Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G140700 Phaseolus vulgaris HOM05D004742 ORTHO05D005677 7.1e-122 440.7 228 100.0
VMungo1215G1913 Vigna mungo HOM05D004742 ORTHO05D005677 8.7e-112 407.1 228 92.5
Glyma.09G205100 Glycine max HOM05D004742 ORTHO05D005677 1.4e-101 373.2 234 84.2
Glyma.01G017800 Glycine max HOM05D004742 ORTHO05D005677 5.4e-98 361.3 231 84.0
Ca_06086_v3 Cicer arietinum L. HOM05D004742 ORTHO05D005677 2.1e-86 322.8 224 75.4
TPR.G1023 Trifolium pratense HOM05D004742 ORTHO05D005677 5.3e-85 318.2 229 72.5
Medtr5g030210 Medicago truncatula HOM05D004742 ORTHO05D005677 1.6e-78 296.6 235 71.9
Medtr5g430370 Medicago truncatula HOM05D004742 ORTHO05D005677 1.6e-78 296.6 235 71.9
Lalb_Chr09g0325611 Lupinus albus HOM05D004742 ORTHO05D005677 5.0e-75 285.0 231 71.9
arahy.Tifrunner.gnm1.ann1.EZQY9P Arachis hypogaea HOM05D004742 ORTHO05D005677 3.2e-74 282.3 231 71.0
arahy.Tifrunner.gnm1.ann1.RMRK9P Arachis hypogaea HOM05D004742 ORTHO05D005677 3.2e-74 282.3 231 71.0
Lj2g0023551 Lotus japonicus HOM05D004742 ORTHO05D005677 5.5e-74 281.6 231 68.0
Psat2g136480 Pisum sativum HOM05D004742 ORTHO05D005677 7.9e-73 277.7 228 66.2
Lalb_Chr16g0381321 Lupinus albus HOM05D004742 ORTHO05D005677 8.0e-57 224.6 216 63.4
CANSAT21G2184 Cannabis sativa HOM05D004742 ORTHO05D005677 1.4e-53 213.8 233 55.4
Dinv25223 Davidia involucrata HOM05D004742 ORTHO05D005677 1.8e-53 213.4 229 56.3
COL.COLO4_17015 Corchorus olitorius HOM05D004742 ORTHO05D005677 3.1e-53 212.6 234 57.3
PGR031G2228 Punica granatum HOM05D004742 ORTHO05D005677 2.0e-52 209.9 249 54.2
Thecc.03G226400 Theobroma cacao HOM05D004742 ORTHO05D005677 1.1e-50 204.1 235 53.2
PGSC0003DMG400017538 Solanum tuberosum HOM05D004742 ORTHO05D005677 2.5e-50 203.0 251 52.2
Prupe.5G034500 Prunus persica HOM05D004742 ORTHO05D005677 5.5e-50 201.8 241 56.0
CiPaw.11G094200 Carya illinoinensis HOM05D004742 ORTHO05D005677 2.1e-49 199.9 238 53.4
Lsat_1_v5_gn_3_18001 Lactuca sativa HOM05D004742 ORTHO05D005677 3.6e-49 199.1 248 53.6
Gohir.A08G156100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 4.7e-49 198.7 231 51.9
Duzib205G0563 Durio zibethinus HOM05D004742 ORTHO05D005677 6.1e-49 198.4 238 51.7
Sopen08g025400 Solanum pennellii HOM05D004742 ORTHO05D005677 8.0e-49 198.0 254 51.6
Duzib084G1225 Durio zibethinus HOM05D004742 ORTHO05D005677 1.8e-48 196.8 231 49.4
Cfa012451 Carpinus fangiana HOM05D004742 ORTHO05D005677 2.3e-48 196.4 229 51.5
Nitab4.5_0010403g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 3.0e-48 196.1 255 49.8
Solyc08g076870.1 Solanum lycopersicum HOM05D004742 ORTHO05D005677 5.2e-48 195.3 254 50.8
CSS0004262 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 6.8e-48 194.9 234 52.1
QL12p005003 Quercus lobata HOM05D004742 ORTHO05D005677 6.8e-48 194.9 232 53.0
Actinidia14802 Actinidia chinensis HOM05D004742 ORTHO05D005677 1.5e-47 193.7 230 53.5
CSS0028083 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 1.5e-47 193.7 234 51.7
MD06G1035300 Malus domestica HOM05D004742 ORTHO05D005677 1.5e-47 193.7 247 50.2
TWI60G1233 Tripterygium wilfordii HOM05D004742 ORTHO05D005677 1.5e-47 193.7 233 54.1
ClCG10G001520 Citrullus lanatus HOM05D004742 ORTHO05D005677 2.0e-47 193.4 237 53.6
Duzib084G0476 Durio zibethinus HOM05D004742 ORTHO05D005677 7.5e-47 191.4 231 48.9
Nn1g00114 Nelumbo nucifera HOM05D004742 ORTHO05D005677 9.8e-47 191.0 239 50.6
MELO3C027362.2 Cucumis melo HOM05D004742 ORTHO05D005677 1.3e-46 190.7 235 53.6
FvH4_5g22200 Fragaria vesca HOM05D004742 ORTHO05D005677 1.3e-46 190.7 240 48.8
FAN08G0406 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.7e-46 190.3 240 48.8
CsaV3_3G001600 Cucumis sativus L. HOM05D004742 ORTHO05D005677 3.7e-46 189.1 237 52.3
FAN13G2654 Fragaria x ananassa HOM05D004742 ORTHO05D005677 3.7e-46 189.1 240 47.9
Gohir.A09G199100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 8.3e-46 188.0 233 49.8
Gohir.D08G176700 Gossypium hirsutum HOM05D004742 ORTHO05D005677 8.3e-46 188.0 230 50.4
Gorai.004G184600 Gossypium raimondii HOM05D004742 ORTHO05D005677 8.3e-46 188.0 230 50.4
FAN04G2756 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.1e-45 187.6 240 47.5
FAN18G2180 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.4e-45 187.2 240 48.3
Hma1.2p1_0303F.1_g119030 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 2.4e-45 186.4 238 54.6
MD16G1273500 Malus domestica HOM05D004742 ORTHO05D005677 2.4e-45 186.4 243 49.4
CiPaw.12G064300 Carya illinoinensis HOM05D004742 ORTHO05D005677 7.0e-45 184.9 231 50.6
Gorai.006G216900 Gossypium raimondii HOM05D004742 ORTHO05D005677 2.0e-44 183.3 233 51.1
RcHm_v2.0_Chr7g0209881 Rosa chinensis HOM05D004742 ORTHO05D005677 2.0e-44 183.3 244 51.2
Manes.17G011300 Manihot esculenta HOM05D004742 ORTHO05D005677 3.5e-44 182.6 239 48.5
Eucgr.D02205 Eucalyptus grandis HOM05D004742 ORTHO05D005677 5.9e-44 181.8 237 49.4
Haze_08216 Corylus avellana HOM05D004742 ORTHO05D005677 7.7e-44 181.4 229 48.5
Duzib068G0638 Durio zibethinus HOM05D004742 ORTHO05D005677 1.0e-43 181.0 233 50.6
Potri.001G141600 Populus trichocarpa HOM05D004742 ORTHO05D005677 1.7e-43 180.3 240 48.3
TAR636G0473 Trochodendron aralioides HOM05D004742 ORTHO05D005677 1.7e-43 180.3 230 50.9
HanXRQChr17g0536221 Helianthus annuus HOM05D004742 ORTHO05D005677 2.2e-43 179.9 244 51.2
Gohir.D09G193400 Gossypium hirsutum HOM05D004742 ORTHO05D005677 8.5e-43 177.9 233 49.8
Sabra03G0062000 Salix brachista HOM05D004742 ORTHO05D001134 5.5e-42 175.3 222 48.2
CSS0042903 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 7.2e-42 174.9 230 45.7
Nitab4.5_0000529g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 7.2e-42 174.9 258 46.1
Actinidia03372 Actinidia chinensis HOM05D004742 ORTHO05D005677 9.4e-42 174.5 250 48.8
Ah.12g055130 Amaranthus hybridus HOM05D004742 ORTHO05D005677 1.6e-41 173.7 229 48.9
TAR374G0395 Trochodendron aralioides HOM05D004742 ORTHO05D005677 2.7e-41 172.9 231 48.9
Gorai.007G032300 Gossypium raimondii HOM05D004742 ORTHO05D005677 3.6e-41 172.6 230 43.9
Lj3A410T15 Lonicera japonica HOM05D004742 ORTHO05D005677 3.6e-41 172.6 230 51.7
Gohir.A11G030800 Gossypium hirsutum HOM05D004742 ORTHO05D005677 5.2e-40 168.7 233 47.2
Manes.15G188900 Manihot esculenta HOM05D004742 ORTHO05D005677 6.8e-40 168.3 237 48.1
Gohir.D11G029500 Gossypium hirsutum HOM05D004742 ORTHO05D005677 2.6e-39 166.4 233 44.2
Potri.003G092700 Populus trichocarpa HOM05D004742 ORTHO05D005677 4.4e-39 165.6 242 46.3
Rhsim07G0128300 Rhododendron simsii HOM05D004742 ORTHO05D005677 9.8e-39 164.5 225 46.2
Actinidia25968 Actinidia chinensis HOM05D004742 ORTHO05D005677 4.9e-38 162.2 254 46.5
Ciclev10016629m.g Citrus clementina HOM05D004742 ORTHO05D005677 4.9e-38 162.2 236 47.9
CSS0044674 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 1.4e-37 160.6 217 47.9
Atru.chr6.1683 Acer truncatum HOM05D004742 ORTHO05D005677 1.8e-37 160.2 234 47.4
SalBow6G3311 Salvia bowleyana HOM05D004742 ORTHO05D005677 4.1e-37 159.1 246 43.5
Oeu006253.1 Olea europaea HOM05D004742 ORTHO05D005677 5.4e-37 158.7 242 47.1
Migut.E00942 Erythranthe guttata HOM05D004742 ORTHO05D005677 1.2e-36 157.5 241 43.6
EL10Ac5g12098 Beta vulgaris HOM05D004742 ORTHO05D005677 5.9e-36 155.2 228 47.4
Lsat_1_v5_gn_6_421 Lactuca sativa HOM05D004742 ORTHO05D005677 1.0e-35 154.5 239 46.4
HanXRQChr06g0167541 Helianthus annuus HOM05D004742 ORTHO05D005677 1.9e-34 150.2 231 42.4
TAR629G2541 Trochodendron aralioides HOM05D004742 ORTHO05D005677 4.2e-34 149.1 205 47.8
Hma1.2p1_0574F.1_g181490 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 4.7e-33 145.6 270 42.2
Sed0001883 Sechium edule HOM05D004742 ORTHO05D005677 1.4e-32 144.1 238 46.6
DCAR_008263 Daucus carota HOM05D004742 ORTHO05D005677 1.2e-31 141.0 246 42.3
DCAR_032208 Daucus carota HOM05D004742 ORTHO05D005677 2.6e-31 139.8 224 38.8
MSTRG.12162 Avicennia marina HOM05D004742 ORTHO05D005677 3.4e-31 139.4 237 39.7
THA.LOC104814447 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 5.7e-31 138.7 245 38.8
Cc08_g02870 Coffea canephora HOM05D004742 ORTHO05D005677 1.7e-30 137.1 261 41.4
EL10Ac5g12097 Beta vulgaris HOM05D004742 ORTHO05D005677 2.9e-30 136.3 219 42.5
THA.LOC104812742 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 4.9e-30 135.6 240 39.2
SGA_v2.0_scaffold6G03142 Striga asiatica HOM05D004742 ORTHO05D005677 1.8e-29 133.7 239 38.9
Thhalv10008795m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 9.2e-29 131.3 236 40.3
Aqoxy3G02336 Aquilegia oxysepala HOM05D004742 ORTHO05D005677 2.7e-28 129.8 259 41.7
CARHR032080 Cardamine hirsuta HOM05D004742 ORTHO05D005677 2.7e-28 129.8 236 42.8
Sp4g17420 Schrenkiella parvula HOM05D004742 ORTHO05D005677 4.6e-28 129.0 230 39.6
Rhsim11G0016100 Rhododendron simsii HOM05D004742 ORTHO05D005677 7.8e-28 128.3 209 45.9
Nitab4.5_0008566g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 1.3e-27 127.5 223 39.9
Aa31LG2G13280 Aethionema arabicum HOM05D004742 ORTHO05D005677 2.3e-27 126.7 240 40.8
BcaB03g13715 Brassica carinata HOM05D004742 ORTHO05D005677 2.9e-27 126.3 234 43.2
A05p24650 Brassica napus HOM05D004742 ORTHO05D005677 8.6e-27 124.8 229 42.8
BraA05t21351Z Brassica rapa HOM05D004742 ORTHO05D005677 8.6e-27 124.8 229 42.8
Aa31LG9G15210 Aethionema arabicum HOM05D004742 ORTHO05D005677 1.5e-26 124.0 245 37.1
Carub.0001s3103 Capsella rubella HOM05D004742 ORTHO05D005677 2.1e-25 120.2 234 41.9
BcaC01g01725 Brassica carinata HOM05D004742 ORTHO05D005677 2.8e-25 119.8 233 37.8
C03p72460 Brassica napus HOM05D004742 ORTHO05D005677 2.8e-25 119.8 233 37.8
DCAR_004297 Daucus carota HOM05D004742 ORTHO05D005677 2.8e-25 119.8 231 35.1
Thhalv10017262m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 2.8e-25 119.8 230 37.8
BolC3t19547H Brassica oleracea HOM05D004742 ORTHO05D005677 3.6e-25 119.4 233 37.8
Carub.0004s1689 Capsella rubella HOM05D004742 ORTHO05D005677 3.6e-25 119.4 238 37.4
SGA_v2.0_scaffold20G09271 Striga asiatica HOM05D004742 ORTHO05D005677 1.4e-24 117.5 235 35.7
AL1G46920 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 1.8e-24 117.1 240 41.2
BcaC05g27832 Brassica carinata HOM05D004742 ORTHO05D005677 2.3e-24 116.7 228 39.0
C05p38300 Brassica napus HOM05D004742 ORTHO05D005677 2.3e-24 116.7 228 39.0
BolC5t32562H Brassica oleracea HOM05D004742 ORTHO05D005677 2.3e-24 116.7 228 39.0
AT1G32690 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 3.1e-24 116.3 238 40.8
Sp1g28270 Schrenkiella parvula HOM05D004742 ORTHO05D005677 5.2e-24 115.5 239 37.2
BcaC02g11593 Brassica carinata HOM05D004742 ORTHO05D005677 1.2e-23 114.4 225 36.4
HanXRQChr12g0360911 Helianthus annuus HOM05D004742 ORTHO05D005677 1.5e-23 114.0 229 36.2
A05p10550 Brassica napus HOM05D004742 ORTHO05D005677 5.8e-23 112.1 225 36.4
BraA05t19993Z Brassica rapa HOM05D004742 ORTHO05D005677 5.8e-23 112.1 225 36.4
CARHR129360 Cardamine hirsuta HOM05D004742 ORTHO05D005677 4.9e-22 109.0 226 36.7
C04p13600 Brassica napus HOM05D004742 ORTHO05D005677 3.2e-21 106.3 222 35.1
HPP92_014611 Vanilla planifolia HOM05D004742 ORTHO05D005677 5.4e-21 105.5 217 37.8
BolC4t22951H Brassica oleracea HOM05D004742 ORTHO05D005677 9.2e-21 104.8 221 34.8
TAR375G0192 Trochodendron aralioides HOM05D004742 ORTHO05D005677 9.2e-21 104.8 158 42.4
HPP92_020967 Vanilla planifolia HOM05D004742 ORTHO05D005677 1.2e-20 104.4 214 36.9
AL4G31210 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 2.7e-20 103.2 244 32.4
AUR62018706 Chenopodium quinoa HOM05D004742 ORTHO05D005677 4.6e-20 102.4 230 33.5
MBI04_g25303_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 6.0e-20 102.1 217 35.0
ECA233G6051 Erigeron canadensis HOM05D007880 ORTHO05D003386 3.9e-19 99.4 221 38.9
AT2G35200 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 1.9e-18 97.1 236 34.3
Nitab4.5_0006434g0030 Nicotiana tabacum HOM05D004742 ORTHO05D005677 4.3e-18 95.9 145 42.1
MBI04_g46668_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 2.8e-17 93.2 200 34.5
PSO210G7694 Papaver somniferum HOM05D004742 ORTHO05D005677 2.8e-17 93.2 254 32.7
PGSC0003DMG400017843 Solanum tuberosum HOM05D004742 ORTHO05D005677 8.9e-16 88.2 292 30.8
Peaxi162Scf00045g00023 Petunia axillaris HOM05D004742 ORTHO05D005677 5.8e-15 85.5 189 33.3
Solyc08g005090.2 Solanum lycopersicum HOM05D004742 ORTHO05D005677 1.7e-14 84.0 302 29.5
Zm00001eb251250 Zea mays HOM05D004742 ORTHO05D005677 6.4e-14 82.0 146 40.4
Lj8P301T9 Lonicera japonica HOM05D004742 ORTHO05D005677 1.4e-13 80.9 143 42.7
CDE06G1944 Ceratophyllum demersum HOM05D003296 ORTHO05D003720 4.1e-13 79.3 200 36.0
Sopen08g001110 Solanum pennellii HOM05D004742 ORTHO05D005677 7.1e-13 78.6 296 29.1
CDE11G0293 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 1.2e-12 77.8 102 44.1
Os02g0693000 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 3.9e-11 72.8 86 50.0
Os04g0591300 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 7.3e-10 68.6 206 35.9
CDE03G0209 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 2.8e-09 66.6 164 36.6
ATR0665G540 Amborella trichopoda HOM05D004742 ORTHO05D005677 4.0e-08 62.8 231 29.0
AUR62007299 Chenopodium quinoa HOM05D004742 ORTHO05D005677 5.2e-08 62.4 136 40.4
Zm00001eb072350 Zea mays HOM05D004742 ORTHO05D005677 8.9e-08 61.6 87 47.1
COL.COLO4_27716 Corchorus olitorius HOM05D004568 ORTHO05D005343 2.0e-07 60.5 87 41.4


User provided reference genes

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