Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G136600 Phaseolus vulgaris HOM05D004519 ORTHO05D006283 4.2e-246 854.4 462 100.0
VMungo1215G0394 Vigna mungo HOM05D004519 ORTHO05D006283 6.9e-225 783.9 468 87.8
Glyma.01G014200 Glycine max HOM05D004519 ORTHO05D006283 2.5e-203 712.2 469 78.9
Glyma.09G207900 Glycine max HOM05D004519 ORTHO05D006283 8.2e-202 707.2 472 83.5
Lj4g0001331 Lotus japonicus HOM05D004519 ORTHO05D006283 6.5e-183 644.4 467 70.9
Psat2g139000 Pisum sativum HOM05D004519 ORTHO05D006283 6.5e-183 644.4 413 77.7
Lalb_Chr09g0325481 Lupinus albus HOM05D004519 ORTHO05D006283 6.1e-181 637.9 462 70.8
TPR.G19434 Trifolium pratense HOM05D004519 ORTHO05D006283 1.8e-180 636.3 402 77.9
Lalb_Chr16g0381061 Lupinus albus HOM05D004519 ORTHO05D006283 1.4e-177 626.7 372 80.4
Medtr5g029230 Medicago truncatula HOM05D004519 ORTHO05D006283 9.1e-177 624.0 395 77.2
Ca_25177_v3 Cicer arietinum L. HOM05D004519 ORTHO05D006283 2.2e-175 619.4 363 82.1
CiPaw.12G068400 Carya illinoinensis HOM05D004519 ORTHO05D006283 4.4e-163 578.6 365 74.8
Cfa012505 Carpinus fangiana HOM05D004519 ORTHO05D006283 1.7e-162 576.6 366 74.0
RcHm_v2.0_Chr7g0211781 Rosa chinensis HOM05D004519 ORTHO05D006283 5.9e-160 568.2 366 71.9
FvH4_5g23060 Fragaria vesca HOM05D004519 ORTHO05D006283 5.0e-159 565.1 364 72.3
FAN18G3814 Fragaria x ananassa HOM05D004519 ORTHO05D006283 5.0e-159 565.1 364 72.3
FAN13G3061 Fragaria x ananassa HOM05D004519 ORTHO05D006283 3.3e-158 562.4 364 72.0
CiPaw.11G098500 Carya illinoinensis HOM05D004519 ORTHO05D006283 4.3e-158 562.0 364 72.8
FAN04G1490 Fragaria x ananassa HOM05D004519 ORTHO05D006283 4.3e-158 562.0 364 71.7
GSVIVG01013060001 Vitis vinifera HOM05D004519 ORTHO05D006283 2.1e-157 559.7 366 71.3
FAN18G1908 Fragaria x ananassa HOM05D004519 ORTHO05D006283 1.4e-156 557.0 380 69.5
Manes.17G018849 Manihot esculenta HOM05D004519 ORTHO05D006283 3.1e-156 555.8 381 68.8
Ciclev10001047m.g Citrus clementina HOM05D004519 ORTHO05D006283 4.0e-156 555.4 412 65.3
MD06G1026700 Malus domestica HOM05D004519 ORTHO05D006283 4.0e-156 555.4 366 70.5
PGR042G1943 Punica granatum HOM05D004519 ORTHO05D006283 5.2e-156 555.1 366 69.4
Potri.001G136600 Populus trichocarpa HOM05D004519 ORTHO05D006283 6.8e-156 554.7 381 69.8
Gohir.A11G028600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 1.2e-155 553.9 366 73.5
CANSAT01G0127 Cannabis sativa HOM05D004519 ORTHO05D006283 1.5e-155 553.5 367 71.7
Gorai.007G033500 Gossypium raimondii HOM05D004519 ORTHO05D006283 2.6e-155 552.7 366 73.5
Dinv25262 Davidia involucrata HOM05D004519 ORTHO05D006283 3.4e-155 552.4 381 68.5
Gohir.D11G030600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 5.8e-155 551.6 366 73.5
TAR629G2035 Trochodendron aralioides HOM05D004519 ORTHO05D006283 7.5e-155 551.2 355 71.0
MD16G1279400 Malus domestica HOM05D004519 ORTHO05D006283 6.4e-154 548.1 414 63.8
THA.LOC104812759 Tarenaya hassleriana HOM05D004519 ORTHO05D006283 1.1e-153 547.4 364 71.4
Gorai.004G182200 Gossypium raimondii HOM05D004519 ORTHO05D006283 1.4e-153 547.0 366 72.1
arahy.Tifrunner.gnm1.ann1.BI8WMI Arachis hypogaea HOM05D004519 ORTHO05D006283 1.9e-153 546.6 354 73.7
arahy.Tifrunner.gnm1.ann1.D9NVDI Arachis hypogaea HOM05D004519 ORTHO05D006283 1.9e-153 546.6 354 73.7
Oeu027094.2 Olea europaea HOM05D004519 ORTHO05D006283 1.9e-153 546.6 367 69.5
Nn1g00218 Nelumbo nucifera HOM05D004519 ORTHO05D006283 5.4e-153 545.0 366 68.9
PSO063G4347 Papaver somniferum HOM05D004519 ORTHO05D006283 5.4e-153 545.0 366 68.0
MELO3C003440.2 Cucumis melo HOM05D004519 ORTHO05D006283 9.2e-153 544.3 376 68.9
CSS0024637 Camellia sinensis var. sinensis HOM05D004519 ORTHO05D006283 2.0e-152 543.1 417 64.7
PSO782G3212 Papaver somniferum HOM05D004519 ORTHO05D006283 2.0e-152 543.1 366 67.8
Dinv29004 Davidia involucrata HOM05D004519 ORTHO05D006283 6.0e-152 541.6 417 64.5
CsaV3_3G048840 Cucumis sativus L. HOM05D004519 ORTHO05D006283 1.0e-151 540.8 396 66.2
Migut.E00743 Erythranthe guttata HOM05D004519 ORTHO05D006283 6.6e-151 538.1 380 67.1
Eucgr.E00228 Eucalyptus grandis HOM05D004519 ORTHO05D006283 6.6e-151 538.1 364 69.0
Carub.0001s3053 Capsella rubella HOM05D004519 ORTHO05D006283 8.6e-151 537.7 366 68.0
AL1G46330 Arabidopsis lyrata HOM05D004519 ORTHO05D006283 1.1e-150 537.3 366 68.3
Sed0022223 Sechium edule HOM05D004519 ORTHO05D006283 1.1e-150 537.3 403 65.0
Aa31LG2G13810 Aethionema arabicum HOM05D004519 ORTHO05D006283 2.5e-150 536.2 400 65.5
THA.LOC104814413 Tarenaya hassleriana HOM05D004519 ORTHO05D006283 3.3e-150 535.8 365 70.4
Aqoxy3G02176 Aquilegia oxysepala HOM05D004519 ORTHO05D006283 4.3e-150 535.4 366 68.0
Nitab4.5_0000529g0120 Nicotiana tabacum HOM05D004519 ORTHO05D006283 4.3e-150 535.4 363 69.7
Sp1g27880 Schrenkiella parvula HOM05D004519 ORTHO05D006283 5.6e-150 535.0 406 64.0
A05p25130 Brassica napus HOM05D004519 ORTHO05D006283 7.3e-150 534.6 389 65.6
BraA05t21393Z Brassica rapa HOM05D004519 ORTHO05D006283 7.3e-150 534.6 389 65.6
Sc01g0007150 Simmondsia chinensis HOM05D004519 ORTHO05D006283 9.5e-150 534.3 392 65.3
AT1G32200 Arabidopsis thaliana HOM05D004519 ORTHO05D006283 1.2e-149 533.9 380 66.6
Hma1.2p1_1569F.1_g291200 Hydrangea macrophylla HOM05D004519 ORTHO05D006283 1.2e-149 533.9 384 66.4
BcaB03g13753 Brassica carinata HOM05D004519 ORTHO05D006283 1.6e-149 533.5 366 68.6
CAN.G726.25 Capsicum annuum HOM05D004519 ORTHO05D006283 4.7e-149 531.9 402 65.2
C05p31600 Brassica napus HOM05D004519 ORTHO05D006283 6.2e-149 531.6 391 65.2
BolC5t31883H Brassica oleracea HOM05D004519 ORTHO05D006283 6.2e-149 531.6 391 65.2
MSTRG.24848 Avicennia marina HOM05D004519 ORTHO05D006283 1.1e-148 530.8 363 67.2
BcaC05g27251 Brassica carinata HOM05D004519 ORTHO05D006283 1.4e-148 530.4 391 65.2
Nn3g19385 Nelumbo nucifera HOM05D004519 ORTHO05D006283 1.4e-148 530.4 366 65.8
Thhalv10007540m.g Eutrema salsugineum HOM05D004519 ORTHO05D006283 1.8e-148 530.0 406 62.8
Solyc08g076470.4 Solanum lycopersicum HOM05D004519 ORTHO05D006283 5.2e-148 528.5 381 66.7
BcaC05g27905 Brassica carinata HOM05D004519 ORTHO05D006283 8.9e-148 527.7 412 62.9
A09p34000 Brassica napus HOM05D004519 ORTHO05D006283 1.2e-147 527.3 406 62.8
Sopen08g025050 Solanum pennellii HOM05D004519 ORTHO05D006283 1.5e-147 526.9 381 66.4
Cc08_g03490 Coffea canephora HOM05D004519 ORTHO05D006283 2.0e-147 526.6 371 68.2
HanXRQChr03g0083251 Helianthus annuus HOM05D004519 ORTHO05D006283 2.6e-147 526.2 378 66.4
BcaB04g17996 Brassica carinata HOM05D004519 ORTHO05D006283 7.5e-147 524.6 388 64.4
CARHR031570 Cardamine hirsuta HOM05D004519 ORTHO05D006283 7.5e-147 524.6 400 64.5
SGA_v2.0_scaffold198G41070 Striga asiatica HOM05D004519 ORTHO05D006283 7.5e-147 524.6 395 64.1
Duzib205G0301 Durio zibethinus HOM05D004519 ORTHO05D006283 2.9e-146 522.7 360 69.2
A08p09320 Brassica napus HOM05D004519 ORTHO05D006283 4.9e-146 521.9 364 67.6
BraA08t32930Z Brassica rapa HOM05D004519 ORTHO05D006283 4.9e-146 521.9 364 67.6
BcaC07g37628 Brassica carinata HOM05D004519 ORTHO05D006283 6.4e-146 521.5 388 64.7
BolC8t47999H Brassica oleracea HOM05D004519 ORTHO05D006283 8.3e-146 521.2 388 64.7
Gohir.A03G000032 Gossypium hirsutum HOM05D004519 ORTHO05D006283 8.3e-146 521.2 366 68.3
Sabra01G0105700 Salix brachista HOM05D004519 ORTHO05D006283 1.1e-145 520.8 429 61.1
BcaB07g32892 Brassica carinata HOM05D004519 ORTHO05D006283 1.9e-145 520.0 401 62.6
HanXRQChr13g0414231 Helianthus annuus HOM05D004519 ORTHO05D006283 1.6e-144 516.9 391 64.5
Gorai.003G185500 Gossypium raimondii HOM05D004519 ORTHO05D006283 3.5e-144 515.8 366 67.5
ClCG09G011630 Citrullus lanatus HOM05D004519 ORTHO05D006283 4.6e-144 515.4 397 64.0
Lsat_1_v5_gn_6_80100 Lactuca sativa HOM05D004519 ORTHO05D006283 1.0e-143 514.2 382 63.6
MBI04_g32203_MAGBIO Magnolia biondii HOM05D004519 ORTHO05D006283 1.0e-143 514.2 394 61.9
Os10g0577900 Oryza sativa ssp. japonica HOM05D004519 ORTHO05D006283 1.3e-143 513.8 371 65.0
QL12p001672 Quercus lobata HOM05D004519 ORTHO05D006283 1.3e-143 513.8 490 54.5
ECA240G3299 Erigeron canadensis HOM05D004519 ORTHO05D006283 2.3e-143 513.1 394 62.4
ATR0829G164 Amborella trichopoda HOM05D004519 ORTHO05D006283 5.6e-142 508.4 371 65.5
CSS0001538 Camellia sinensis var. sinensis HOM05D004519 ORTHO05D006283 2.6e-139 499.6 333 70.0
Zm00001eb224960 Zea mays HOM05D004519 ORTHO05D006283 2.6e-139 499.6 357 64.1
Prupe.5G027200 Prunus persica HOM05D004519 ORTHO05D006283 1.7e-138 496.9 366 64.8
Zm00001eb025080 Zea mays HOM05D004519 ORTHO05D006283 8.4e-138 494.6 362 63.5
SEGI_02196 Sequoiadendron giganteum HOM05D004519 ORTHO05D006283 1.2e-136 490.7 385 62.3
Rhsim11G0021900 Rhododendron simsii HOM05D004519 ORTHO05D006283 1.3e-135 487.3 515 50.7
AUR62007353 Chenopodium quinoa HOM05D004519 ORTHO05D006283 3.9e-135 485.7 423 57.9
BraA09t38946Z Brassica rapa HOM05D004519 ORTHO05D006283 1.6e-133 480.3 406 59.4
AUR62018641 Chenopodium quinoa HOM05D004519 ORTHO05D006283 2.1e-133 479.9 352 64.8
Gohir.D03G176300 Gossypium hirsutum HOM05D004519 ORTHO05D006283 3.6e-133 479.2 333 68.2
vmacro00276 Vaccinium macrocarpon HOM05D004519 ORTHO05D006283 4.7e-133 478.8 329 68.4
CDE12G0245 Ceratophyllum demersum HOM05D004519 ORTHO05D006283 1.4e-132 477.2 368 62.2
C05p39140 Brassica napus HOM05D004519 ORTHO05D006283 1.8e-132 476.9 374 62.3
DCAR_008221 Daucus carota HOM05D004519 ORTHO05D006283 5.2e-132 475.3 373 61.4
Thecc.03G310400 Theobroma cacao HOM05D004519 ORTHO05D006283 1.7e-130 470.3 389 61.4
Duzib068G1409 Durio zibethinus HOM05D004519 ORTHO05D006283 2.2e-130 469.9 389 62.2
unitig_32.g10899 Utricularia gibba HOM05D004519 ORTHO05D006283 2.5e-126 456.4 319 65.2
Lj2A231G41 Lonicera japonica HOM05D004519 ORTHO05D006283 3.3e-126 456.1 443 55.8
Haze_08164 Corylus avellana HOM05D004519 ORTHO05D006283 4.3e-126 455.7 339 65.8
CDE04G2515 Ceratophyllum demersum HOM05D004519 ORTHO05D006283 2.0e-123 446.8 372 58.9
Nitab4.5_0012493g0010 Nicotiana tabacum HOM05D004519 ORTHO05D006283 7.6e-123 444.9 293 71.3
Mapoly0045s0098 Marchantia polymorpha HOM05D004519 ORTHO05D006283 3.8e-122 442.6 380 54.2
Gohir.D08G174500 Gossypium hirsutum HOM05D004519 ORTHO05D006283 8.4e-122 441.4 298 70.1
Peaxi162Scf00170g00818 Petunia axillaris HOM05D004519 ORTHO05D006283 5.4e-121 438.7 410 56.6
Gohir.A08G153600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 9.3e-121 438.0 298 69.8
FAN08G3243 Fragaria x ananassa HOM05D004519 ORTHO05D006283 5.1e-119 432.2 325 63.7
EL10Ac5g12013 Beta vulgaris HOM05D004519 ORTHO05D006283 3.3e-118 429.5 382 54.7
Pp3c7_2970 Physcomitrium patens HOM05D004519 ORTHO05D006283 5.8e-115 418.7 364 52.5
HPP92_020895 Vanilla planifolia HOM05D004519 ORTHO05D006283 1.9e-113 413.7 293 64.5
SMO244G0022 Selaginella moellendorffii HOM05D004519 ORTHO05D006283 1.6e-112 410.6 353 54.7
AagrBONN_evm.TU.Sc2ySwM_117.1032 Anthoceros agrestis HOM05D004547 ORTHO05D005133 1.1e-110 404.4 383 52.7
HanXRQChr06g0172791 Helianthus annuus HOM05D004519 ORTHO05D006283 2.5e-110 403.3 354 57.3
EL10Ac5g12011 Beta vulgaris HOM05D004519 ORTHO05D006283 6.5e-106 388.7 382 51.3
CBR_g4494 Chara braunii HOM05D004519 ORTHO05D006283 1.6e-104 384.0 375 50.1
DCAR_004271 Daucus carota HOM05D004519 ORTHO05D006283 8.7e-103 378.3 248 69.0
Actinidia01317 Actinidia chinensis HOM05D004519 ORTHO05D006283 4.1e-100 369.4 258 67.8
Haze_08160 Corylus avellana HOM05D004519 ORTHO05D006283 1.0e-98 364.8 255 69.8
Eucgr.E01634 Eucalyptus grandis HOM05D004519 ORTHO05D006283 1.0e-95 354.8 248 67.3
Cpa.g.sc208.3 Carica papaya HOM05D004519 ORTHO05D006283 3.0e-95 353.2 217 74.7
Atru.chr6.1525 Acer truncatum HOM05D004519 ORTHO05D006283 6.3e-85 318.9 206 72.8
Cre02.g143000 Chlamydomonas reinhardtii HOM05D004519 ORTHO05D006283 3.8e-74 283.1 382 40.3
Actinidia29340 Actinidia chinensis HOM05D004519 ORTHO05D006283 1.8e-63 247.7 176 66.5
MCO03G317 Micromonas commoda HOM05D004519 ORTHO05D006283 1.3e-58 231.5 332 39.2
PRCOL_00006772 Prasinoderma coloniale HOM05D004519 ORTHO05D006283 6.5e-58 229.2 322 38.5
Hma1.2p1_3246F.1_g334370 Hydrangea macrophylla HOM05D004519 ORTHO05D006283 7.8e-43 179.1 185 50.8
Cpa.g.sc208.5 Carica papaya HOM05D004519 ORTHO05D006283 2.2e-37 161.0 106 68.9
MBI15_g25773_MAGBIO Magnolia biondii HOM05D004519 ORTHO05D006283 1.4e-31 141.7 98 65.3
Eucgr.A01818 Eucalyptus grandis HOM05D004519 ORTHO05D006283 3.7e-29 133.7 84 71.4
Haze_20066 Corylus avellana HOM05D004519 ORTHO05D007437 3.2e-20 104.0 95 53.7
HanXRQChr16g0500211 Helianthus annuus HOM05D004519 ORTHO05D006283 2.1e-19 101.3 77 63.6
arahy.Tifrunner.gnm1.ann1.LG4SFI Arachis hypogaea HOM05D000755 ORTHO05D017477 4.6e-19 100.1 108 49.1
PGSC0003DMG401014796 Solanum tuberosum HOM05D004519 ORTHO05D006283 2.3e-18 97.8 93 51.6
Actinidia01316 Actinidia chinensis HOM05D004519 ORTHO05D006283 3.6e-16 90.5 62 66.1
Gohir.D08G117301 Gossypium hirsutum HOM05D004519 ORTHO05D017048 6.9e-15 86.3 55 70.9
Gohir.D11G228750 Gossypium hirsutum HOM05D004519 ORTHO05D017048 6.9e-15 86.3 55 70.9
Gohir.D11G251850 Gossypium hirsutum HOM05D004519 ORTHO05D017048 6.9e-15 86.3 55 70.9
Gohir.D13G135501 Gossypium hirsutum HOM05D004519 ORTHO05D017048 2.0e-14 84.7 55 69.1
Gorai.008G116000 Gossypium raimondii HOM05D004519 ORTHO05D017048 9.9e-14 82.4 54 68.5
RcHm_v2.0_Chr5g0062811 Rosa chinensis HOM05D004519 ORTHO05D017048 1.3e-13 82.0 54 66.7
COL.COLO4_16939 Corchorus olitorius HOM05D004519 ORTHO05D006283 4.8e-08 63.5 68 50.0
arahy.Tifrunner.gnm1.ann1.18EICQ Arachis hypogaea HOM05D000755 ORTHO05D017477 6.9e-07 59.7 53 60.4
Actinidia29341 Actinidia chinensis HOM05D004519 ORTHO05D052920 5.8e-06 56.6 32 71.9


User provided reference genes

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