Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G134300 Phaseolus vulgaris HOM05D006675 ORTHO05D008302 9.3e-101 370.2 180 100.0
VMungo1215G1847 Vigna mungo HOM05D006675 ORTHO05D008302 3.0e-99 365.2 180 97.8
Medtr5g028000 Medicago truncatula HOM05D006675 ORTHO05D008302 1.4e-96 356.3 180 96.1
Glyma.09G209600 Glycine max HOM05D006675 ORTHO05D008302 2.4e-96 355.5 180 95.6
Lj2g0021996 Lotus japonicus HOM05D006675 ORTHO05D008302 4.5e-95 351.3 180 93.9
Glyma.01G011400 Glycine max HOM05D006675 ORTHO05D008302 6.4e-94 347.4 180 92.8
Lalb_Chr16g0380971 Lupinus albus HOM05D006675 ORTHO05D008302 6.4e-94 347.4 180 92.2
CiPaw.12G069400 Carya illinoinensis HOM05D006675 ORTHO05D008302 8.1e-89 330.5 180 84.4
COL.COLO4_16920 Corchorus olitorius HOM05D006675 ORTHO05D008302 2.4e-88 328.9 180 85.6
Duzib205G0370 Durio zibethinus HOM05D006675 ORTHO05D008302 2.4e-88 328.9 180 84.4
Potri.001G135700 Populus trichocarpa HOM05D006675 ORTHO05D008302 6.9e-88 327.4 180 84.4
MELO3C013816.2 Cucumis melo HOM05D006675 ORTHO05D008302 9.0e-88 327.0 180 84.4
Sed0011153 Sechium edule HOM05D006675 ORTHO05D008302 9.0e-88 327.0 180 85.0
CsaV3_3G001280 Cucumis sativus L. HOM05D006675 ORTHO05D008302 1.5e-87 326.2 180 83.9
Manes.01G194600 Manihot esculenta HOM05D006675 ORTHO05D008302 2.6e-87 325.5 180 85.0
Gohir.D03G176700 Gossypium hirsutum HOM05D006675 ORTHO05D008302 5.8e-87 324.3 180 83.3
QL12p001835 Quercus lobata HOM05D006675 ORTHO05D008302 5.8e-87 324.3 179 83.2
Thecc.03G311400 Theobroma cacao HOM05D006675 ORTHO05D008302 9.9e-87 323.6 180 82.8
Cc08_g03740 Coffea canephora HOM05D006675 ORTHO05D008302 4.9e-86 321.2 180 80.6
Cfa009033 Carpinus fangiana HOM05D006675 ORTHO05D008302 1.1e-85 320.1 180 81.7
Duzib068G1343 Durio zibethinus HOM05D006675 ORTHO05D008302 1.1e-85 320.1 180 82.8
Solyc08g076130.3 Solanum lycopersicum HOM05D006675 ORTHO05D008302 1.1e-85 320.1 180 81.7
Sopen08g024770 Solanum pennellii HOM05D006675 ORTHO05D008302 1.1e-85 320.1 180 81.7
Gohir.A03G000027 Gossypium hirsutum HOM05D006675 ORTHO05D008302 1.4e-85 319.7 180 83.3
PGSC0003DMG400003501 Solanum tuberosum HOM05D006675 ORTHO05D008302 1.9e-85 319.3 180 81.1
CSS0012354 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 2.4e-85 318.9 180 82.2
CSS0042811 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 2.4e-85 318.9 180 82.2
Haze_12062 Corylus avellana HOM05D006675 ORTHO05D008302 2.4e-85 318.9 180 81.7
PGR042G1238 Punica granatum HOM05D006675 ORTHO05D008302 3.2e-85 318.5 180 83.3
CAN.G773.29 Capsicum annuum HOM05D006675 ORTHO05D008302 4.2e-85 318.2 180 81.1
GSVIVG01013027001 Vitis vinifera HOM05D006675 ORTHO05D008302 4.2e-85 318.2 180 80.6
Ciclev10002637m.g Citrus clementina HOM05D006675 ORTHO05D008302 5.5e-85 317.8 180 83.3
PGSC0003DMG400009297 Solanum tuberosum HOM05D006675 ORTHO05D008302 5.5e-85 317.8 180 81.1
CANSAT21G2314 Cannabis sativa HOM05D006675 ORTHO05D008302 7.1e-85 317.4 180 82.2
Sc10g0009260 Simmondsia chinensis HOM05D006675 ORTHO05D008302 7.1e-85 317.4 180 81.1
Aqoxy5G00552 Aquilegia oxysepala HOM05D006675 ORTHO05D008302 1.2e-84 316.6 180 82.2
RcHm_v2.0_Chr7g0212211 Rosa chinensis HOM05D006675 ORTHO05D008302 1.2e-84 316.6 180 81.7
DCAR_024956 Daucus carota HOM05D006675 ORTHO05D008302 1.6e-84 316.2 180 81.7
Sp7g17730 Schrenkiella parvula HOM05D006675 ORTHO05D008302 1.6e-84 316.2 180 81.7
AT4G19003 Arabidopsis thaliana HOM05D006675 ORTHO05D008302 3.5e-84 315.1 180 81.7
TWI60G1033 Tripterygium wilfordii HOM05D006675 ORTHO05D008302 3.5e-84 315.1 180 80.6
Atru.chr3.2397 Acer truncatum HOM05D006675 ORTHO05D008302 6.0e-84 314.3 180 80.6
THA.LOC104798450 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 6.0e-84 314.3 180 80.0
BcaNung04023 Brassica carinata HOM05D006675 ORTHO05D008302 1.0e-83 313.5 180 80.6
BraA01t01049Z Brassica rapa HOM05D006675 ORTHO05D008302 1.0e-83 313.5 180 80.6
Carub.0007s2216 Capsella rubella HOM05D006675 ORTHO05D008302 1.0e-83 313.5 180 80.6
Thhalv10026368m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 1.0e-83 313.5 180 80.6
AL7G35150 Arabidopsis lyrata HOM05D006675 ORTHO05D008302 1.3e-83 313.2 180 81.1
BcaC09g51446 Brassica carinata HOM05D000169 ORTHO05D008302 2.3e-83 312.4 180 80.0
BolC1t01279H Brassica oleracea HOM05D000169 ORTHO05D000542 2.3e-83 312.4 180 80.0
FvH4_5g23270 Fragaria vesca HOM05D006675 ORTHO05D008302 2.3e-83 312.4 180 80.6
FAN18G2874 Fragaria x ananassa HOM05D006675 ORTHO05D008302 2.3e-83 312.4 180 80.6
Migut.E01322 Erythranthe guttata HOM05D006675 ORTHO05D008302 3.0e-83 312.0 180 80.0
ATR0796G253 Amborella trichopoda HOM05D006675 ORTHO05D008302 3.9e-83 311.6 180 80.0
C01p13040 Brassica napus HOM05D000169 ORTHO05D000542 3.9e-83 311.6 180 80.0
PSO170G4469 Papaver somniferum HOM05D006675 ORTHO05D008302 3.9e-83 311.6 180 80.0
MSTRG.1795 Avicennia marina HOM05D006675 ORTHO05D008302 5.1e-83 311.2 180 78.3
FAN18G0120 Fragaria x ananassa HOM05D006675 ORTHO05D008302 6.7e-83 310.8 180 80.0
Prupe.4G182100 Prunus persica HOM05D006675 ORTHO05D008302 6.7e-83 310.8 181 80.1
THA.LOC104806177 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 6.7e-83 310.8 180 79.4
CARHR225840 Cardamine hirsuta HOM05D006675 ORTHO05D008302 2.5e-82 308.9 180 78.9
Lj8A133G65 Lonicera japonica HOM05D006675 ORTHO05D008302 7.4e-82 307.4 199 73.9
Nn1g09734 Nelumbo nucifera HOM05D006675 ORTHO05D008302 7.4e-82 307.4 180 79.4
HanXRQChr12g0362191 Helianthus annuus HOM05D006675 ORTHO05D008302 1.6e-81 306.2 180 78.9
SalBow8G0964 Salvia bowleyana HOM05D006675 ORTHO05D008302 1.6e-81 306.2 180 76.7
MD11G1243800 Malus domestica HOM05D006675 ORTHO05D008302 3.7e-81 305.1 181 78.5
Aa31LG6G1700 Aethionema arabicum HOM05D006675 ORTHO05D008302 6.2e-81 304.3 181 79.0
HPP92_023365 Vanilla planifolia HOM05D006675 ORTHO05D008302 1.1e-80 303.5 180 78.3
Ca_25161_v3 Cicer arietinum L. HOM05D006675 ORTHO05D000003 1.8e-80 302.8 160 90.6
PSO017G0801 Papaver somniferum HOM05D006675 ORTHO05D008302 1.8e-80 302.8 180 78.9
Rhsim06G0208000 Rhododendron simsii HOM05D006675 ORTHO05D008302 5.3e-80 301.2 206 71.8
Actinidia01330 Actinidia chinensis HOM05D006675 ORTHO05D008302 4.5e-79 298.1 165 82.4
ECA233G1922 Erigeron canadensis HOM05D006675 ORTHO05D008302 1.7e-78 296.2 180 75.0
HanXRQChr14g0430781 Helianthus annuus HOM05D006675 ORTHO05D008302 1.1e-77 293.5 187 73.3
BcaNung06620 Brassica carinata HOM05D006675 ORTHO05D008302 1.4e-77 293.1 203 69.5
Eucgr.E01319 Eucalyptus grandis HOM05D006675 ORTHO05D008302 2.5e-74 282.3 174 76.4
Zm00001eb157890 Zea mays HOM05D006675 ORTHO05D008302 3.3e-74 282.0 180 73.3
SEGI_13659 Sequoiadendron giganteum HOM05D006675 ORTHO05D008302 4.3e-74 281.6 177 72.3
Eucgr.E01313 Eucalyptus grandis HOM05D006675 ORTHO05D008302 2.1e-73 279.3 175 74.9
Oeu017091.1 Olea europaea HOM05D006675 ORTHO05D008302 3.7e-73 278.5 160 81.2
Dinv06918 Davidia involucrata HOM05D006675 ORTHO05D008302 4.8e-73 278.1 159 81.8
Peaxi162Scf00052g00336 Petunia axillaris HOM05D006675 ORTHO05D008302 4.8e-73 278.1 159 79.9
CDE02G0997 Ceratophyllum demersum HOM05D006675 ORTHO05D008302 1.8e-72 276.2 180 73.3
SGA_v2.0_scaffold8G04421 Striga asiatica HOM05D006675 ORTHO05D008302 5.3e-72 274.6 161 78.3
TPR.G19460 Trifolium pratense HOM05D006675 ORTHO05D008302 1.2e-71 273.5 139 94.2
Mapoly0004s0185 Marchantia polymorpha HOM05D006675 ORTHO05D008302 2.0e-71 272.7 177 67.8
AUR62007364 Chenopodium quinoa HOM05D006675 ORTHO05D008302 5.9e-71 271.2 160 77.5
Nitab4.5_0002897g0050 Nicotiana tabacum HOM05D006675 ORTHO05D008302 1.0e-70 270.4 180 71.7
ClCG06G010630 Citrullus lanatus HOM05D006675 ORTHO05D008302 2.5e-69 265.8 172 75.6
Lsat_1_v5_gn_9_15400 Lactuca sativa HOM05D006675 ORTHO05D008302 2.5e-69 265.8 156 78.2
EL10Ac5g11997 Beta vulgaris HOM05D006675 ORTHO05D008302 7.2e-69 264.2 164 75.0
Thhalv10015765m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 9.3e-69 263.8 167 74.9
unitig_61.g26418 Utricularia gibba HOM05D006675 ORTHO05D008302 2.3e-67 259.2 162 72.8
Sabra01G0105000 Salix brachista HOM05D006675 ORTHO05D008302 6.7e-67 257.7 218 61.9
SMO364G0912 Selaginella moellendorffii HOM05D006675 ORTHO05D008302 1.1e-66 256.9 175 65.1
Pp3c15_1420 Physcomitrium patens HOM05D006675 ORTHO05D008302 1.3e-65 253.4 175 66.3
Dinv29017 Davidia involucrata HOM05D006675 ORTHO05D008302 2.2e-65 252.7 153 77.1
Gorai.003G186000 Gossypium raimondii HOM05D006675 ORTHO05D008302 3.7e-65 251.9 139 81.3
CBR_g10842 Chara braunii HOM05D006675 ORTHO05D008302 1.4e-61 240.0 171 64.3
Nitab4.5_0002188g0010 Nicotiana tabacum HOM05D006675 ORTHO05D008302 2.6e-58 229.2 181 64.1
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 7.4e-58 227.6 123 86.2
arahy.Tifrunner.gnm1.ann1.XR7VEH Arachis hypogaea HOM05D006675 ORTHO05D008302 9.4e-53 210.7 117 82.1
Cre02.g076400 Chlamydomonas reinhardtii HOM05D006675 ORTHO05D008302 5.2e-51 204.9 174 51.7
SGA_v2.0_scaffold8G04249 Striga asiatica HOM05D006675 ORTHO05D008302 1.3e-49 200.3 147 64.6
arahy.Tifrunner.gnm1.ann1.1JB7Z5 Arachis hypogaea HOM05D000001 ORTHO05D000003 1.7e-49 199.9 185 60.5
arahy.Tifrunner.gnm1.ann1.K4EES2 Arachis hypogaea HOM05D000001 ORTHO05D000003 1.7e-49 199.9 185 60.5
AagrBONN_evm.TU.Sc2ySwM_228.5837 Anthoceros agrestis HOM05D006675 ORTHO05D008302 5.5e-45 184.9 146 60.3
Psat2g139880 Pisum sativum HOM05D006675 ORTHO05D008302 1.5e-42 176.8 91 93.4
Os01g0658500 Oryza sativa ssp. japonica HOM05D006675 ORTHO05D008302 1.1e-37 160.6 93 76.3
vmacro00263 Vaccinium macrocarpon HOM05D006675 ORTHO05D008302 1.1e-37 160.6 95 78.9
Ah.12g055570 Amaranthus hybridus HOM05D000160 ORTHO05D008302 2.5e-37 159.5 126 65.1
arahy.Tifrunner.gnm1.ann1.DBHH8D Arachis hypogaea HOM05D006675 ORTHO05D008302 2.5e-37 159.5 116 68.1
MCO12G007 Micromonas commoda HOM05D006675 ORTHO05D008302 1.6e-36 156.8 174 43.7
PRCOL_00001914 Prasinoderma coloniale HOM05D006675 ORTHO05D008302 1.4e-35 153.7 174 43.7
Hma1.2p1_0803F.1_g220920 Hydrangea macrophylla HOM05D006675 ORTHO05D008302 4.5e-31 138.7 177 44.1
GSVIVG01009131001 Vitis vinifera HOM05D006675 ORTHO05D008302 1.0e-27 127.5 82 70.7
BcaB07g30589 Brassica carinata HOM05D006675 ORTHO05D008302 5.9e-23 111.7 99 59.6
CARHR288450 Cardamine hirsuta HOM05D006675 ORTHO05D008302 3.8e-22 109.0 71 64.8
Actinidia29284 Actinidia chinensis HOM05D006675 ORTHO05D008302 8.6e-22 107.8 65 73.8
BcaB06g29627 Brassica carinata HOM05D006675 ORTHO05D008302 1.4e-19 100.5 100 57.0
Hund14383 Selenicereus undatus HOM05D006675 ORTHO05D008302 2.9e-17 92.8 56 76.8
A01p11020 Brassica napus HOM05D006675 ORTHO05D008302 3.7e-17 92.4 56 82.1
Haze_08131 Corylus avellana HOM05D006675 ORTHO05D008302 2.0e-15 86.7 50 80.0
FAN13G1728 Fragaria x ananassa HOM05D006675 ORTHO05D008302 5.0e-14 82.0 46 82.6
Phvul.002G134150 Phaseolus vulgaris HOM05D006675 ORTHO05D008302 7.0e-08 61.6 57 57.9
Gohir.D12G043050 Gossypium hirsutum HOM05D006675 ORTHO05D008302 1.2e-07 60.8 37 78.4


User provided reference genes

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