0.0e+00 1171.0 759 78.7
Medtr5g010740 Medicago truncatula HOM05D005348 ORTHO05D006635 0.0e+00 1150.6 768 76.2
Lalb_Chr16g0377191 Lupinus albus HOM05D005348 ORTHO05D006635 0.0e+00 1099.0 745 74.4
arahy.Tifrunner.gnm1.ann1.SKE7H3 Arachis hypogaea HOM05D005348 ORTHO05D006635 1.0e-311 1072.8 734 77.7
arahy.Tifrunner.gnm1.ann1.C7APUF Arachis hypogaea HOM05D005348 ORTHO05D006635 7.7e-311 1070.1 663 79.2
QL12p017446 Quercus lobata HOM05D005348 ORTHO05D006635 5.1e-302 1040.8 669 73.8
TAR375G0646 Trochodendron aralioides HOM05D005348 ORTHO05D006635 3.0e-294 1015.0 678 71.7
FvH4_5g28890 Fragaria vesca HOM05D005348 ORTHO05D006635 5.1e-294 1014.2 676 70.4
Prupe.5G092400 Prunus persica HOM05D005348 ORTHO05D006635 2.8e-292 1008.4 670 71.9
Glyma.15G240000 Glycine max HOM05D005348 ORTHO05D006635 1.4e-291 1006.1 540 91.5
MD04G1066100 Malus domestica HOM05D005348 ORTHO05D006635 2.2e-289 998.8 654 72.3
Glyma.11G026100 Glycine max HOM05D005348 ORTHO05D006635 1.2e-287 993.0 540 90.4
Thecc.03G272300 Theobroma cacao HOM05D005348 ORTHO05D006635 4.6e-287 991.1 593 77.1
Dinv39001 Davidia involucrata HOM05D005348 ORTHO05D006635 3.0e-286 988.4 629 75.5
Duzib068G0163 Durio zibethinus HOM05D005348 ORTHO05D006635 3.9e-286 988.0 651 71.7
CANSAT21G2165 Cannabis sativa HOM05D005348 ORTHO05D006635 8.7e-286 986.9 615 75.3
Migut.E01288 Erythranthe guttata HOM05D005348 ORTHO05D006635 8.7e-286 986.9 661 71.4
GSVIVG01019819001 Vitis vinifera HOM05D005348 ORTHO05D006635 9.6e-285 983.4 737 66.8
ClCG01G003080 Citrullus lanatus HOM05D005348 ORTHO05D006635 1.6e-284 982.6 692 68.6
Sc05g0000210 Simmondsia chinensis HOM05D005348 ORTHO05D006635 1.6e-284 982.6 661 71.3
PGR031G1121 Punica granatum HOM05D005348 ORTHO05D006635 2.1e-284 982.2 670 70.3
Actinidia05223 Actinidia chinensis HOM05D005348 ORTHO05D006635 8.2e-284 980.3 673 70.7
Gorai.007G022400 Gossypium raimondii HOM05D005348 ORTHO05D006635 3.1e-283 978.4 666 69.7
CiPaw.11G140300 Carya illinoinensis HOM05D005348 ORTHO05D006635 3.4e-282 974.9 695 69.8
Manes.02G025740 Manihot esculenta HOM05D005348 ORTHO05D006635 1.9e-280 969.1 676 69.2
CSS0016729 Camellia sinensis var. sinensis HOM05D005348 ORTHO05D006635 1.6e-279 966.1 670 69.1
Sed0022971 Sechium edule HOM05D005348 ORTHO05D006635 1.3e-278 963.0 669 68.9
Aqoxy7G00422 Aquilegia oxysepala HOM05D005348 ORTHO05D006635 9.7e-277 956.8 665 69.2
THA.LOC104813014 Tarenaya hassleriana HOM05D005348 ORTHO05D006635 1.5e-274 949.5 603 72.8
AL6G46320 Arabidopsis lyrata HOM05D005348 ORTHO05D006635 5.0e-273 944.5 581 75.2
Glyma.09G081600 Glycine max HOM05D005348 ORTHO05D006635 5.0e-273 944.5 483 93.6
Sopen08g028770 Solanum pennellii HOM05D005348 ORTHO05D006635 8.5e-273 943.7 713 64.2
Eucgr.D01915 Eucalyptus grandis HOM05D005348 ORTHO05D006635 1.1e-272 943.3 665 69.0
CAN.G981.21 Capsicum annuum HOM05D005348 ORTHO05D006635 1.9e-272 942.6 711 63.4
PSO782G2170 Papaver somniferum HOM05D005348 ORTHO05D006635 4.2e-272 941.4 666 68.3
SGA_v2.0_scaffold144G35970 Striga asiatica HOM05D005348 ORTHO05D006635 4.2e-272 941.4 593 73.0
CARHR254650 Cardamine hirsuta HOM05D005348 ORTHO05D006635 1.2e-271 939.9 597 72.7
RcHm_v2.0_Chr4g0410761 Rosa chinensis HOM05D005348 ORTHO05D006635 2.1e-271 939.1 669 68.3
Carub.0006s3081 Capsella rubella HOM05D005348 ORTHO05D006635 1.8e-270 936.0 667 67.5
AT4G11720 Arabidopsis thaliana HOM05D005348 ORTHO05D006635 5.1e-270 934.5 597 73.0
Sabra01G0082300 Salix brachista HOM05D005348 ORTHO05D006635 7.4e-269 930.6 703 65.4
SHI23548 Sapria himalayana HOM05D005348 ORTHO05D006635 9.7e-269 930.2 653 68.0
PSO478G3496 Papaver somniferum HOM05D005348 ORTHO05D006635 2.2e-268 929.1 670 67.6
AL6G46446 Arabidopsis lyrata HOM05D005348 ORTHO05D006635 1.1e-267 926.8 681 65.8
TWI15G0275 Tripterygium wilfordii HOM05D005348 ORTHO05D006635 6.9e-267 924.1 590 73.7
Ciclev10019148m.g Citrus clementina HOM05D005348 ORTHO05D006635 8.5e-265 917.1 592 73.0
Sp6g05730 Schrenkiella parvula HOM05D005348 ORTHO05D006635 4.2e-264 914.8 581 72.6
EL10Ac4g10111 Beta vulgaris HOM05D005348 ORTHO05D006635 6.1e-263 911.0 597 71.7
Cc08_g14090 Coffea canephora HOM05D005348 ORTHO05D006635 7.9e-263 910.6 742 61.2
BraA09t38310Z Brassica rapa HOM05D005348 ORTHO05D006635 3.0e-262 908.7 603 70.3
FAN13G3003 Fragaria x ananassa HOM05D005348 ORTHO05D006635 2.6e-261 905.6 716 62.4
BolC9t56320H Brassica oleracea HOM05D005348 ORTHO05D006635 7.4e-261 904.0 619 68.7
Lsat_1_v5_gn_3_5380 Lactuca sativa HOM05D005348 ORTHO05D006635 4.1e-259 898.3 628 68.3
Ah.06g194640 Amaranthus hybridus HOM05D005348 ORTHO05D006635 5.5e-256 887.9 585 71.5
Nn6g34225 Nelumbo nucifera HOM05D005348 ORTHO05D006635 2.7e-255 885.6 956 50.1
A09p27390 Brassica napus HOM05D005348 ORTHO05D006635 1.0e-254 883.6 595 69.7
C09p34740 Brassica napus HOM05D005348 ORTHO05D006635 3.0e-254 882.1 595 69.6
Potri.001G109000 Populus trichocarpa HOM05D005348 ORTHO05D006635 6.7e-254 880.9 533 76.9
ECA240G2378 Erigeron canadensis HOM05D005348 ORTHO05D006635 2.0e-253 879.4 599 68.6
DCAR_006756 Daucus carota HOM05D005348 ORTHO05D006635 7.4e-253 877.5 622 68.8
BcaB01g01675 Brassica carinata HOM05D005348 ORTHO05D006635 2.8e-252 875.5 668 63.6
Aa31LG9G10660 Aethionema arabicum HOM05D005348 ORTHO05D006635 6.3e-252 874.4 602 69.3
Rhsim07G0093800 Rhododendron simsii HOM05D005348 ORTHO05D006635 1.1e-251 873.6 775 58.1
BcaB05g23815 Brassica carinata HOM05D005348 ORTHO05D006635 4.1e-251 871.7 606 67.5
Manes.01G066000 Manihot esculenta HOM05D005348 ORTHO05D006635 1.6e-250 869.8 571 72.3
MELO3C005635.2 Cucumis melo HOM05D005348 ORTHO05D006635 1.3e-249 866.7 563 73.0
SalBow1G6288 Salvia bowleyana HOM05D005348 ORTHO05D006635 2.7e-247 859.0 673 63.7
Haze_08938 Corylus avellana HOM05D005348 ORTHO05D006635 1.8e-246 856.3 686 64.6
FAN18G1071 Fragaria x ananassa HOM05D005348 ORTHO05D006635 2.3e-246 855.9 594 69.2
Thhalv10028515m.g Eutrema salsugineum HOM05D005348 ORTHO05D006635 4.4e-245 851.7 535 72.1
vmacro13927 Vaccinium macrocarpon HOM05D005348 ORTHO05D006635 4.2e-240 835.1 732 58.9
FAN18G0890 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.3e-236 823.5 680 61.2
VMungo1215G1946 Vigna mungo HOM05D005348 ORTHO05D006635 2.3e-233 812.8 421 95.2
CsaV3_5G003200 Cucumis sativus L. HOM05D005348 ORTHO05D006635 5.4e-227 791.6 533 72.0
Nitab4.5_0002234g0010 Nicotiana tabacum HOM05D005348 ORTHO05D006635 3.5e-226 788.9 710 57.6
Peaxi162Scf00714g00430 Petunia axillaris HOM05D005348 ORTHO05D006635 1.5e-224 783.5 497 74.4
RcHm_v2.0_Chr7g0199071 Rosa chinensis HOM05D005348 ORTHO05D006635 1.5e-221 773.5 678 58.1
AUR62006548 Chenopodium quinoa HOM05D005348 ORTHO05D006635 1.3e-217 760.4 510 68.4
Solyc08g080450.3 Solanum lycopersicum HOM05D005348 ORTHO05D006635 8.6e-217 757.7 561 65.2
Ca_06657_v3 Cicer arietinum L. HOM05D005348 ORTHO05D006635 6.2e-215 751.5 720 60.8
AUR62037708 Chenopodium quinoa HOM05D005348 ORTHO05D006635 1.4e-211 740.3 555 65.0
MBI04_g31975_MAGBIO Magnolia biondii HOM05D005348 ORTHO05D006635 1.3e-209 733.8 605 61.5
AUR62000200 Chenopodium quinoa HOM05D005348 ORTHO05D006635 2.8e-207 726.1 532 65.2
Atru.chr9.1551 Acer truncatum HOM05D005348 ORTHO05D006635 3.7e-204 715.7 477 71.7
COL.COLO4_05261 Corchorus olitorius HOM05D005348 ORTHO05D006635 7.3e-200 701.4 615 57.9
Os05g0269500 Oryza sativa ssp. japonica HOM05D005348 ORTHO05D006635 1.4e-198 697.2 619 56.2
FvH4_5g01650 Fragaria vesca HOM05D005348 ORTHO05D006635 7.8e-194 681.4 518 66.4
Os09g0525700 Oryza sativa ssp. japonica HOM05D005348 ORTHO05D006635 3.9e-193 679.1 585 57.9
Gohir.D11G021100 Gossypium hirsutum HOM05D005348 ORTHO05D006635 6.4e-188 661.8 457 67.4
Gohir.A11G021400 Gossypium hirsutum HOM05D005348 ORTHO05D006635 7.3e-184 648.3 425 70.8
Nitab4.5_0002853g0050 Nicotiana tabacum HOM05D005348 ORTHO05D006635 4.8e-183 645.6 691 52.0
Lj8C237T7 Lonicera japonica HOM05D005348 ORTHO05D006635 2.1e-170 603.6 393 71.5
Cpa.g.sc29.190 Carica papaya HOM05D005348 ORTHO05D006635 4.8e-159 565.8 353 76.5
unitig_26.g9696 Utricularia gibba HOM05D005348 ORTHO05D006635 1.2e-157 561.2 658 48.8
Glyma.09G081420 Glycine max HOM05D005348 ORTHO05D006635 5.5e-147 525.8 286 92.0
HPP92_004952 Vanilla planifolia HOM05D005348 ORTHO05D006635 4.2e-139 499.6 652 43.4
Zm00001eb103180 Zea mays HOM05D005348 ORTHO05D006635 3.0e-137 493.4 376 62.2
VMungo1215G1628 Vigna mungo HOM05D005348 ORTHO05D006635 2.7e-125 453.8 326 77.3
AUR62000197 Chenopodium quinoa HOM05D005348 ORTHO05D006635 2.1e-106 391.0 311 61.7
ATR0757G099 Amborella trichopoda HOM05D005348 ORTHO05D006635 3.4e-88 330.5 209 72.7
Hund02677 Selenicereus undatus HOM05D005348 ORTHO05D006635 1.2e-82 312.0 270 61.9
Prupe.8G039500 Prunus persica HOM05D005348 ORTHO05D006635 4.7e-82 310.1 297 55.2
Hund02678 Selenicereus undatus HOM05D005348 ORTHO05D006635 4.6e-77 293.5 205 65.9
FAN04G2632 Fragaria x ananassa HOM05D005348 ORTHO05D006635 2.5e-75 287.7 666 32.1
Glyma.09G081380 Glycine max HOM05D005348 ORTHO05D006635 1.1e-73 282.3 173 76.9
FAN04G3017 Fragaria x ananassa HOM05D005348 ORTHO05D006635 9.0e-65 252.7 237 52.7
Prupe.8G039400 Prunus persica HOM05D005348 ORTHO05D006635 1.7e-63 248.4 235 53.6
MBI04_g31964_MAGBIO Magnolia biondii HOM05D005348 ORTHO05D006635 1.3e-50 205.7 189 59.3
Glyma.11G176306 Glycine max HOM05D005348 ORTHO05D006635 5.9e-48 196.8 91 97.8
FAN08G1421 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.1e-46 192.6 139 69.8
MSTRG.13824 Avicennia marina HOM05D005348 ORTHO05D006635 1.6e-45 188.7 170 52.9
Glyma.01G216933 Glycine max HOM05D005348 ORTHO05D006635 2.3e-44 184.9 115 80.9
Glyma.11G026250 Glycine max HOM05D005348 ORTHO05D006635 1.3e-42 179.1 103 89.3
Peaxi162Scf00714g00422 Petunia axillaris HOM05D005348 ORTHO05D006635 1.3e-42 179.1 177 50.8
Cre16.g674852 Chlamydomonas reinhardtii HOM05D005348 ORTHO05D006635 6.9e-41 173.3 667 25.9
Gohir.D11G021150 Gossypium hirsutum HOM05D005348 ORTHO05D006635 2.6e-40 171.4 137 64.2
FAN08G1570 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.3e-39 169.1 184 54.3
Mapoly0066s0032 Marchantia polymorpha HOM05D005348 ORTHO05D006635 2.7e-37 161.4 517 24.2
HanXRQChr02g0035411 Helianthus annuus HOM05D005348 ORTHO05D006635 4.4e-35 154.1 121 57.0
CBR_g19301 Chara braunii HOM05D005348 ORTHO05D006635 9.7e-35 152.9 580 25.2
Pp3c25_15230 Physcomitrium patens HOM05D005348 ORTHO05D006635 5.9e-32 143.7 350 28.0
Lj8A237G27 Lonicera japonica HOM05D005348 ORTHO05D006635 2.1e-29 135.2 78 85.9
Mapoly0035s0066 Marchantia polymorpha HOM05D005348 ORTHO05D006635 2.0e-27 128.6 601 22.8
ATR0757G119 Amborella trichopoda HOM05D005348 ORTHO05D006635 5.7e-27 127.1 80 61.2
FAN08G2219 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.7e-26 125.6 139 48.9
FAN13G0849 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.6e-24 119.0 92 67.4
PGSC0003DMG400003049 Solanum tuberosum HOM05D005348 ORTHO05D006635 1.7e-23 115.5 134 47.8
arahy.Tifrunner.gnm1.ann1.AXGL4F Arachis hypogaea HOM05D005348 ORTHO05D006635 2.7e-21 108.2 59 84.7
AagrBONN_evm.TU.Sc2ySwM_368.2662 Anthoceros agrestis HOM05D005348 ORTHO05D006635 8.8e-20 103.2 571 21.4
CsaV3_6G021380 Cucumis sativus L. HOM05D005348 ORTHO05D006635 3.7e-18 97.8 132 42.4
FvH4_5g01630 Fragaria vesca HOM05D005348 ORTHO05D006635 1.4e-12 79.3 63 55.6


User provided reference genes

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