Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G132800 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 2.3e-244 848.6 459 100.0
Glyma.01G009900 Glycine max HOM05D005120 ORTHO05D006174 2.7e-221 771.9 459 90.4
Glyma.09G211200 Glycine max HOM05D005120 ORTHO05D006174 2.8e-218 761.9 459 89.8
Lj4g0011317 Lotus japonicus HOM05D005120 ORTHO05D006174 1.9e-190 669.5 459 78.2
Cfa012552 Carpinus fangiana HOM05D005120 ORTHO05D006174 2.3e-188 662.5 459 76.7
Glyma.16G095100 Glycine max HOM05D005120 ORTHO05D006174 3.0e-188 662.1 457 78.3
Phvul.003G274000 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 1.5e-187 659.8 452 78.3
CiPaw.11G101100 Carya illinoinensis HOM05D005120 ORTHO05D006174 4.3e-187 658.3 459 75.2
Lalb_Chr16g0391911 Lupinus albus HOM05D005120 ORTHO05D006174 9.7e-187 657.1 452 78.8
Medtr8g070830 Medicago truncatula HOM05D005120 ORTHO05D006174 2.8e-186 655.6 445 80.4
CANSAT21G0750 Cannabis sativa HOM05D005120 ORTHO05D006174 8.2e-186 654.1 459 75.4
Potri.003G099600 Populus trichocarpa HOM05D005120 ORTHO05D006174 8.2e-186 654.1 459 74.7
Lalb_Chr16g0380871 Lupinus albus HOM05D005120 ORTHO05D006174 9.1e-185 650.6 451 76.5
Sabra03G0067700 Salix brachista HOM05D005120 ORTHO05D006174 9.1e-185 650.6 459 75.6
QL12p000342 Quercus lobata HOM05D005120 ORTHO05D006174 1.2e-184 650.2 458 75.1
VMungo0251G1066 Vigna mungo HOM05D005120 ORTHO05D006174 1.5e-184 649.8 452 77.2
Manes.17G006500 Manihot esculenta HOM05D005120 ORTHO05D006174 1.7e-183 646.4 459 74.1
Prupe.5G024500 Prunus persica HOM05D005120 ORTHO05D006174 1.9e-182 642.9 459 74.5
Psat4g111760 Pisum sativum HOM05D005120 ORTHO05D006174 4.2e-182 641.7 458 76.0
Eucgr.E01259 Eucalyptus grandis HOM05D005120 ORTHO05D006174 9.4e-182 640.6 459 73.2
MD06G1023600 Malus domestica HOM05D005120 ORTHO05D006174 1.6e-181 639.8 459 75.6
Duzib205G1724 Durio zibethinus HOM05D005120 ORTHO05D006174 3.6e-181 638.6 459 73.6
arahy.Tifrunner.gnm1.ann1.H9FFKJ Arachis hypogaea HOM05D005120 ORTHO05D006174 6.1e-181 637.9 452 76.3
Thecc.03G314000 Theobroma cacao HOM05D005120 ORTHO05D006174 6.1e-181 637.9 450 74.0
FvH4_5g23540 Fragaria vesca HOM05D005120 ORTHO05D006174 1.0e-180 637.1 435 78.4
FAN18G2593 Fragaria x ananassa HOM05D005120 ORTHO05D006174 1.0e-180 637.1 435 78.4
FAN04G0205 Fragaria x ananassa HOM05D005120 ORTHO05D006174 1.4e-180 636.7 451 76.1
TWI60G0565 Tripterygium wilfordii HOM05D005120 ORTHO05D006174 1.4e-180 636.7 458 73.6
FAN08G2640 Fragaria x ananassa HOM05D005120 ORTHO05D006174 2.3e-180 636.0 451 76.1
FAN18G1216 Fragaria x ananassa HOM05D005120 ORTHO05D006174 2.3e-180 636.0 435 78.2
Gohir.A03G000018 Gossypium hirsutum HOM05D005120 ORTHO05D006174 1.1e-179 633.6 459 72.3
Cc08_g03980 Coffea canephora HOM05D005120 ORTHO05D006174 1.5e-179 633.3 451 73.8
Gorai.003G186700 Gossypium raimondii HOM05D005120 ORTHO05D006174 2.0e-179 632.9 459 72.1
GSVIVG01029984001 Vitis vinifera HOM05D005120 ORTHO05D006174 2.0e-179 632.9 436 76.6
RcHm_v2.0_Chr7g0212851 Rosa chinensis HOM05D005120 ORTHO05D006174 2.6e-179 632.5 458 75.1
Gohir.D03G177466 Gossypium hirsutum HOM05D005120 ORTHO05D006174 4.4e-179 631.7 459 72.1
TPR.G6179 Trifolium pratense HOM05D005120 ORTHO05D006174 4.4e-179 631.7 489 71.0
ClCG07G002270 Citrullus lanatus HOM05D005120 ORTHO05D006174 2.8e-178 629.0 448 74.6
MELO3C026723.2 Cucumis melo HOM05D005120 ORTHO05D006174 2.8e-178 629.0 438 75.1
Solyc08g076290.3 Solanum lycopersicum HOM05D005120 ORTHO05D006174 6.3e-178 627.9 434 76.3
Sopen08g024900 Solanum pennellii HOM05D005120 ORTHO05D006174 6.3e-178 627.9 434 76.3
C05p31470 Brassica napus HOM05D005120 ORTHO05D006174 1.1e-177 627.1 459 72.5
BolC5t31871H Brassica oleracea HOM05D005120 ORTHO05D006174 1.1e-177 627.1 459 72.5
COL.COLO4_16896 Corchorus olitorius HOM05D005120 ORTHO05D006174 1.4e-177 626.7 459 72.3
Thhalv10007389m.g Eutrema salsugineum HOM05D005120 ORTHO05D006174 1.4e-177 626.7 443 74.5
Atru.chr6.1569 Acer truncatum HOM05D005120 ORTHO05D006174 1.8e-177 626.3 459 71.9
BcaC05g27233 Brassica carinata HOM05D005120 ORTHO05D006174 1.8e-177 626.3 459 72.5
Haze_08107 Corylus avellana HOM05D005120 ORTHO05D006174 3.1e-177 625.5 513 67.8
Nitab4.5_0000543g0120 Nicotiana tabacum HOM05D005120 ORTHO05D006174 3.1e-177 625.5 434 75.8
PGR042G0860 Punica granatum HOM05D005120 ORTHO05D006174 3.1e-177 625.5 439 74.5
PGSC0003DMG402009291 Solanum tuberosum HOM05D005120 ORTHO05D006174 3.1e-177 625.5 434 75.8
BraA09t38958Z Brassica rapa HOM05D005120 ORTHO05D006174 4.1e-177 625.2 459 72.3
THA.LOC104798500 Tarenaya hassleriana HOM05D005120 ORTHO05D006174 4.1e-177 625.2 444 74.3
arahy.Tifrunner.gnm1.ann1.PMQ83Q Arachis hypogaea HOM05D005120 ORTHO05D006174 9.1e-177 624.0 445 76.0
Carub.0001s3040 Capsella rubella HOM05D005120 ORTHO05D006174 1.2e-176 623.6 428 76.6
CARHR031430 Cardamine hirsuta HOM05D005120 ORTHO05D006174 1.2e-176 623.6 444 74.1
Ca_22546_v3 Cicer arietinum L. HOM05D005120 ORTHO05D006174 2.0e-176 622.9 406 81.3
Nn1g01918 Nelumbo nucifera HOM05D005120 ORTHO05D006174 2.0e-176 622.9 421 77.9
CsaV3_3G030430 Cucumis sativus L. HOM05D005120 ORTHO05D006174 3.4e-176 622.1 438 75.1
TAR374G0846 Trochodendron aralioides HOM05D005120 ORTHO05D006174 3.4e-176 622.1 436 75.2
AT1G32080 Arabidopsis thaliana HOM05D005120 ORTHO05D006174 5.9e-176 621.3 428 75.9
Sp1g27750 Schrenkiella parvula HOM05D005120 ORTHO05D006174 5.9e-176 621.3 460 72.6
Cpa.g.sc757.1 Carica papaya HOM05D005120 ORTHO05D006174 1.0e-175 620.5 441 73.7
AL1G46150 Arabidopsis lyrata HOM05D005120 ORTHO05D006174 2.9e-175 619.0 428 75.9
Sed0007636 Sechium edule HOM05D005120 ORTHO05D006174 3.8e-175 618.6 455 72.7
Rhsim11G0027600 Rhododendron simsii HOM05D005120 ORTHO05D006174 6.5e-175 617.8 461 71.8
Aa31LG2G13920 Aethionema arabicum HOM05D005120 ORTHO05D006174 1.1e-174 617.1 428 75.5
Nitab4.5_0006395g0010 Nicotiana tabacum HOM05D005120 ORTHO05D006174 2.5e-174 615.9 424 75.9
BcaB03g13768 Brassica carinata HOM05D005120 ORTHO05D006174 3.2e-174 615.5 428 75.9
BcaC05g27930 Brassica carinata HOM05D005120 ORTHO05D006174 4.2e-174 615.1 428 75.5
SGA_v2.0_scaffold89G27426 Striga asiatica HOM05D005120 ORTHO05D006174 5.5e-174 614.8 447 72.3
MSTRG.11896 Avicennia marina HOM05D005120 ORTHO05D006174 1.2e-173 613.6 439 73.6
Sed0003941 Sechium edule HOM05D005120 ORTHO05D006174 1.2e-173 613.6 455 71.0
Dinv29029 Davidia involucrata HOM05D005120 ORTHO05D006174 1.6e-173 613.2 430 74.9
SGA_v2.0_scaffold42G16013 Striga asiatica HOM05D005120 ORTHO05D006174 3.6e-173 612.1 430 75.1
Migut.A00586 Erythranthe guttata HOM05D005120 ORTHO05D006174 6.1e-173 611.3 442 72.6
BraA05t21413Z Brassica rapa HOM05D005120 ORTHO05D006174 7.9e-173 610.9 460 72.0
Sc07g0008440 Simmondsia chinensis HOM05D005120 ORTHO05D006174 7.9e-173 610.9 445 72.6
SalBow1G1967 Salvia bowleyana HOM05D005120 ORTHO05D006174 3.0e-172 609.0 441 73.5
Lsat_1_v5_gn_6_17781 Lactuca sativa HOM05D005120 ORTHO05D006174 3.9e-172 608.6 431 74.0
Oeu042231.1 Olea europaea HOM05D005120 ORTHO05D006174 2.6e-171 605.9 455 69.7
Aqoxy7G00879 Aquilegia oxysepala HOM05D005120 ORTHO05D006174 5.7e-171 604.7 455 71.4
Peaxi162Scf00408g00023 Petunia axillaris HOM05D005120 ORTHO05D006174 9.7e-171 604.0 413 75.5
Aa31LG2G11060 Aethionema arabicum HOM05D005120 ORTHO05D006174 1.3e-170 603.6 455 71.6
Hund14388 Selenicereus undatus HOM05D005120 ORTHO05D006174 2.4e-169 599.4 448 70.5
BcaB07g32869 Brassica carinata HOM05D005120 ORTHO05D006174 7.0e-169 597.8 459 70.8
MBI04_g36023_MAGBIO Magnolia biondii HOM05D005120 ORTHO05D006174 9.1e-169 597.4 459 68.8
vmacro00236 Vaccinium macrocarpon HOM05D005120 ORTHO05D006174 1.2e-168 597.0 435 73.3
Ah.07g201110 Amaranthus hybridus HOM05D005120 ORTHO05D006174 2.0e-168 596.3 436 71.8
arahy.Tifrunner.gnm1.ann1.1W9K9Y Arachis hypogaea HOM05D005120 ORTHO05D006174 2.6e-168 595.9 458 69.4
arahy.Tifrunner.gnm1.ann1.5B6WJ4 Arachis hypogaea HOM05D005120 ORTHO05D006174 2.6e-168 595.9 458 69.4
CAN.G773.16 Capsicum annuum HOM05D005120 ORTHO05D006174 1.0e-167 594.0 416 75.5
AUR62018612 Chenopodium quinoa HOM05D005120 ORTHO05D006174 1.7e-167 593.2 477 67.7
AUR62007376 Chenopodium quinoa HOM05D005120 ORTHO05D006174 1.5e-166 590.1 405 76.0
C05p39360 Brassica napus HOM05D005120 ORTHO05D006174 3.2e-166 589.0 414 74.9
BolC5t32672H Brassica oleracea HOM05D005120 ORTHO05D006174 3.2e-166 589.0 414 74.9
HanXRQChr02g0050021 Helianthus annuus HOM05D005120 ORTHO05D006174 1.2e-165 587.0 433 70.9
EL10Ac5g11981 Beta vulgaris HOM05D005120 ORTHO05D006174 2.7e-165 585.9 435 72.2
CDE06G0533 Ceratophyllum demersum HOM05D005120 ORTHO05D006174 2.7e-165 585.9 452 69.7
A05p25290 Brassica napus HOM05D005120 ORTHO05D006174 4.7e-165 585.1 446 71.3
Hund11160 Selenicereus undatus HOM05D005120 ORTHO05D006174 8.0e-165 584.3 471 66.0
Os01g0511600 Oryza sativa ssp. japonica HOM05D005120 ORTHO05D006174 1.0e-164 583.9 419 71.8
Actinidia27272 Actinidia chinensis HOM05D005120 ORTHO05D006174 3.0e-164 582.4 434 70.3
Lj8A318T44 Lonicera japonica HOM05D005120 ORTHO05D006174 4.0e-164 582.0 433 72.3
ATR0829G037 Amborella trichopoda HOM05D005120 ORTHO05D006174 2.6e-163 579.3 421 72.2
A09p34100 Brassica napus HOM05D005120 ORTHO05D006174 2.6e-163 579.3 431 71.5
PSO717G0011 Papaver somniferum HOM05D005120 ORTHO05D006174 7.5e-163 577.8 417 73.6
Nn3g19343 Nelumbo nucifera HOM05D005120 ORTHO05D006174 5.3e-161 571.6 421 71.0
ECA233G2235 Erigeron canadensis HOM05D005120 ORTHO05D006174 9.1e-161 570.9 420 72.9
PSO675G2578 Papaver somniferum HOM05D005120 ORTHO05D006174 2.0e-160 569.7 417 72.9
Zm00001eb025160 Zea mays HOM05D005120 ORTHO05D006174 1.2e-157 560.5 444 67.3
DCAR_004262 Daucus carota HOM05D005120 ORTHO05D006174 2.1e-149 533.1 444 65.8
Atru.chr6.1566 Acer truncatum HOM05D005120 ORTHO05D006174 3.6e-149 532.3 460 65.0
CSS0018999 Camellia sinensis var. sinensis HOM05D005120 ORTHO05D006174 2.0e-147 526.6 422 68.2
unitig_747.g21935 Utricularia gibba HOM05D005120 ORTHO05D006174 6.6e-143 511.5 457 62.4
AagrBONN_evm.TU.Sc2ySwM_117.3701 Anthoceros agrestis HOM05D005120 ORTHO05D006174 1.5e-134 483.8 417 60.7
Mapoly0008s0007 Marchantia polymorpha HOM05D005120 ORTHO05D006174 2.2e-130 469.9 443 57.3
Pp3c1_16500 Physcomitrium patens HOM05D005120 ORTHO05D006174 1.4e-129 467.2 416 58.4
Actinidia01339 Actinidia chinensis HOM05D005120 ORTHO05D006174 2.9e-122 443.0 341 71.0
SMO347G0341 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 9.2e-113 411.4 367 60.5
Ciclev10003461m.g Citrus clementina HOM05D005120 ORTHO05D006174 4.0e-108 396.0 304 68.1
Dinv06901 Davidia involucrata HOM05D005120 ORTHO05D006174 3.0e-103 379.8 281 69.8
Atru.chr6.1568 Acer truncatum HOM05D005120 ORTHO05D006174 2.4e-100 370.2 230 84.8
Lalb_Chr16g0380881 Lupinus albus HOM05D005120 ORTHO05D006174 5.4e-97 359.0 454 50.0
PRCOL_00000663 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 3.0e-95 353.2 434 47.7
Cre09.g394850 Chlamydomonas reinhardtii HOM05D005120 ORTHO05D006174 1.8e-76 290.8 414 43.2
Atru.chr6.1567 Acer truncatum HOM05D005120 ORTHO05D006174 2.2e-74 283.9 231 62.3
FAN13G2921 Fragaria x ananassa HOM05D005120 ORTHO05D006174 2.7e-72 276.9 299 56.5
Glyma.08G265967 Glycine max HOM05D005120 ORTHO05D006174 1.0e-71 275.0 175 85.7
SMO367G1009 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 2.8e-69 266.9 386 39.1
CANSAT64G2484 Cannabis sativa HOM05D005120 ORTHO05D006174 2.6e-67 260.4 156 89.1
Pp3c4_7680 Physcomitrium patens HOM05D005120 ORTHO05D006174 1.3e-61 241.5 410 35.1
Zm00001eb025140 Zea mays HOM05D005120 ORTHO05D006174 1.2e-56 224.9 214 56.5
AagrBONN_evm.TU.Sc2ySwM_368.2516 Anthoceros agrestis HOM05D005120 ORTHO05D006174 2.2e-53 214.2 352 36.4
CBR_g23155 Chara braunii HOM05D005120 ORTHO05D006174 4.8e-53 213.0 162 68.5
PRCOL_00006607 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 1.6e-51 208.0 451 34.8
arahy.Tifrunner.gnm1.ann1.B01XES Arachis hypogaea HOM05D005120 ORTHO05D006174 5.2e-47 193.0 241 49.4
SEGI_09610 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 1.0e-34 152.1 126 57.9
PGR044G1750 Punica granatum HOM05D005120 ORTHO05D006174 7.0e-28 129.4 115 61.7
SEGI_28661 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 6.6e-26 122.9 118 60.2
VMungo0647G0996 Vigna mungo HOM05D005120 ORTHO05D006174 2.3e-23 114.4 98 68.4
CARHR291910 Cardamine hirsuta HOM05D005120 ORTHO05D006174 1.3e-21 108.6 85 63.5
CBR_g23153 Chara braunii HOM05D005120 ORTHO05D006174 3.7e-21 107.1 123 50.4
MCO13G610 Micromonas commoda HOM05D005120 ORTHO05D006174 3.7e-21 107.1 387 25.6
PRCOL_00001036 Prasinoderma coloniale HOM05D001145 ORTHO05D014381 5.2e-15 86.7 422 25.6
Oeu023967.3 Olea europaea HOM05D005120 ORTHO05D006174 9.8e-14 82.4 94 50.0
PRCOL_00005007 Prasinoderma coloniale HOM05D013059 ORTHO05D014381 1.9e-12 78.2 220 30.9
CDE03G0049 Ceratophyllum demersum HOM05D005120 ORTHO05D006174 4.7e-08 63.5 67 58.2


User provided reference genes

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