Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G142700 Phaseolus vulgaris HOM05D005322 ORTHO05D006746 8.2e-278 959.9 538 100.0
Phvul.010G030900 Phaseolus vulgaris HOM05D005322 ORTHO05D006746 2.0e-167 593.2 523 66.7
Glyma.01G019600 Glycine max HOM05D005322 ORTHO05D006746 5.2e-139 498.8 513 62.2
Glyma.09G203100 Glycine max HOM05D005322 ORTHO05D006746 3.8e-118 429.5 533 53.1
Lj2g0022469 Lotus japonicus HOM05D005322 ORTHO05D006746 3.9e-102 376.3 316 66.5
Ca_25206_v3 Cicer arietinum L. HOM05D005322 ORTHO05D006746 8.1e-100 368.6 538 48.7
Lalb_Chr05g0216181 Lupinus albus HOM05D005322 ORTHO05D006746 1.3e-97 361.3 502 49.8
arahy.Tifrunner.gnm1.ann1.072AWD Arachis hypogaea HOM05D005322 ORTHO05D006746 1.1e-96 358.2 293 66.6
arahy.Tifrunner.gnm1.ann1.BDDW1F Arachis hypogaea HOM05D005322 ORTHO05D006746 1.1e-96 358.2 293 66.6
Medtr7g076850 Medicago truncatula HOM05D005322 ORTHO05D006746 5.4e-96 355.9 290 66.6
Psat2g134960 Pisum sativum HOM05D005322 ORTHO05D006746 1.6e-95 354.4 304 64.1
TPR.G30490 Trifolium pratense HOM05D005322 ORTHO05D006746 5.2e-91 339.3 343 58.3
Medtr5g030750 Medicago truncatula HOM05D005322 ORTHO05D006746 3.7e-89 333.2 348 56.3
Psat5g132240 Pisum sativum HOM05D005322 ORTHO05D006746 3.7e-89 333.2 333 60.1
VMungo0464G0122 Vigna mungo HOM05D000074 ORTHO05D006746 2.7e-87 327.0 247 75.3
Cfa006826 Carpinus fangiana HOM05D005322 ORTHO05D006746 1.9e-69 267.7 603 38.0
Prupe.6G210300 Prunus persica HOM05D005322 ORTHO05D006746 4.8e-68 263.1 544 39.5
Haze_03937 Corylus avellana HOM05D005322 ORTHO05D006746 8.1e-68 262.3 494 40.9
Manes.13G104500 Manihot esculenta HOM05D005322 ORTHO05D006746 1.8e-67 261.2 303 50.5
CiPaw.07G042000 Carya illinoinensis HOM05D005322 ORTHO05D006746 2.0e-66 257.7 607 36.6
Thecc.01G083200 Theobroma cacao HOM05D005322 ORTHO05D006746 2.4e-64 250.8 288 48.3
TWI74G0553 Tripterygium wilfordii HOM05D005322 ORTHO05D006746 7.1e-64 249.2 295 47.8
QL06p037497 Quercus lobata HOM05D005322 ORTHO05D006746 1.2e-63 248.4 516 37.8
CANSAT11G0958 Cannabis sativa HOM05D005322 ORTHO05D006746 1.0e-62 245.4 305 48.9
TAR381G1522 Trochodendron aralioides HOM05D005322 ORTHO05D006746 1.0e-62 245.4 281 50.5
RcHm_v2.0_Chr2g0109931 Rosa chinensis HOM05D005322 ORTHO05D006746 5.1e-62 243.0 302 49.0
MD01G1045600 Malus domestica HOM05D005322 ORTHO05D006746 6.7e-62 242.7 580 39.1
Atru.chr3.1164 Acer truncatum HOM05D005322 ORTHO05D006746 1.1e-61 241.9 539 37.1
Atru.chr3.1145 Acer truncatum HOM05D005322 ORTHO05D006746 1.5e-61 241.5 539 37.1
MD15G1306300 Malus domestica HOM05D005322 ORTHO05D006746 9.6e-61 238.8 554 36.1
Dinv36981 Davidia involucrata HOM05D005322 ORTHO05D006746 1.3e-60 238.4 288 49.0
Manes.12G121000 Manihot esculenta HOM05D005322 ORTHO05D006746 6.2e-60 236.1 290 50.3
Duzib264G0018 Durio zibethinus HOM05D005322 ORTHO05D006746 4.0e-59 233.4 303 48.2
PSO210G4083 Papaver somniferum HOM05D005322 ORTHO05D006746 6.9e-59 232.6 271 49.8
PSO761G0065 Papaver somniferum HOM05D005322 ORTHO05D006746 1.5e-58 231.5 269 49.8
Ciclev10026033m.g Citrus clementina HOM05D005322 ORTHO05D006746 2.0e-58 231.1 312 48.4
Nn5g29007 Nelumbo nucifera HOM05D005322 ORTHO05D006746 1.0e-57 228.8 293 47.4
Rhsim07G0215300 Rhododendron simsii HOM05D005322 ORTHO05D006746 3.8e-57 226.9 299 45.8
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 4.9e-57 226.5 299 46.2
Potri.006G280800 Populus trichocarpa HOM05D005322 ORTHO05D006746 6.5e-57 226.1 304 46.4
ClCG01G018150 Citrullus lanatus HOM05D005322 ORTHO05D006746 1.1e-56 225.3 311 47.6
TWI77G0556 Tripterygium wilfordii HOM05D005322 ORTHO05D006746 1.1e-56 225.3 506 35.8
CSS0004865 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 1.4e-56 224.9 305 46.6
CSS0043740 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 1.4e-56 224.9 305 46.6
MBI16_g26241_MAGBIO Magnolia biondii HOM05D005322 ORTHO05D006746 1.4e-56 224.9 303 47.5
VMungo1215G2194 Vigna mungo HOM05D005322 ORTHO05D006746 2.5e-56 224.2 280 59.6
Cpa.g.sc129.20 Carica papaya HOM05D005322 ORTHO05D006746 3.2e-56 223.8 315 44.8
Oeu030825.1 Olea europaea HOM05D005322 ORTHO05D006746 1.6e-55 221.5 318 44.7
Nn4g23001 Nelumbo nucifera HOM05D005322 ORTHO05D006746 2.1e-55 221.1 284 47.2
Oeu050977.1 Olea europaea HOM05D005322 ORTHO05D006746 2.1e-55 221.1 326 43.6
FAN28G0408 Fragaria x ananassa HOM05D005322 ORTHO05D006746 2.7e-55 220.7 570 34.7
Gorai.007G058000 Gossypium raimondii HOM05D005322 ORTHO05D006746 4.6e-55 219.9 291 46.4
Hma1.2p1_0080F.1_g042150 Hydrangea macrophylla HOM05D005322 ORTHO05D006746 1.0e-54 218.8 538 35.5
Duzib147G0396 Durio zibethinus HOM05D005322 ORTHO05D006746 1.3e-54 218.4 309 46.3
FAN19G2338 Fragaria x ananassa HOM05D005322 ORTHO05D006746 2.3e-54 217.6 580 33.8
AUR62044121 Chenopodium quinoa HOM05D005322 ORTHO05D006746 3.9e-54 216.9 303 45.2
Gorai.003G035800 Gossypium raimondii HOM05D005322 ORTHO05D006746 3.9e-54 216.9 303 43.9
CSS0048225 Camellia sinensis var. sinensis HOM05D005322 ORTHO05D006746 5.1e-54 216.5 301 44.2
FvH4_1g18920 Fragaria vesca HOM05D005322 ORTHO05D006746 8.7e-54 215.7 580 33.8
Nitab4.5_0002103g0070 Nicotiana tabacum HOM05D005322 ORTHO05D006746 8.7e-54 215.7 316 41.5
Gohir.A11G049800 Gossypium hirsutum HOM05D005322 ORTHO05D006746 1.5e-53 214.9 309 45.0
Potri.018G000700 Populus trichocarpa HOM05D005322 ORTHO05D006746 1.5e-53 214.9 372 40.3
Gohir.D03G034100 Gossypium hirsutum HOM05D005322 ORTHO05D006746 2.5e-53 214.2 303 44.2
CsaV3_6G044720 Cucumis sativus L. HOM05D005322 ORTHO05D006746 3.3e-53 213.8 309 43.7
FAN23G1375 Fragaria x ananassa HOM05D005322 ORTHO05D006746 3.3e-53 213.8 386 39.6
EL10Ac6g13300 Beta vulgaris HOM05D005322 ORTHO05D006746 4.3e-53 213.4 304 45.4
Gohir.D11G053300 Gossypium hirsutum HOM05D005322 ORTHO05D006746 4.3e-53 213.4 291 45.7
AUR62002656 Chenopodium quinoa HOM05D005322 ORTHO05D006746 2.1e-52 211.1 306 43.8
HanXRQChr12g0355811 Helianthus annuus HOM05D005322 ORTHO05D006746 2.1e-52 211.1 300 44.7
Hund25262 Selenicereus undatus HOM05D005322 ORTHO05D006746 3.7e-52 210.3 290 43.8
CAN.G179.11 Capsicum annuum HOM05D005322 ORTHO05D006746 4.8e-52 209.9 310 39.7
Aqoxy5G02272 Aquilegia oxysepala HOM05D005322 ORTHO05D006746 1.4e-51 208.4 275 44.4
MELO3C007693.2 Cucumis melo HOM05D005322 ORTHO05D006746 1.4e-51 208.4 300 44.7
Solyc01g068540.3 Solanum lycopersicum HOM05D005322 ORTHO05D006746 1.4e-51 208.4 291 42.3
ECA232G1574 Erigeron canadensis HOM05D005322 ORTHO05D006746 1.8e-51 208.0 300 45.7
Sopen01g030500 Solanum pennellii HOM05D005322 ORTHO05D006746 3.1e-51 207.2 291 41.9
Lsat_1_v5_gn_2_82180 Lactuca sativa HOM05D005322 ORTHO05D006746 1.0e-49 202.2 292 45.9
Ah.02g129230 Amaranthus hybridus HOM05D005322 ORTHO05D006746 3.8e-49 200.3 293 44.7
ECA238G0277 Erigeron canadensis HOM05D000009 ORTHO05D000008 3.8e-49 200.3 299 42.1
THA.LOC104807095 Tarenaya hassleriana HOM05D005322 ORTHO05D006746 5.0e-49 199.9 281 45.9
ECA238G4016 Erigeron canadensis HOM05D005322 ORTHO05D006746 8.4e-49 199.1 299 41.8
Gohir.A02G146400 Gossypium hirsutum HOM05D005322 ORTHO05D006746 1.4e-48 198.4 244 45.1
Sed0015871 Sechium edule HOM05D005322 ORTHO05D006746 1.9e-48 198.0 305 45.6
Aa31LG6G14810 Aethionema arabicum HOM05D005322 ORTHO05D006746 2.5e-48 197.6 542 33.8
SGA_v2.0_scaffold76G25043 Striga asiatica HOM05D005322 ORTHO05D006746 2.5e-48 197.6 313 43.1
MSTRG.8297 Avicennia marina HOM05D005322 ORTHO05D006746 4.2e-48 196.8 294 43.2
Cc07_g07800 Coffea canephora HOM05D005322 ORTHO05D006746 1.2e-47 195.3 288 43.4
Lj5A206G51 Lonicera japonica HOM05D005322 ORTHO05D006746 2.7e-47 194.1 302 43.0
THA.LOC104807657 Tarenaya hassleriana HOM05D005322 ORTHO05D006746 2.3e-46 191.0 322 39.4
PGR031G1473 Punica granatum HOM05D005322 ORTHO05D006746 3.9e-46 190.3 302 43.7
Migut.F01569 Erythranthe guttata HOM05D005322 ORTHO05D006746 6.7e-46 189.5 305 39.7
Peaxi162Scf00309g00413 Petunia axillaris HOM05D005322 ORTHO05D006746 6.7e-46 189.5 235 44.3
Sc22g0002020 Simmondsia chinensis HOM05D005322 ORTHO05D006746 6.7e-46 189.5 296 44.9
vmacro11204 Vaccinium macrocarpon HOM05D005322 ORTHO05D006746 2.5e-45 187.6 368 38.0
SalBow6G3962 Salvia bowleyana HOM05D005322 ORTHO05D006746 2.6e-42 177.6 258 41.9
Thhalv10010289m.g Eutrema salsugineum HOM05D005322 ORTHO05D006746 4.5e-42 176.8 288 41.3
CARHR163340 Cardamine hirsuta HOM05D005322 ORTHO05D006746 1.3e-41 175.3 308 41.2
BcaB01g00273 Brassica carinata HOM05D005322 ORTHO05D006746 1.7e-41 174.9 285 41.1
A09p46440 Brassica napus HOM05D005322 ORTHO05D006746 2.2e-41 174.5 286 41.6
BraA09t40109Z Brassica rapa HOM05D005322 ORTHO05D006746 2.2e-41 174.5 286 41.6
Actinidia11927 Actinidia chinensis HOM05D005322 ORTHO05D006746 1.4e-40 171.8 303 40.9
AT3G53440 Arabidopsis thaliana HOM05D005322 ORTHO05D006746 1.9e-40 171.4 278 40.6
BcaB01g00278 Brassica carinata HOM05D005322 ORTHO05D006746 2.5e-40 171.0 253 41.9
BolC8t50481H Brassica oleracea HOM05D005322 ORTHO05D006746 2.5e-40 171.0 253 41.9
Nitab4.5_0001888g0010 Nicotiana tabacum HOM05D005322 ORTHO05D006746 2.5e-40 171.0 254 39.8
Sp5g08900 Schrenkiella parvula HOM05D005322 ORTHO05D006746 4.2e-40 170.2 278 40.6
AL5G34360 Arabidopsis lyrata HOM05D005322 ORTHO05D006746 2.1e-39 167.9 281 40.9
C08p28800 Brassica napus HOM05D005322 ORTHO05D006746 4.6e-39 166.8 288 39.6
Carub.0005s2001 Capsella rubella HOM05D005322 ORTHO05D006746 1.8e-38 164.9 280 39.6
Zm00001eb297530 Zea mays HOM05D005322 ORTHO05D006746 8.8e-38 162.5 285 37.9
DCAR_025854 Daucus carota HOM05D005322 ORTHO05D006746 2.2e-36 157.9 248 42.7
PGSC0003DMG400000839 Solanum tuberosum HOM05D000365 ORTHO05D000154 4.8e-36 156.8 233 40.3
HPP92_000395 Vanilla planifolia HOM05D005322 ORTHO05D006746 1.3e-33 148.7 286 36.7
Zm00001eb345110 Zea mays HOM05D005322 ORTHO05D006746 1.1e-32 145.6 266 38.7
Nitab4.5_0008618g0020 Nicotiana tabacum HOM05D005322 ORTHO05D006746 5.5e-32 143.3 185 43.2
GSVIVG01008306001 Vitis vinifera HOM05D005322 ORTHO05D006746 2.7e-31 141.0 163 47.9
CDE01G0382 Ceratophyllum demersum HOM05D005322 ORTHO05D006746 2.3e-30 137.9 267 37.8
SHI12143 Sapria himalayana HOM05D005322 ORTHO05D006746 4.5e-26 123.6 223 38.1
SEGI_16708 Sequoiadendron giganteum HOM05D005322 ORTHO05D006746 1.6e-23 115.2 289 31.8
unitig_62.g23938 Utricularia gibba HOM05D005322 ORTHO05D006746 2.7e-23 114.4 281 30.6
Actinidia36382 Actinidia chinensis HOM05D005322 ORTHO05D006746 2.3e-22 111.3 388 31.2
ATR0807G165 Amborella trichopoda HOM05D005322 ORTHO05D006746 6.5e-17 93.2 127 40.2
SEGI_41064 Sequoiadendron giganteum HOM05D005322 ORTHO05D006746 1.1e-16 92.4 265 31.3
Zm00001eb345140 Zea mays HOM05D005322 ORTHO05D006746 2.5e-16 91.3 264 29.2
Rhsim10G0081400 Rhododendron simsii HOM05D005322 ORTHO05D006746 5.7e-13 80.1 310 29.4
MBI16_g31813_MAGBIO Magnolia biondii HOM05D005322 ORTHO05D006746 7.5e-13 79.7 172 35.5
Mapoly0062s0031 Marchantia polymorpha HOM05D005322 ORTHO05D006746 7.7e-10 69.7 243 27.2
AagrBONN_evm.TU.Sc2ySwM_368.532 Anthoceros agrestis HOM05D005322 ORTHO05D006746 1.0e-09 69.3 284 23.9
arahy.Tifrunner.gnm1.ann1.WD7W4L Arachis hypogaea HOM05D001075 ORTHO05D007788 7.2e-08 63.2 57 63.2
Sabra18G0005500 Salix brachista HOM05D005322 ORTHO05D006746 1.0e-06 59.3 49 53.1


User provided reference genes

Program Settings