Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G140000 Phaseolus vulgaris HOM05D006310 ORTHO05D007768 1.8e-105 386.3 266 100.0
VMungo1080G0874 Vigna mungo HOM05D006310 ORTHO05D007768 5.2e-68 261.9 180 74.4
VMungo1215G2715 Vigna mungo HOM05D006310 ORTHO05D007768 8.4e-66 254.6 180 73.3
Glyma.01G017000 Glycine max HOM05D006310 ORTHO05D007768 6.4e-50 201.8 266 72.2
Glyma.09G205800 Glycine max HOM05D006310 ORTHO05D007768 5.3e-44 182.2 181 61.9
Lj2g0018875 Lotus japonicus HOM05D006310 ORTHO05D007768 9.3e-41 171.4 187 55.6
arahy.Tifrunner.gnm1.ann1.P6RCLW Arachis hypogaea HOM05D006310 ORTHO05D007768 2.6e-35 153.3 183 52.5
arahy.Tifrunner.gnm1.ann1.U64MAA Arachis hypogaea HOM05D006310 ORTHO05D007768 2.6e-35 153.3 183 52.5
Lalb_Chr05g0215911 Lupinus albus HOM05D006310 ORTHO05D007768 5.9e-35 152.1 193 50.8
Ca_25198_v3 Cicer arietinum L. HOM05D006310 ORTHO05D007768 8.5e-34 148.3 185 51.9
Medtr5g029910 Medicago truncatula HOM05D006310 ORTHO05D007768 3.3e-30 136.3 185 47.6
Psat2g137200 Pisum sativum HOM05D006310 ORTHO05D007768 4.8e-29 132.5 185 49.7
Dinv28973 Davidia involucrata HOM05D006310 ORTHO05D007768 3.0e-23 113.2 221 40.3
Haze_08202 Corylus avellana HOM05D006310 ORTHO05D007768 2.0e-22 110.5 201 44.3
QL12p004739 Quercus lobata HOM05D006310 ORTHO05D007768 4.1e-20 102.8 199 42.7
Cfa012467 Carpinus fangiana HOM05D006310 ORTHO05D007768 6.9e-20 102.1 195 42.6
Actinidia03362 Actinidia chinensis HOM05D006310 ORTHO05D007768 1.5e-19 100.9 187 41.7
CiPaw.12G065800 Carya illinoinensis HOM05D006310 ORTHO05D007768 2.6e-19 100.1 210 41.4
CSS0006923 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 1.7e-18 97.4 198 39.9
Dinv25232 Davidia involucrata HOM05D006310 ORTHO05D007768 3.8e-18 96.3 216 37.0
Gohir.D08G176100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 6.5e-18 95.5 194 39.2
Gohir.A08G155500 Gossypium hirsutum HOM05D006310 ORTHO05D007768 1.9e-17 94.0 194 39.2
Hma1.2p1_1379F.1_g279220 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 1.9e-17 94.0 190 40.5
Gorai.004G183900 Gossypium raimondii HOM05D006310 ORTHO05D007768 4.2e-17 92.8 194 38.7
Actinidia25977 Actinidia chinensis HOM05D006310 ORTHO05D007768 5.5e-17 92.4 182 41.2
MD06G1036900 Malus domestica HOM05D006310 ORTHO05D007768 5.5e-17 92.4 178 42.7
CSS0048597 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 1.2e-16 91.3 197 38.6
Hma1.2p1_0303F.1_g118950 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 1.2e-16 91.3 205 36.1
Prupe.5G032400 Prunus persica HOM05D006310 ORTHO05D007768 1.6e-16 90.9 182 40.7
THA.LOC104827750 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 2.1e-16 90.5 194 39.2
COL.COLO4_16996 Corchorus olitorius HOM05D006310 ORTHO05D007768 3.6e-16 89.7 214 34.6
Thecc.03G224800 Theobroma cacao HOM05D006310 ORTHO05D007768 3.6e-16 89.7 212 34.0
DCAR_008251 Daucus carota HOM05D006310 ORTHO05D007768 4.7e-16 89.4 198 37.9
Duzib205G0324 Durio zibethinus HOM05D006310 ORTHO05D007768 6.1e-16 89.0 207 34.3
CANSAT21G0851 Cannabis sativa HOM05D006310 ORTHO05D007768 1.0e-15 88.2 197 37.1
Lj2A236G56 Lonicera japonica HOM05D006310 ORTHO05D007768 1.0e-15 88.2 205 36.1
Duzib084G0468 Durio zibethinus HOM05D006310 ORTHO05D007768 3.0e-15 86.7 212 34.9
Atru.chr6.1649 Acer truncatum HOM05D006310 ORTHO05D007768 3.9e-15 86.3 195 36.4
TWI15G1132 Tripterygium wilfordii HOM05D006310 ORTHO05D007768 5.2e-15 85.9 204 36.8
Actinidia14793 Actinidia chinensis HOM05D006310 ORTHO05D007768 1.1e-14 84.7 202 35.6
Potri.001G140500 Populus trichocarpa HOM05D006310 ORTHO05D007768 1.1e-14 84.7 186 38.7
Sabra01G0109300 Salix brachista HOM05D006310 ORTHO05D007768 2.0e-14 84.0 183 37.7
GSVIVG01013133001 Vitis vinifera HOM05D006310 ORTHO05D007768 5.7e-14 82.4 68 61.8
Sed0010075 Sechium edule HOM05D006310 ORTHO05D007768 9.7e-14 81.6 196 36.7
vmacro00314 Vaccinium macrocarpon HOM05D006310 ORTHO05D007768 2.2e-13 80.5 194 35.6
CiPaw.11G095600 Carya illinoinensis HOM05D006310 ORTHO05D007768 2.8e-13 80.1 189 38.6
Oeu006245.1 Olea europaea HOM05D006310 ORTHO05D007768 4.8e-13 79.3 191 33.5
CAN.G298.28 Capsicum annuum HOM05D006310 ORTHO05D007768 8.2e-13 78.6 211 34.1
Nitab4.5_0000127g0100 Nicotiana tabacum HOM05D006310 ORTHO05D007768 2.4e-12 77.0 221 32.1
MSTRG.13750 Avicennia marina HOM05D006310 ORTHO05D007768 3.1e-12 76.6 188 36.7
Eucgr.D02211 Eucalyptus grandis HOM05D006310 ORTHO05D007768 3.1e-12 76.6 212 35.4
Gohir.A11G031400 Gossypium hirsutum HOM05D006310 ORTHO05D007768 4.1e-12 76.3 212 33.0
Manes.15G192960 Manihot esculenta HOM05D006310 ORTHO05D007768 4.1e-12 76.3 197 37.6
PGSC0003DMG400017523 Solanum tuberosum HOM05D006310 ORTHO05D007768 5.3e-12 75.9 222 35.1
ClCG09G011810 Citrullus lanatus HOM05D006310 ORTHO05D007768 7.0e-12 75.5 192 33.9
Gorai.007G033000 Gossypium raimondii HOM05D006310 ORTHO05D007768 9.1e-12 75.1 203 35.0
Cc08_g03010 Coffea canephora HOM05D006310 ORTHO05D007768 1.2e-11 74.7 208 35.1
FAN08G3522 Fragaria x ananassa HOM05D006310 ORTHO05D007768 1.2e-11 74.7 186 38.7
Sp7g16170 Schrenkiella parvula HOM05D006310 ORTHO05D007768 1.2e-11 74.7 191 33.5
Nitab4.5_0003625g0020 Nicotiana tabacum HOM05D006310 ORTHO05D007768 1.6e-11 74.3 221 34.8
Thhalv10026016m.g Eutrema salsugineum HOM05D006310 ORTHO05D007768 2.0e-11 73.9 193 34.7
FAN18G3281 Fragaria x ananassa HOM05D006310 ORTHO05D007768 2.6e-11 73.6 178 39.3
THA.LOC104806719 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 2.6e-11 73.6 202 31.7
FvH4_5g22450 Fragaria vesca HOM05D006310 ORTHO05D007768 5.9e-11 72.4 190 37.9
CsaV3_3G049010 Cucumis sativus L. HOM05D006310 ORTHO05D007768 7.7e-11 72.0 191 34.6
Lsat_1_v5_gn_3_18800 Lactuca sativa HOM05D006310 ORTHO05D007768 1.0e-10 71.6 199 35.2
Rhsim11G0017700 Rhododendron simsii HOM05D006310 ORTHO05D007768 1.3e-10 71.2 185 35.7
Gohir.D11G030100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 1.7e-10 70.9 207 34.3
ECA246G3187 Erigeron canadensis HOM05D006310 ORTHO05D007768 2.2e-10 70.5 188 31.4
FAN04G1670 Fragaria x ananassa HOM05D006310 ORTHO05D007768 2.2e-10 70.5 178 38.8
FAN18G0493 Fragaria x ananassa HOM05D006310 ORTHO05D007768 2.2e-10 70.5 52 67.3
Sopen08g025280 Solanum pennellii HOM05D006310 ORTHO05D007768 2.2e-10 70.5 223 35.0
Solyc08g076730.4 Solanum lycopersicum HOM05D006310 ORTHO05D007768 5.0e-10 69.3 223 35.0
Cpa.g.sc90.63 Carica papaya HOM05D006310 ORTHO05D007768 6.5e-10 68.9 208 33.7
ATR0665G126 Amborella trichopoda HOM05D006310 ORTHO05D007768 8.5e-10 68.6 70 50.0
TAR629G1434 Trochodendron aralioides HOM05D006310 ORTHO05D007768 2.5e-09 67.0 227 35.2
Aa31LG6G690 Aethionema arabicum HOM05D006310 ORTHO05D007768 3.2e-09 66.6 190 36.8
CDE06G1171 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 3.2e-09 66.6 192 29.7
MBI04_g20344_MAGBIO Magnolia biondii HOM05D006310 ORTHO05D007768 4.2e-09 66.2 222 31.5
BcaB04g18451 Brassica carinata HOM05D006310 ORTHO05D007768 5.5e-09 65.9 187 34.8
BcaNung00042 Brassica carinata HOM05D006310 ORTHO05D007768 7.2e-09 65.5 177 32.8
MELO3C003424.2 Cucumis melo HOM05D006310 ORTHO05D007768 7.2e-09 65.5 184 34.2
CARHR224680 Cardamine hirsuta HOM05D006310 ORTHO05D007768 9.4e-09 65.1 186 33.3
RcHm_v2.0_Chr7g0210241 Rosa chinensis HOM05D006310 ORTHO05D007768 9.4e-09 65.1 87 48.3
Actinidia09184 Actinidia chinensis HOM05D006310 ORTHO05D007768 2.1e-08 63.9 201 33.8
AL7G36570 Arabidopsis lyrata HOM05D006310 ORTHO05D007768 2.7e-08 63.5 189 32.8
BraA08t33321Z Brassica rapa HOM05D006310 ORTHO05D007768 2.7e-08 63.5 194 36.6
A08p13440 Brassica napus HOM05D006310 ORTHO05D007768 3.6e-08 63.2 196 35.2
BolC8t48532H Brassica oleracea HOM05D006310 ORTHO05D007768 8.0e-08 62.0 185 33.0
Migut.E00791 Erythranthe guttata HOM05D006310 ORTHO05D007768 8.0e-08 62.0 192 29.2
HanXRQChr06g0167641 Helianthus annuus HOM05D006310 ORTHO05D007768 8.0e-08 62.0 64 54.7
AT4G17940 Arabidopsis thaliana HOM05D006310 ORTHO05D007768 1.0e-07 61.6 190 32.1
PSO782G4606 Papaver somniferum HOM05D006310 ORTHO05D007768 1.0e-07 61.6 69 47.8
BraA01t00942Z Brassica rapa HOM05D006310 ORTHO05D007768 1.8e-07 60.8 41 68.3
Nn3g19447 Nelumbo nucifera HOM05D006310 ORTHO05D007768 2.3e-07 60.5 205 30.7
EL10Ac5g12081 Beta vulgaris HOM05D006310 ORTHO05D007768 3.0e-07 60.1 41 63.4
Ciclev10009202m.g Citrus clementina HOM05D001903 ORTHO05D001847 3.0e-07 60.1 185 33.0
CDE02G1298 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 4.0e-07 59.7 41 63.4
Cc01_g17810 Coffea canephora HOM05D007706 ORTHO05D009593 4.0e-07 59.7 74 41.9
PGR031G3884 Punica granatum HOM05D006310 ORTHO05D007768 4.0e-07 59.7 219 32.0
unitig_699.g19788 Utricularia gibba HOM05D006310 ORTHO05D007768 4.0e-07 59.7 47 59.6
PSO063G6445 Papaver somniferum HOM05D006310 ORTHO05D007768 5.2e-07 59.3 204 31.4
Carub.0007s2340 Capsella rubella HOM05D006310 ORTHO05D007768 6.7e-07 58.9 207 30.4
BcaC09g51583 Brassica carinata HOM05D006310 ORTHO05D007768 1.5e-06 57.8 40 65.0
A01p09980 Brassica napus HOM05D006310 ORTHO05D007768 1.5e-06 57.8 174 33.3
BolC1t01140H Brassica oleracea HOM05D006310 ORTHO05D007768 1.5e-06 57.8 40 65.0
CDE11G1127 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 1.5e-06 57.8 44 56.8
Mapoly0003s0253 Marchantia polymorpha HOM05D036240 ORTHO05D031199 3.3e-06 56.6 64 51.6
BcaC07g38109 Brassica carinata HOM05D006310 ORTHO05D007768 4.4e-06 56.2 186 32.3
Glyma.19G168300 Glycine max HOM05D007706 ORTHO05D009593 4.4e-06 56.2 54 50.0
HanXRQChr17g0536151 Helianthus annuus HOM05D006310 ORTHO05D007768 4.4e-06 56.2 73 46.6
SEGI_03197 Sequoiadendron giganteum HOM05D006310 ORTHO05D007768 4.4e-06 56.2 62 53.2
Actinidia15989 Actinidia chinensis HOM05D001903 ORTHO05D001847 7.5e-06 55.5 58 46.6
Lj3g0010604 Lotus japonicus HOM05D001903 ORTHO05D001847 7.5e-06 55.5 60 51.7


User provided reference genes

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