Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G138300 Phaseolus vulgaris HOM05D007450 ORTHO05D009377 4.6e-47 191.0 108 100.0
Glyma.09G206700 Glycine max HOM05D007450 ORTHO05D009377 1.3e-38 162.9 112 88.4
Glyma.01G015700 Glycine max HOM05D007450 ORTHO05D009377 8.7e-38 160.2 112 86.6
Medtr5g029660 Medicago truncatula HOM05D007450 ORTHO05D009377 1.7e-33 146.0 113 70.8
Psat2g138000 Pisum sativum HOM05D007450 ORTHO05D009377 4.2e-32 141.4 113 69.0
Ca_08150_v3 Cicer arietinum L. HOM05D007450 ORTHO05D009377 3.0e-30 135.2 113 71.7
TPR.G8094 Trifolium pratense HOM05D007450 ORTHO05D009377 3.3e-29 131.7 116 67.2
Lj2g0017142 Lotus japonicus HOM05D007450 ORTHO05D009377 2.0e-26 122.5 114 63.2
VMungo1215G2816 Vigna mungo HOM05D007450 ORTHO05D009377 1.3e-25 119.8 94 81.9
CiPaw.11G096800 Carya illinoinensis HOM05D007450 ORTHO05D009377 2.2e-25 119.0 112 58.9
Lalb_Chr05g0215841 Lupinus albus HOM05D007450 ORTHO05D009377 5.0e-25 117.9 88 71.6
Cfa012487 Carpinus fangiana HOM05D007450 ORTHO05D009377 7.2e-24 114.0 112 58.0
FAN08G0787 Fragaria x ananassa HOM05D007450 ORTHO05D009377 1.6e-23 112.8 113 55.8
Prupe.5G030900 Prunus persica HOM05D007450 ORTHO05D009377 3.6e-23 111.7 112 53.6
FvH4_5g22750 Fragaria vesca HOM05D007450 ORTHO05D009377 2.3e-22 109.0 113 54.0
FAN18G1197 Fragaria x ananassa HOM05D007450 ORTHO05D009377 2.3e-22 109.0 113 54.0
FAN18G1518 Fragaria x ananassa HOM05D007450 ORTHO05D009377 2.3e-22 109.0 113 54.0
TAR629G3037 Trochodendron aralioides HOM05D007450 ORTHO05D009377 2.3e-22 109.0 114 57.9
FAN04G2147 Fragaria x ananassa HOM05D007450 ORTHO05D009377 8.8e-22 107.1 113 54.0
RcHm_v2.0_Chr7g0211351 Rosa chinensis HOM05D007450 ORTHO05D009377 3.3e-21 105.1 113 53.1
FAN13G0277 Fragaria x ananassa HOM05D007450 ORTHO05D009377 5.7e-21 104.4 113 52.2
FAN13G1033 Fragaria x ananassa HOM05D007450 ORTHO05D009377 5.7e-21 104.4 113 52.2
Manes.14G162800 Manihot esculenta HOM05D007450 ORTHO05D009377 5.7e-21 104.4 109 56.0
CANSAT21G1074 Cannabis sativa HOM05D007450 ORTHO05D009377 4.8e-20 101.3 112 62.5
Atru.chr6.1639 Acer truncatum HOM05D007450 ORTHO05D009377 1.4e-19 99.8 112 61.6
Potri.001G138700 Populus trichocarpa HOM05D007450 ORTHO05D009377 1.8e-19 99.4 112 57.1
Gohir.A12G207000 Gossypium hirsutum HOM05D007450 ORTHO05D009377 2.4e-19 99.0 112 52.7
Gohir.D12G209400 Gossypium hirsutum HOM05D007450 ORTHO05D009377 2.4e-19 99.0 112 61.6
arahy.Tifrunner.gnm1.ann1.UE78BX Arachis hypogaea HOM05D007450 ORTHO05D009377 5.3e-19 97.8 93 74.2
arahy.Tifrunner.gnm1.ann1.XXZI65 Arachis hypogaea HOM05D007450 ORTHO05D009377 5.3e-19 97.8 93 74.2
Duzib205G1651 Durio zibethinus HOM05D007450 ORTHO05D009377 1.2e-18 96.7 112 50.9
MD06G1038000 Malus domestica HOM05D007450 ORTHO05D009377 7.7e-18 94.0 112 51.8
Sed0022287 Sechium edule HOM05D007450 ORTHO05D009377 5.0e-17 91.3 104 51.0
CSS0005314 Camellia sinensis var. sinensis HOM05D007450 ORTHO05D009377 1.1e-16 90.1 110 47.3
PGR031G1038 Punica granatum HOM05D007450 ORTHO05D009377 1.1e-16 90.1 112 49.1
THA.LOC104798592 Tarenaya hassleriana HOM05D007450 ORTHO05D009377 1.1e-16 90.1 107 57.0
Dinv25243 Davidia involucrata HOM05D007450 ORTHO05D009377 2.5e-16 89.0 110 47.3
QL12p004405 Quercus lobata HOM05D007450 ORTHO05D009377 2.5e-16 89.0 94 56.4
THA.LOC104808475 Tarenaya hassleriana HOM05D007450 ORTHO05D009377 3.2e-16 88.6 108 49.1
Thhalv10009436m.g Eutrema salsugineum HOM05D007450 ORTHO05D009377 4.2e-16 88.2 113 55.8
Sp1g27980 Schrenkiella parvula HOM05D007450 ORTHO05D009377 4.2e-16 88.2 100 58.0
AT1G32310 Arabidopsis thaliana HOM05D007450 ORTHO05D009377 1.6e-15 86.3 105 58.1
GSVIVG01013568001 Vitis vinifera HOM05D007450 ORTHO05D009377 1.6e-15 86.3 93 51.6
BcaC05g27880 Brassica carinata HOM05D007450 ORTHO05D009377 2.1e-15 85.9 100 60.0
MELO3C003430.2 Cucumis melo HOM05D007450 ORTHO05D009377 2.1e-15 85.9 100 51.0
Sabra01G0107700 Salix brachista HOM05D007450 ORTHO05D009377 2.1e-15 85.9 92 59.8
Thecc.03G307400 Theobroma cacao HOM05D007450 ORTHO05D009377 4.7e-15 84.7 94 54.3
Aa31LG2G13720 Aethionema arabicum HOM05D007450 ORTHO05D009377 6.1e-15 84.3 100 62.0
A05p25040 Brassica napus HOM05D007450 ORTHO05D009377 8.0e-15 84.0 100 59.0
Carub.0001s3064 Capsella rubella HOM05D007450 ORTHO05D009377 8.0e-15 84.0 95 61.1
Eucgr.E00251 Eucalyptus grandis HOM05D007450 ORTHO05D009377 8.0e-15 84.0 111 45.9
CARHR031660 Cardamine hirsuta HOM05D007450 ORTHO05D009377 1.4e-14 83.2 100 58.0
ClCG09G011730 Citrullus lanatus HOM05D007450 ORTHO05D009377 1.4e-14 83.2 92 53.3
Haze_08178 Corylus avellana HOM05D007450 ORTHO05D009377 1.4e-14 83.2 172 37.2
Gorai.008G225000 Gossypium raimondii HOM05D007450 ORTHO05D009377 1.8e-14 82.8 89 67.4
Nitab4.5_0000353g0070 Nicotiana tabacum HOM05D007450 ORTHO05D009377 1.8e-14 82.8 100 49.0
BcaB03g13745 Brassica carinata HOM05D007450 ORTHO05D009377 2.3e-14 82.4 100 59.0
C05p38880 Brassica napus HOM05D007450 ORTHO05D009377 2.3e-14 82.4 97 58.8
BolC5t32629H Brassica oleracea HOM05D007450 ORTHO05D009377 2.3e-14 82.4 97 58.8
Rhsim07G0130700 Rhododendron simsii HOM05D007450 ORTHO05D009377 2.3e-14 82.4 110 43.6
Peaxi162Scf00879g00221 Petunia axillaris HOM05D007450 ORTHO05D009377 3.0e-14 82.0 109 45.9
Sed0003049 Sechium edule HOM05D007450 ORTHO05D009377 3.9e-14 81.6 105 48.6
Peaxi162Scf00170g01010 Petunia axillaris HOM05D007450 ORTHO05D009377 6.7e-14 80.9 108 45.4
Potri.003G095100 Populus trichocarpa HOM05D007450 ORTHO05D009377 6.7e-14 80.9 106 58.5
Actinidia09178 Actinidia chinensis HOM05D007450 ORTHO05D009377 8.8e-14 80.5 107 44.9
Actinidia14787 Actinidia chinensis HOM05D007450 ORTHO05D009377 8.8e-14 80.5 110 44.5
Lalb_Chr16g0381181 Lupinus albus HOM05D007450 ORTHO05D009377 1.5e-13 79.7 93 53.8
PSO063G4138 Papaver somniferum HOM05D007450 ORTHO05D009377 1.5e-13 79.7 115 42.6
Aqoxy3G02217 Aquilegia oxysepala HOM05D007450 ORTHO05D009377 2.0e-13 79.3 71 53.5
ECA233G1068 Erigeron canadensis HOM05D007450 ORTHO05D009377 2.6e-13 79.0 101 45.5
BraA05t21386Z Brassica rapa HOM05D007450 ORTHO05D009377 3.3e-13 78.6 94 58.5
Ciclev10018330m.g Citrus clementina HOM05D007450 ORTHO05D009377 3.3e-13 78.6 89 51.7
PSO782G2764 Papaver somniferum HOM05D007450 ORTHO05D009377 3.3e-13 78.6 115 41.7
Peaxi162Scf00170g00915 Petunia axillaris HOM05D007450 ORTHO05D009377 3.3e-13 78.6 109 44.0
Dinv28985 Davidia involucrata HOM05D007450 ORTHO05D009377 4.4e-13 78.2 90 50.0
Cc08_g03220 Coffea canephora HOM05D007450 ORTHO05D009377 9.7e-13 77.0 90 50.0
COL.COLO4_16968 Corchorus olitorius HOM05D007450 ORTHO05D009377 2.2e-12 75.9 52 69.2
Solyc08g076580.3 Solanum lycopersicum HOM05D007450 ORTHO05D009377 2.8e-12 75.5 100 47.0
CAN.G298.58 Capsicum annuum HOM05D007450 ORTHO05D009377 4.8e-12 74.7 100 46.0
Nitab4.5_0000685g0040 Nicotiana tabacum HOM05D007450 ORTHO05D009377 4.8e-12 74.7 89 48.3
DCAR_008242 Daucus carota HOM05D007450 ORTHO05D009377 1.8e-11 72.8 93 47.3
Lsat_1_v5_gn_6_1640 Lactuca sativa HOM05D007450 ORTHO05D009377 4.1e-11 71.6 101 41.6
PGSC0003DMG400014800 Solanum tuberosum HOM05D007450 ORTHO05D009377 4.1e-11 71.6 89 48.3
MSTRG.1994 Avicennia marina HOM05D007450 ORTHO05D009377 1.2e-10 70.1 66 54.5
HanXRQChr13g0395471 Helianthus annuus HOM05D007450 ORTHO05D009377 1.6e-10 69.7 100 43.0
Sopen08g025140 Solanum pennellii HOM05D007450 ORTHO05D009377 1.6e-10 69.7 89 48.3
vmacro14189 Vaccinium macrocarpon HOM05D007450 ORTHO05D009377 4.5e-10 68.2 90 47.8
ATR0829G039 Amborella trichopoda HOM05D007450 ORTHO05D009377 5.9e-10 67.8 52 65.4
Sc01g0007300 Simmondsia chinensis HOM05D007450 ORTHO05D009377 1.7e-09 66.2 134 41.0
SHI36446 Sapria himalayana HOM05D007450 ORTHO05D009377 1.1e-08 63.5 55 58.2
HPP92_001521 Vanilla planifolia HOM05D007450 ORTHO05D009377 1.1e-08 63.5 91 44.0
Os10g0575950 Oryza sativa ssp. japonica HOM05D007450 ORTHO05D009377 1.6e-07 59.7 97 41.2
CARHR033090 Cardamine hirsuta HOM05D007450 ORTHO05D009377 2.7e-07 58.9 46 58.7
CDE11G0326 Ceratophyllum demersum HOM05D007450 ORTHO05D009377 2.7e-07 58.9 63 52.4
Hund11210 Selenicereus undatus HOM05D007450 ORTHO05D009377 2.7e-07 58.9 90 43.3
Migut.E00781 Erythranthe guttata HOM05D007450 ORTHO05D009377 8.0e-07 57.4 60 50.0
EL10Ac5g12043 Beta vulgaris HOM05D007450 ORTHO05D009377 1.0e-06 57.0 67 49.3
SalBow1G6923 Salvia bowleyana HOM05D007450 ORTHO05D009377 2.3e-06 55.8 50 54.0
Zm00001eb024740 Zea mays HOM05D007450 ORTHO05D009377 2.3e-06 55.8 69 44.9
CsaV3_3G048930 Cucumis sativus L. HOM05D007450 ORTHO05D009377 4.0e-06 55.1 38 63.2


User provided reference genes

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