Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G151800 Phaseolus vulgaris HOM05D005851 ORTHO05D007137 5.1e-93 344.4 169 100.0
Glyma.01G213300 Glycine max HOM05D005851 ORTHO05D007137 7.2e-71 270.8 172 82.6
VMungo1215G2211 Vigna mungo HOM05D005851 ORTHO05D007137 3.3e-68 261.9 140 88.6
Glyma.11G028600 Glycine max HOM05D005851 ORTHO05D007137 1.7e-64 249.6 154 82.5
Lj2g0003035 Lotus japonicus HOM05D005851 ORTHO05D007137 1.1e-60 236.9 171 73.1
Medtr5g011460 Medicago truncatula HOM05D005851 ORTHO05D007137 1.1e-58 230.3 172 73.3
TPR.G19565 Trifolium pratense HOM05D005851 ORTHO05D007137 1.6e-57 226.5 173 72.8
Psat2g180400 Pisum sativum HOM05D005851 ORTHO05D007137 1.7e-56 223.0 173 70.5
arahy.Tifrunner.gnm1.ann1.BUTP6K Arachis hypogaea HOM05D005851 ORTHO05D007137 2.2e-56 222.6 179 65.4
arahy.Tifrunner.gnm1.ann1.KEJN3W Arachis hypogaea HOM05D005851 ORTHO05D007137 1.5e-55 219.9 179 64.2
Lalb_Chr16g0379871 Lupinus albus HOM05D005851 ORTHO05D007137 4.2e-55 218.4 172 65.1
Hma1.2p1_0367F.1_g137205 Hydrangea macrophylla HOM05D005851 ORTHO05D007137 4.8e-51 204.9 135 76.3
FAN13G0774 Fragaria x ananassa HOM05D005851 ORTHO05D007137 9.1e-50 200.7 134 73.1
QL12p015621 Quercus lobata HOM05D005851 ORTHO05D007137 1.2e-49 200.3 194 58.8
TWI60G0484 Tripterygium wilfordii HOM05D005851 ORTHO05D007137 1.6e-49 199.9 167 65.9
FvH4_5g00940 Fragaria vesca HOM05D005851 ORTHO05D007137 2.0e-49 199.5 134 72.4
RcHm_v2.0_Chr7g0200451 Rosa chinensis HOM05D005851 ORTHO05D007137 2.0e-49 199.5 130 74.6
CSS0019536 Camellia sinensis var. sinensis HOM05D005851 ORTHO05D007137 2.7e-49 199.1 185 58.4
MD06G1068000 Malus domestica HOM05D005851 ORTHO05D007137 3.5e-49 198.7 130 75.4
FAN04G1422 Fragaria x ananassa HOM05D005851 ORTHO05D007137 4.5e-49 198.4 134 72.4
Potri.001G114800 Populus trichocarpa HOM05D005851 ORTHO05D007137 4.5e-49 198.4 135 74.1
Sabra01G0087800 Salix brachista HOM05D005851 ORTHO05D007137 4.5e-49 198.4 128 77.3
Cpa.g.sc29.62 Carica papaya HOM05D005851 ORTHO05D007137 3.8e-48 195.3 130 76.9
TAR629G1703 Trochodendron aralioides HOM05D005851 ORTHO05D007137 3.8e-48 195.3 130 75.4
Ciclev10024430m.g Citrus clementina HOM05D005851 ORTHO05D007137 5.0e-48 194.9 126 75.4
Actinidia14484 Actinidia chinensis HOM05D005851 ORTHO05D007137 6.5e-48 194.5 154 65.6
ECA233G5981 Erigeron canadensis HOM05D005851 ORTHO05D007137 1.1e-47 193.7 122 76.2
HanXRQChr09g0246661 Helianthus annuus HOM05D005851 ORTHO05D007137 1.5e-47 193.4 105 86.7
SGA_v2.0_scaffold144G35989 Striga asiatica HOM05D005851 ORTHO05D007137 2.5e-47 192.6 154 65.6
CDE04G1030 Ceratophyllum demersum HOM05D005851 ORTHO05D007137 3.2e-47 192.2 161 64.0
Sc01g0009080 Simmondsia chinensis HOM05D005851 ORTHO05D007137 3.2e-47 192.2 134 72.4
Rhsim05G0172500 Rhododendron simsii HOM05D005851 ORTHO05D007137 4.2e-47 191.8 141 68.1
GSVIVG01019923001 Vitis vinifera HOM05D005851 ORTHO05D007137 4.2e-47 191.8 121 76.9
Peaxi162Scf00620g00019 Petunia axillaris HOM05D005851 ORTHO05D007137 9.4e-47 190.7 131 71.0
MBI12_g34479_MAGBIO Magnolia biondii HOM05D005851 ORTHO05D007137 1.6e-46 189.9 104 83.7
vmacro00216 Vaccinium macrocarpon HOM05D005851 ORTHO05D007137 2.1e-46 189.5 128 73.4
Atru.chr9.1473 Acer truncatum HOM05D005851 ORTHO05D007137 2.7e-46 189.1 178 60.1
Oeu064711.1 Olea europaea HOM05D005851 ORTHO05D007137 2.7e-46 189.1 115 78.3
PGSC0003DMG400003949 Solanum tuberosum HOM05D005851 ORTHO05D007137 1.0e-45 187.2 147 63.3
CAN.G630.46 Capsicum annuum HOM05D005851 ORTHO05D007137 1.8e-45 186.4 103 83.5
Solyc08g079680.3 Solanum lycopersicum HOM05D005851 ORTHO05D007137 2.3e-45 186.0 147 62.6
Sopen08g028040 Solanum pennellii HOM05D005851 ORTHO05D007137 2.3e-45 186.0 147 62.6
CsaV3_3G003320 Cucumis sativus L. HOM05D005851 ORTHO05D007137 3.0e-45 185.7 134 70.9
Gohir.D12G225000 Gossypium hirsutum HOM05D005851 ORTHO05D007137 3.0e-45 185.7 155 63.2
ATR0810G218 Amborella trichopoda HOM05D005851 ORTHO05D007137 4.0e-45 185.3 121 74.4
BolC1t01669H Brassica oleracea HOM05D005851 ORTHO05D007137 4.0e-45 185.3 156 62.2
AUR62010535 Chenopodium quinoa HOM05D005851 ORTHO05D007137 5.2e-45 184.9 157 63.1
Gorai.008G241100 Gossypium raimondii HOM05D005851 ORTHO05D007137 5.2e-45 184.9 155 63.2
Nitab4.5_0006122g0020 Nicotiana tabacum HOM05D005851 ORTHO05D007137 5.2e-45 184.9 114 75.4
Nitab4.5_0000439g0090 Nicotiana tabacum HOM05D005851 ORTHO05D007137 6.8e-45 184.5 114 75.4
Carub.0007s1844 Capsella rubella HOM05D005851 ORTHO05D007137 8.8e-45 184.1 155 61.3
AUR62017360 Chenopodium quinoa HOM05D005851 ORTHO05D007137 8.8e-45 184.1 157 61.8
PGR042G2385 Punica granatum HOM05D005851 ORTHO05D007137 8.8e-45 184.1 131 70.2
THA.LOC104814025 Tarenaya hassleriana HOM05D005851 ORTHO05D007137 8.8e-45 184.1 135 70.4
Aa31LG6G4910 Aethionema arabicum HOM05D000943 ORTHO05D002475 1.2e-44 183.7 136 66.9
AL7G30690 Arabidopsis lyrata HOM05D005851 ORTHO05D007137 1.2e-44 183.7 155 61.3
BcaC09g51070 Brassica carinata HOM05D005851 ORTHO05D007137 1.2e-44 183.7 156 61.5
BcaC09g51071 Brassica carinata HOM05D005851 ORTHO05D007137 1.2e-44 183.7 156 61.5
C01p17300 Brassica napus HOM05D005851 ORTHO05D007137 1.2e-44 183.7 156 61.5
CARHR229860 Cardamine hirsuta HOM05D005851 ORTHO05D007137 1.2e-44 183.7 102 84.3
Cc08_g13500 Coffea canephora HOM05D005851 ORTHO05D007137 1.2e-44 183.7 162 60.5
Duzib205G1229 Durio zibethinus HOM05D005851 ORTHO05D007137 1.5e-44 183.3 107 81.3
Gohir.A12G222500 Gossypium hirsutum HOM05D005851 ORTHO05D007137 2.0e-44 183.0 121 76.0
Nitab4.5_0001816g0070 Nicotiana tabacum HOM05D005851 ORTHO05D007137 2.0e-44 183.0 157 62.4
Os04g0379400 Oryza sativa ssp. japonica HOM05D005851 ORTHO05D007137 2.0e-44 183.0 101 82.2
HPP92_025677 Vanilla planifolia HOM05D005851 ORTHO05D007137 2.0e-44 183.0 103 83.5
Zm00001eb103020 Zea mays HOM05D005851 ORTHO05D007137 2.0e-44 183.0 101 82.2
A01p14080 Brassica napus HOM05D005851 ORTHO05D007137 4.4e-44 181.8 102 81.4
BraA01t01356Z Brassica rapa HOM05D005851 ORTHO05D007137 4.4e-44 181.8 102 81.4
MSTRG.1924 Avicennia marina HOM05D005851 ORTHO05D007137 9.8e-44 180.6 101 82.2
Thhalv10026321m.g Eutrema salsugineum HOM05D005851 ORTHO05D007137 9.8e-44 180.6 130 69.2
MELO3C013999.2 Cucumis melo HOM05D005851 ORTHO05D007137 1.3e-43 180.3 142 67.6
BcaNung01022 Brassica carinata HOM05D005851 ORTHO05D007137 1.7e-43 179.9 102 80.4
SalBow1G3546 Salvia bowleyana HOM05D005851 ORTHO05D007137 1.7e-43 179.9 101 80.2
PGSC0003DMG400012515 Solanum tuberosum HOM05D005851 ORTHO05D007137 2.2e-43 179.5 102 80.4
AT4G22830 Arabidopsis thaliana HOM05D005851 ORTHO05D007137 2.8e-43 179.1 102 80.4
Nitab4.5_0001265g0130 Nicotiana tabacum HOM05D005851 ORTHO05D007137 3.7e-43 178.7 157 61.1
EL10Ac5g12653 Beta vulgaris HOM05D005851 ORTHO05D007137 6.3e-43 177.9 101 80.2
CAN.G1394.24 Capsicum annuum HOM05D005851 ORTHO05D007137 6.3e-43 177.9 103 78.6
Solyc08g007580.4 Solanum lycopersicum HOM05D005851 ORTHO05D007137 6.3e-43 177.9 102 78.4
Sopen08g003540 Solanum pennellii HOM05D005851 ORTHO05D007137 8.3e-43 177.6 102 78.4
CiPaw.11G145200 Carya illinoinensis HOM05D005851 ORTHO05D007137 1.2e-41 173.7 137 65.0
SMO364G0744 Selaginella moellendorffii HOM05D005851 ORTHO05D007137 1.7e-40 169.9 106 70.8
FAN08G3582 Fragaria x ananassa HOM05D005851 ORTHO05D007137 1.5e-39 166.8 136 64.7
Pp3c10_11850 Physcomitrium patens HOM05D005851 ORTHO05D007137 7.2e-39 164.5 103 74.8
Pp3c12_9510 Physcomitrium patens HOM05D005851 ORTHO05D007137 9.5e-39 164.1 134 63.4
Mapoly0066s0013 Marchantia polymorpha HOM05D005851 ORTHO05D007137 2.8e-38 162.5 153 55.6
Ah.02g116130 Amaranthus hybridus HOM05D005851 ORTHO05D007137 2.0e-36 156.4 96 76.0
CANSAT95G0001 Cannabis sativa HOM05D005851 ORTHO05D007137 4.4e-36 155.2 160 53.8
Manes.02G031801 Manihot esculenta HOM05D005851 ORTHO05D007137 9.8e-36 154.1 114 66.7
DCAR_000876 Daucus carota HOM05D005851 ORTHO05D007137 1.7e-35 153.3 139 57.6
Cre12.g555400 Chlamydomonas reinhardtii HOM05D005851 ORTHO05D007137 4.1e-34 148.7 99 67.7
Sed0022049 Sechium edule HOM05D005851 ORTHO05D007137 1.2e-33 147.1 104 70.2
COL.COLO4_23838 Corchorus olitorius HOM05D005851 ORTHO05D007137 1.3e-32 143.7 75 86.7
SEGI_29987 Sequoiadendron giganteum HOM05D005851 ORTHO05D007137 3.9e-32 142.1 86 75.6
Migut.E01010 Erythranthe guttata HOM05D005851 ORTHO05D007137 2.5e-31 139.4 97 67.0
FAN18G0436 Fragaria x ananassa HOM05D005851 ORTHO05D007137 1.0e-29 134.0 134 55.2
Nn1g01189 Nelumbo nucifera HOM05D005851 ORTHO05D007137 2.2e-27 126.3 103 63.1
MCO03G553 Micromonas commoda HOM05D005851 ORTHO05D007137 6.4e-27 124.8 94 60.6
PRCOL_00005435 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 4.1e-26 122.1 99 56.6
PRCOL_00002729 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 2.7e-25 119.4 94 56.4
MCO14G294 Micromonas commoda HOM05D005851 ORTHO05D007137 1.2e-22 110.5 95 51.6
MCO14G091 Micromonas commoda HOM05D005851 ORTHO05D007137 1.6e-22 110.2 110 46.4
MD04G1076900 Malus domestica HOM05D005851 ORTHO05D007137 6.2e-22 108.2 56 91.1
Dinv39057 Davidia involucrata HOM05D005851 ORTHO05D007137 2.3e-21 106.3 55 90.9
Ca_06681_v3 Cicer arietinum L. HOM05D000943 ORTHO05D002475 1.2e-20 104.0 104 50.0
Thecc.03G264400 Theobroma cacao HOM05D005851 ORTHO05D007137 4.4e-20 102.1 90 57.8
Nn4g26436 Nelumbo nucifera HOM05D005851 ORTHO05D007137 3.7e-19 99.0 53 84.9
Lj2A204T50 Lonicera japonica HOM05D005851 ORTHO05D007137 2.4e-18 96.3 49 81.6
Hund14676 Selenicereus undatus HOM05D005851 ORTHO05D007137 3.2e-18 95.9 124 46.0
Eucgr.E00492 Eucalyptus grandis HOM05D005851 ORTHO05D007137 1.2e-17 94.0 61 70.5
ClCG00G004660 Citrullus lanatus HOM05D005851 ORTHO05D007137 6.0e-17 91.7 99 53.5
Lsat_1_v5_gn_6_10241 Lactuca sativa HOM05D005851 ORTHO05D007137 6.0e-17 91.7 51 80.4
ClCG00G000050 Citrullus lanatus HOM05D005851 ORTHO05D007137 1.7e-16 90.1 82 59.8
ClCG00G005270 Citrullus lanatus HOM05D005851 ORTHO05D007137 1.7e-16 90.1 82 59.8
ClCG10G003300 Citrullus lanatus HOM05D005851 ORTHO05D007137 1.7e-16 90.1 82 59.8
arahy.Tifrunner.gnm1.ann1.UAJL6I Arachis hypogaea HOM05D005851 ORTHO05D007137 3.9e-16 89.0 116 45.7
PSO782G0540 Papaver somniferum HOM05D005851 ORTHO05D007137 3.9e-16 89.0 94 54.3
PRCOL_00002728 Prasinoderma coloniale HOM05D005851 ORTHO05D049091 3.9e-16 89.0 103 43.7
unitig_699.g19746 Utricularia gibba HOM05D002021 ORTHO05D002077 3.9e-16 89.0 76 56.6
CBR_g50783 Chara braunii HOM05D000019 ORTHO05D000002 3.6e-14 82.4 55 65.5
BolC3t15330H Brassica oleracea HOM05D005851 ORTHO05D007137 2.3e-08 63.2 41 68.3
Aa31LG6G4700 Aethionema arabicum HOM05D000943 ORTHO05D002475 7.3e-07 58.2 40 72.5
COL.COLO4_23837 Corchorus olitorius HOM05D005851 ORTHO05D007137 1.6e-06 57.0 55 60.0
arahy.Tifrunner.gnm1.ann1.54ECHP Arachis hypogaea HOM05D005851 ORTHO05D007137 4.7e-06 55.5 33 87.9
arahy.Tifrunner.gnm1.ann1.6D2PAS Arachis hypogaea HOM05D005851 ORTHO05D007137 4.7e-06 55.5 33 87.9
arahy.Tifrunner.gnm1.ann1.CS7A8V Arachis hypogaea HOM05D005851 ORTHO05D007137 4.7e-06 55.5 33 87.9
arahy.Tifrunner.gnm1.ann1.IPBJ4Y Arachis hypogaea HOM05D005851 ORTHO05D007137 4.7e-06 55.5 33 87.9
arahy.Tifrunner.gnm1.ann1.Q2BFW3 Arachis hypogaea HOM05D005851 ORTHO05D007137 4.7e-06 55.5 33 87.9
Medtr5g011478 Medicago truncatula HOM05D005851 ORTHO05D007137 8.1e-06 54.7 36 77.8


User provided reference genes

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