Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G134150 Phaseolus vulgaris HOM05D006675 ORTHO05D008302 2.9e-44 181.4 87 100.0
Glyma.09G209600 Glycine max HOM05D006675 ORTHO05D008302 5.3e-09 64.3 57 59.6
Duzib068G1343 Durio zibethinus HOM05D006675 ORTHO05D008302 6.9e-09 63.9 57 56.1
Glyma.01G011400 Glycine max HOM05D006675 ORTHO05D008302 6.9e-09 63.9 57 59.6
Dinv06918 Davidia involucrata HOM05D006675 ORTHO05D008302 9.0e-09 63.5 57 56.1
Ca_25161_v3 Cicer arietinum L. HOM05D006675 ORTHO05D000003 1.2e-08 63.2 33 87.9
Lalb_Chr16g0380971 Lupinus albus HOM05D006675 ORTHO05D008302 1.5e-08 62.8 57 56.1
Phvul.002G134300 Phaseolus vulgaris HOM05D006675 ORTHO05D008302 1.5e-08 62.8 57 57.9
Solyc08g076130.3 Solanum lycopersicum HOM05D006675 ORTHO05D008302 1.5e-08 62.8 57 56.1
Sopen08g024770 Solanum pennellii HOM05D006675 ORTHO05D008302 1.5e-08 62.8 57 56.1
PGSC0003DMG400009297 Solanum tuberosum HOM05D006675 ORTHO05D008302 1.5e-08 62.8 57 56.1
VMungo1215G1847 Vigna mungo HOM05D006675 ORTHO05D008302 1.5e-08 62.8 57 57.9
Rhsim06G0208000 Rhododendron simsii HOM05D006675 ORTHO05D008302 2.0e-08 62.4 51 62.7
arahy.Tifrunner.gnm1.ann1.XR7VEH Arachis hypogaea HOM05D006675 ORTHO05D008302 2.6e-08 62.0 57 57.9
CiPaw.12G069400 Carya illinoinensis HOM05D006675 ORTHO05D008302 2.6e-08 62.0 82 41.5
Nitab4.5_0002897g0050 Nicotiana tabacum HOM05D006675 ORTHO05D008302 2.6e-08 62.0 57 57.9
Peaxi162Scf00052g00336 Petunia axillaris HOM05D006675 ORTHO05D008302 2.6e-08 62.0 57 57.9
PGSC0003DMG400003501 Solanum tuberosum HOM05D006675 ORTHO05D008302 2.6e-08 62.0 57 54.4
EL10Ac5g11997 Beta vulgaris HOM05D006675 ORTHO05D008302 3.4e-08 61.6 60 53.3
Eucgr.E01313 Eucalyptus grandis HOM05D006675 ORTHO05D008302 4.4e-08 61.2 57 54.4
Lj2g0021996 Lotus japonicus HOM05D006675 ORTHO05D008302 4.4e-08 61.2 57 54.4
Sc10g0009260 Simmondsia chinensis HOM05D006675 ORTHO05D008302 4.4e-08 61.2 57 54.4
Manes.01G194600 Manihot esculenta HOM05D006675 ORTHO05D008302 5.8e-08 60.8 57 52.6
Sed0011153 Sechium edule HOM05D006675 ORTHO05D008302 5.8e-08 60.8 57 54.4
CSS0012354 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 7.6e-08 60.5 57 54.4
CSS0042811 Camellia sinensis var. sinensis HOM05D006675 ORTHO05D008302 7.6e-08 60.5 57 54.4
Eucgr.E01319 Eucalyptus grandis HOM05D006675 ORTHO05D008302 7.6e-08 60.5 57 52.6
Medtr5g028000 Medicago truncatula HOM05D006675 ORTHO05D008302 7.6e-08 60.5 57 56.1
QL12p001835 Quercus lobata HOM05D006675 ORTHO05D008302 7.6e-08 60.5 33 81.8
ClCG06G010630 Citrullus lanatus HOM05D006675 ORTHO05D008302 1.3e-07 59.7 34 76.5
MELO3C013816.2 Cucumis melo HOM05D006675 ORTHO05D008302 1.3e-07 59.7 57 52.6
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 1.3e-07 59.7 57 54.4
Thecc.03G311400 Theobroma cacao HOM05D006675 ORTHO05D008302 1.3e-07 59.7 57 52.6
GSVIVG01013027001 Vitis vinifera HOM05D006675 ORTHO05D008302 1.3e-07 59.7 57 52.6
Atru.chr3.2397 Acer truncatum HOM05D006675 ORTHO05D008302 1.7e-07 59.3 57 54.4
Actinidia01330 Actinidia chinensis HOM05D006675 ORTHO05D008302 1.7e-07 59.3 57 52.6
Aa31LG6G1700 Aethionema arabicum HOM05D006675 ORTHO05D008302 1.7e-07 59.3 33 78.8
MSTRG.1795 Avicennia marina HOM05D006675 ORTHO05D008302 1.7e-07 59.3 82 41.5
Carub.0007s2216 Capsella rubella HOM05D006675 ORTHO05D008302 1.7e-07 59.3 33 78.8
Cfa009033 Carpinus fangiana HOM05D006675 ORTHO05D008302 1.7e-07 59.3 57 54.4
COL.COLO4_16920 Corchorus olitorius HOM05D006675 ORTHO05D008302 1.7e-07 59.3 57 54.4
Duzib205G0370 Durio zibethinus HOM05D006675 ORTHO05D008302 1.7e-07 59.3 57 50.9
CAN.G773.29 Capsicum annuum HOM05D006675 ORTHO05D008302 2.2e-07 58.9 57 52.6
CsaV3_3G001280 Cucumis sativus L. HOM05D006675 ORTHO05D008302 2.2e-07 58.9 57 50.9
Dinv29017 Davidia involucrata HOM05D006675 ORTHO05D008302 2.2e-07 58.9 57 52.6
FvH4_5g23270 Fragaria vesca HOM05D006675 ORTHO05D008302 2.2e-07 58.9 57 52.6
FAN18G2874 Fragaria x ananassa HOM05D006675 ORTHO05D008302 2.2e-07 58.9 57 52.6
Oeu017091.1 Olea europaea HOM05D006675 ORTHO05D008302 2.2e-07 58.9 88 45.5
RcHm_v2.0_Chr7g0212211 Rosa chinensis HOM05D006675 ORTHO05D008302 2.2e-07 58.9 57 52.6
Ah.12g055570 Amaranthus hybridus HOM05D000160 ORTHO05D008302 2.9e-07 58.5 32 78.1
Prupe.4G182100 Prunus persica HOM05D006675 ORTHO05D008302 2.9e-07 58.5 33 78.8
THA.LOC104798450 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 2.9e-07 58.5 95 38.9
GSVIVG01009131001 Vitis vinifera HOM05D006675 ORTHO05D008302 2.9e-07 58.5 33 78.8
Ciclev10002637m.g Citrus clementina HOM05D006675 ORTHO05D008302 3.8e-07 58.2 57 54.4
Potri.001G135700 Populus trichocarpa HOM05D006675 ORTHO05D008302 3.8e-07 58.2 57 52.6
Sp7g17730 Schrenkiella parvula HOM05D006675 ORTHO05D008302 3.8e-07 58.2 33 75.8
SGA_v2.0_scaffold8G04421 Striga asiatica HOM05D006675 ORTHO05D008302 3.8e-07 58.2 60 50.0
TPR.G19460 Trifolium pratense HOM05D006675 ORTHO05D008302 3.8e-07 58.2 57 56.1
vmacro00263 Vaccinium macrocarpon HOM05D006675 ORTHO05D008302 3.8e-07 58.2 81 44.4
AL7G35150 Arabidopsis lyrata HOM05D006675 ORTHO05D008302 4.9e-07 57.8 33 75.8
AT4G19003 Arabidopsis thaliana HOM05D006675 ORTHO05D008302 4.9e-07 57.8 33 75.8
Sabra01G0105000 Salix brachista HOM05D006675 ORTHO05D008302 4.9e-07 57.8 55 52.7
AUR62007364 Chenopodium quinoa HOM05D006675 ORTHO05D008302 6.4e-07 57.4 33 72.7
FAN18G0120 Fragaria x ananassa HOM05D006675 ORTHO05D008302 6.4e-07 57.4 57 50.9
Gohir.A03G000027 Gossypium hirsutum HOM05D006675 ORTHO05D008302 8.4e-07 57.0 57 50.9
Gohir.D03G176700 Gossypium hirsutum HOM05D006675 ORTHO05D008302 8.4e-07 57.0 57 50.9
Gorai.003G186000 Gossypium raimondii HOM05D006675 ORTHO05D008302 8.4e-07 57.0 57 50.9
TWI60G1033 Tripterygium wilfordii HOM05D006675 ORTHO05D008302 8.4e-07 57.0 57 50.9
arahy.Tifrunner.gnm1.ann1.DBHH8D Arachis hypogaea HOM05D006675 ORTHO05D008302 1.1e-06 56.6 73 45.2
BcaC09g51446 Brassica carinata HOM05D000169 ORTHO05D008302 1.1e-06 56.6 33 72.7
BcaNung04023 Brassica carinata HOM05D006675 ORTHO05D008302 1.1e-06 56.6 33 72.7
BolC1t01279H Brassica oleracea HOM05D000169 ORTHO05D000542 1.1e-06 56.6 33 72.7
CARHR225840 Cardamine hirsuta HOM05D006675 ORTHO05D008302 1.1e-06 56.6 33 72.7
unitig_61.g26418 Utricularia gibba HOM05D006675 ORTHO05D008302 1.1e-06 56.6 57 49.1
Aqoxy5G00552 Aquilegia oxysepala HOM05D006675 ORTHO05D008302 1.4e-06 56.2 33 72.7
BraA01t01049Z Brassica rapa HOM05D006675 ORTHO05D008302 1.4e-06 56.2 33 72.7
CANSAT21G2314 Cannabis sativa HOM05D006675 ORTHO05D008302 1.4e-06 56.2 57 50.9
Cc08_g03740 Coffea canephora HOM05D006675 ORTHO05D008302 1.4e-06 56.2 57 52.6
Thhalv10015765m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 1.4e-06 56.2 33 72.7
Lsat_1_v5_gn_9_15400 Lactuca sativa HOM05D006675 ORTHO05D008302 1.4e-06 56.2 57 50.9
Mapoly0004s0185 Marchantia polymorpha HOM05D006675 ORTHO05D008302 1.4e-06 56.2 67 47.8
SalBow8G0964 Salvia bowleyana HOM05D006675 ORTHO05D008302 1.4e-06 56.2 33 72.7
HPP92_023365 Vanilla planifolia HOM05D006675 ORTHO05D008302 1.4e-06 56.2 57 52.6
Actinidia29284 Actinidia chinensis HOM05D006675 ORTHO05D008302 1.9e-06 55.8 35 74.3
C01p13040 Brassica napus HOM05D000169 ORTHO05D000542 1.9e-06 55.8 33 72.7
Thhalv10026368m.g Eutrema salsugineum HOM05D006675 ORTHO05D008302 1.9e-06 55.8 57 49.1
PGR042G1238 Punica granatum HOM05D006675 ORTHO05D008302 1.9e-06 55.8 57 52.6
Haze_12062 Corylus avellana HOM05D006675 ORTHO05D008302 2.4e-06 55.5 57 50.9
PSO170G4469 Papaver somniferum HOM05D006675 ORTHO05D008302 3.2e-06 55.1 32 71.9
Zm00001eb157890 Zea mays HOM05D006675 ORTHO05D008302 3.2e-06 55.1 57 49.1
DCAR_024956 Daucus carota HOM05D006675 ORTHO05D008302 4.2e-06 54.7 58 51.7
HanXRQChr12g0362191 Helianthus annuus HOM05D006675 ORTHO05D008302 4.2e-06 54.7 57 50.9
Hma1.2p1_0803F.1_g220920 Hydrangea macrophylla HOM05D006675 ORTHO05D008302 4.2e-06 54.7 29 79.3
ATR0796G253 Amborella trichopoda HOM05D006675 ORTHO05D008302 5.4e-06 54.3 33 69.7
Lj8A133G65 Lonicera japonica HOM05D006675 ORTHO05D008302 5.4e-06 54.3 57 49.1
THA.LOC104806177 Tarenaya hassleriana HOM05D006675 ORTHO05D008302 5.4e-06 54.3 33 72.7
Nitab4.5_0002188g0010 Nicotiana tabacum HOM05D006675 ORTHO05D008302 7.1e-06 53.9 33 75.8


User provided reference genes

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