Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G127200 Phaseolus vulgaris HOM05D004914 ORTHO05D006512 0.0e+00 1381.3 714 100.0
VMungo1215G3133 Vigna mungo HOM05D004914 ORTHO05D006512 0.0e+00 1322.4 715 95.4
Glyma.04G123700 Glycine max HOM05D004914 ORTHO05D006512 0.0e+00 1291.6 715 93.6
Lj2g0015407 Lotus japonicus HOM05D004914 ORTHO05D006512 0.0e+00 1283.1 712 91.3
Medtr5g026640 Medicago truncatula HOM05D004914 ORTHO05D006512 0.0e+00 1279.2 712 91.2
Psat2g142640 Pisum sativum HOM05D004914 ORTHO05D006512 0.0e+00 1277.7 712 90.3
TPR.G17253 Trifolium pratense HOM05D004914 ORTHO05D006512 0.0e+00 1274.6 712 91.2
arahy.Tifrunner.gnm1.ann1.AE6EEZ Arachis hypogaea HOM05D004914 ORTHO05D006512 0.0e+00 1237.2 714 89.5
arahy.Tifrunner.gnm1.ann1.Q0IN0Q Arachis hypogaea HOM05D004914 ORTHO05D006512 0.0e+00 1237.2 714 89.5
Dinv37416 Davidia involucrata HOM05D004914 ORTHO05D006512 0.0e+00 1226.1 711 87.5
CSS0049486 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1224.9 713 87.2
TAR375G1103 Trochodendron aralioides HOM05D004914 ORTHO05D006512 0.0e+00 1224.9 702 87.2
Lalb_Chr05g0215361 Lupinus albus HOM05D004914 ORTHO05D006512 0.0e+00 1222.2 689 89.8
GSVIVG01022810001 Vitis vinifera HOM05D004914 ORTHO05D006512 0.0e+00 1219.9 708 86.7
CSS0032490 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1219.5 713 87.0
Prupe.5G019100 Prunus persica HOM05D004914 ORTHO05D006512 0.0e+00 1215.7 711 86.1
MD06G1017300 Malus domestica HOM05D004914 ORTHO05D006512 0.0e+00 1215.3 712 86.2
Ciclev10000444m.g Citrus clementina HOM05D004914 ORTHO05D006512 0.0e+00 1214.9 705 87.0
Cc08_g05310 Coffea canephora HOM05D004914 ORTHO05D006512 0.0e+00 1209.9 715 84.9
Nn1g02045 Nelumbo nucifera HOM05D004914 ORTHO05D006512 0.0e+00 1205.3 704 86.1
MSTRG.25735 Avicennia marina HOM05D004914 ORTHO05D006512 0.0e+00 1202.6 704 85.5
PGR042G1968 Punica granatum HOM05D004914 ORTHO05D006512 0.0e+00 1201.4 710 84.9
Atru.chr6.2105 Acer truncatum HOM05D004914 ORTHO05D006512 0.0e+00 1200.3 711 86.1
CiPaw.13G121600 Carya illinoinensis HOM05D004914 ORTHO05D006512 0.0e+00 1200.3 701 86.6
Manes.17G007000 Manihot esculenta HOM05D004914 ORTHO05D006512 0.0e+00 1200.3 704 85.8
Potri.003G104000 Populus trichocarpa HOM05D004914 ORTHO05D006512 0.0e+00 1200.3 699 87.0
Oeu046797.1 Olea europaea HOM05D004914 ORTHO05D006512 0.0e+00 1199.9 718 85.2
RcHm_v2.0_Chr7g0213721 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1197.6 704 86.5
Eucgr.E01217 Eucalyptus grandis HOM05D004914 ORTHO05D006512 0.0e+00 1197.2 704 84.5
Peaxi162Scf00053g00525 Petunia axillaris HOM05D004914 ORTHO05D006512 0.0e+00 1196.0 705 86.5
FvH4_5g24140 Fragaria vesca HOM05D004914 ORTHO05D006512 0.0e+00 1195.6 704 86.4
CANSAT35G0949 Cannabis sativa HOM05D004914 ORTHO05D006512 0.0e+00 1192.6 707 85.3
TWI12G0750 Tripterygium wilfordii HOM05D004914 ORTHO05D006512 0.0e+00 1189.9 699 86.6
CSS0043328 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1189.5 704 86.4
HanXRQChr13g0411091 Helianthus annuus HOM05D004914 ORTHO05D006512 0.0e+00 1185.6 698 85.5
RcHm_v2.0_Chr7g0213811 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1184.5 705 86.0
Nn3g19257 Nelumbo nucifera HOM05D004914 ORTHO05D006512 0.0e+00 1182.9 706 85.0
Solyc08g075570.4 Solanum lycopersicum HOM05D004914 ORTHO05D006512 0.0e+00 1179.9 702 85.3
Duzib205G0746 Durio zibethinus HOM05D004914 ORTHO05D006512 0.0e+00 1175.6 700 83.9
ECA240G3397 Erigeron canadensis HOM05D004914 ORTHO05D006512 0.0e+00 1175.2 699 83.8
Aqoxy7G00885 Aquilegia oxysepala HOM05D004914 ORTHO05D006512 0.0e+00 1174.1 700 84.4
ATR0829G119 Amborella trichopoda HOM05D004914 ORTHO05D006512 0.0e+00 1172.9 706 83.6
Sopen08g024250 Solanum pennellii HOM05D004914 ORTHO05D006512 0.0e+00 1172.9 702 85.2
Sabra03G0071100 Salix brachista HOM05D004914 ORTHO05D006512 0.0e+00 1172.5 727 83.1
Thecc.03G324700 Theobroma cacao HOM05D004914 ORTHO05D006512 0.0e+00 1172.1 693 84.4
Lsat_1_v5_gn_5_55660 Lactuca sativa HOM05D004914 ORTHO05D006512 0.0e+00 1169.8 701 83.3
Eucgr.E01215 Eucalyptus grandis HOM05D004914 ORTHO05D006512 0.0e+00 1169.1 712 82.6
RcHm_v2.0_Chr4g0401521 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1160.6 704 83.8
RcHm_v2.0_Chr4g0401421 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1159.4 704 83.7
CSS0023780 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1154.8 712 84.1
SalBow4G0569 Salvia bowleyana HOM05D004914 ORTHO05D006512 0.0e+00 1154.4 696 83.2
Gorai.005G228700 Gossypium raimondii HOM05D004914 ORTHO05D006512 0.0e+00 1149.4 694 83.0
HPP92_015125 Vanilla planifolia HOM05D004914 ORTHO05D006512 0.0e+00 1148.7 711 81.7
DCAR_006313 Daucus carota HOM05D004914 ORTHO05D006512 0.0e+00 1139.0 712 81.6
Gohir.D02G202952 Gossypium hirsutum HOM05D004914 ORTHO05D006512 0.0e+00 1130.5 694 81.7
CsaV3_3G001000 Cucumis sativus L. HOM05D004914 ORTHO05D006512 0.0e+00 1129.0 709 79.3
MELO3C013790.2 Cucumis melo HOM05D004914 ORTHO05D006512 0.0e+00 1128.6 709 79.0
vmacro00075 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 0.0e+00 1127.5 718 81.2
Rhsim11G0034500 Rhododendron simsii HOM05D004914 ORTHO05D006512 0.0e+00 1127.1 716 81.7
Ca_25087_v3 Cicer arietinum L. HOM05D004914 ORTHO05D006512 0.0e+00 1119.4 617 92.1
CSS0040630 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1116.7 742 79.2
Actinidia01258 Actinidia chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1116.3 708 81.6
Sed0010004 Sechium edule HOM05D004914 ORTHO05D006512 0.0e+00 1116.3 708 78.4
BcaB07g30888 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1115.9 700 80.1
Aa31LG9G7630 Aethionema arabicum HOM05D004914 ORTHO05D006512 0.0e+00 1115.5 700 80.4
Carub.0008s0273 Capsella rubella HOM05D004914 ORTHO05D006512 0.0e+00 1115.1 700 79.1
C09p27840 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1114.4 700 79.7
QL12p001913 Quercus lobata HOM05D004914 ORTHO05D006512 0.0e+00 1114.4 703 82.4
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 0.0e+00 1114.0 657 85.5
BcaC04g21765 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1113.6 700 79.7
BolC9t55648H Brassica oleracea HOM05D004914 ORTHO05D006512 0.0e+00 1113.6 700 79.7
BraA09t37776Z Brassica rapa HOM05D004914 ORTHO05D006512 0.0e+00 1112.4 700 79.7
A09p21740 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1112.1 700 79.6
ClCG10G000930 Citrullus lanatus HOM05D004914 ORTHO05D006512 0.0e+00 1106.3 709 77.9
PSO717G0130 Papaver somniferum HOM05D004914 ORTHO05D006512 0.0e+00 1105.9 713 80.4
AT5G45380 Arabidopsis thaliana HOM05D004914 ORTHO05D006512 0.0e+00 1104.4 699 78.5
CARHR176690 Cardamine hirsuta HOM05D004914 ORTHO05D006512 0.0e+00 1104.4 701 78.6
SEGI_38788 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 0.0e+00 1103.2 704 78.3
Thhalv10000803m.g Eutrema salsugineum HOM05D004914 ORTHO05D006512 0.0e+00 1101.7 698 78.1
BraA02t07943Z Brassica rapa HOM05D004914 ORTHO05D006512 0.0e+00 1100.5 710 77.5
A02p29100 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1099.3 710 77.5
Sp2g10330 Schrenkiella parvula HOM05D004914 ORTHO05D006512 0.0e+00 1098.2 706 78.0
BcaC03g16746 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1095.9 710 77.5
C02p46180 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1095.9 710 77.5
BolC2t10674H Brassica oleracea HOM05D004914 ORTHO05D006512 0.0e+00 1095.9 710 77.5
CAN.G1731.1 Capsicum annuum HOM05D004914 ORTHO05D006512 0.0e+00 1094.0 700 80.3
BcaB07g30458 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1092.4 710 76.8
CDE12G0485 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 0.0e+00 1090.5 698 78.1
FAN13G2505 Fragaria x ananassa HOM05D004914 ORTHO05D006512 0.0e+00 1086.6 725 78.8
Eucgr.E01216 Eucalyptus grandis HOM05D004914 ORTHO05D006512 0.0e+00 1080.1 618 86.4
QL12p001923 Quercus lobata HOM05D004914 ORTHO05D006512 7.0e-309 1063.5 686 81.0
Migut.A00542 Erythranthe guttata HOM05D004914 ORTHO05D006512 9.4e-306 1053.1 659 81.3
FAN04G0884 Fragaria x ananassa HOM05D004914 ORTHO05D006512 4.7e-305 1050.8 694 79.3
AL8G13420 Arabidopsis lyrata HOM05D004914 ORTHO05D006512 8.0e-305 1050.0 701 75.6
EL10Ac5g11909 Beta vulgaris HOM05D004914 ORTHO05D006512 3.7e-302 1041.2 692 76.7
SGA_v2.0_scaffold96G29079 Striga asiatica HOM05D004914 ORTHO05D006512 4.8e-302 1040.8 700 77.9
Os10g0580400 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D006512 7.7e-300 1033.5 710 74.2
Zm00001eb279810 Zea mays HOM05D004914 ORTHO05D006512 2.2e-299 1031.9 711 73.8
Mapoly0022s0194 Marchantia polymorpha HOM05D004914 ORTHO05D006512 4.2e-298 1027.7 703 74.8
SMO134G0146 Selaginella moellendorffii HOM05D004914 ORTHO05D006512 1.8e-296 1022.3 660 78.2
Pp3c1_21890 Physcomitrium patens HOM05D004914 ORTHO05D006512 9.8e-295 1016.5 704 73.0
unitig_92.g28131 Utricularia gibba HOM05D004914 ORTHO05D006512 1.8e-288 995.7 702 73.9
Gohir.A03G179800 Gossypium hirsutum HOM05D004914 ORTHO05D006512 2.8e-286 988.4 584 85.3
Pp3c14_7160 Physcomitrium patens HOM05D004914 ORTHO05D006512 2.4e-285 985.3 647 75.9
CSS0001315 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 4.1e-285 984.6 740 72.4
AUR62027313 Chenopodium quinoa HOM05D004914 ORTHO05D006512 9.5e-282 973.4 694 73.2
FAN18G4324 Fragaria x ananassa HOM05D004914 ORTHO05D006512 4.4e-279 964.5 569 86.5
Nitab4.5_0016045g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 1.3e-278 963.0 541 90.2
vmacro00050 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 1.5e-258 896.3 736 66.8
Lj8C331T9 Lonicera japonica HOM05D004914 ORTHO05D006512 2.8e-257 892.1 708 68.8
CDE01G0684 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 2.1e-252 875.9 708 65.4
Mapoly0244s0005 Marchantia polymorpha HOM05D004914 ORTHO05D006512 2.8e-241 839.0 538 80.3
AUR62007419 Chenopodium quinoa HOM05D004914 ORTHO05D006512 2.0e-239 832.8 520 81.0
AagrBONN_evm.TU.Sc2ySwM_344.881 Anthoceros agrestis HOM05D004914 ORTHO05D006512 3.4e-239 832.0 567 74.4
PGSC0003DMG401007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 6.0e-228 794.7 451 90.2
MCO16G134 Micromonas commoda HOM05D004914 ORTHO05D006512 1.4e-211 740.3 693 56.1
COL.COLO4_37234 Corchorus olitorius HOM05D004914 ORTHO05D006512 3.4e-207 725.7 619 62.7
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 3.2e-197 692.6 629 56.1
CSS0015562 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.1e-194 684.1 556 68.5
SEGI_09515 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 7.7e-191 671.4 409 83.6
SEGI_28013 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 1.7e-190 670.2 397 85.4
Cre08.g360200 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 7.5e-178 628.2 652 51.2
Nitab4.5_0011552g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 1.8e-176 623.6 517 66.2
Cre08.g360250 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 4.1e-168 595.9 638 50.0
Cre17.g703800 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 4.5e-167 592.4 639 49.8
CSS0048600 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 9.2e-152 541.6 399 73.4
AagrBONN_evm.TU.Sc2ySwM_117.1801 Anthoceros agrestis HOM05D004914 ORTHO05D006512 3.0e-142 510.0 630 43.2
Mapoly0006s0303 Marchantia polymorpha HOM05D004914 ORTHO05D006512 5.1e-142 509.2 640 42.7
Oeu046798.1 Olea europaea HOM05D004914 ORTHO05D006512 1.4e-136 491.1 722 43.2
AagrBONN_evm.TU.Sc2ySwM_117.1769 Anthoceros agrestis HOM05D004914 ORTHO05D006512 2.4e-136 490.3 641 41.8
AagrBONN_evm.TU.Sc2ySwM_228.2050 Anthoceros agrestis HOM05D004914 ORTHO05D006512 8.7e-134 481.9 624 42.9
SEGI_18257 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 5.3e-131 472.6 307 75.2
AagrBONN_evm.TU.Sc2ySwM_228.2053 Anthoceros agrestis HOM05D004914 ORTHO05D006512 3.0e-110 403.7 399 53.4
Mapoly0339s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 2.1e-108 397.5 249 81.5
CSS0040069 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.2e-103 381.7 399 56.4
PGSC0003DMG402007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 5.0e-89 333.2 219 74.0
SEGI_16876 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 7.7e-74 282.7 229 67.2
FAN18G1875 Fragaria x ananassa HOM05D004914 ORTHO05D006512 1.5e-56 225.3 129 85.3
CSS0006727 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 5.2e-54 216.9 171 70.2
Mapoly1910s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 5.8e-37 160.2 138 56.5
CSS0011428 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.3e-30 138.3 78 85.9
AagrBONN_evm.TU.Sc2ySwM_117.1738 Anthoceros agrestis HOM05D004914 ORTHO05D038447 2.1e-26 125.2 101 62.4
arahy.Tifrunner.gnm1.ann1.N8W4DB Arachis hypogaea HOM05D004914 ORTHO05D000389 5.1e-25 120.6 63 85.7
arahy.Tifrunner.gnm1.ann1.3D8EL1 Arachis hypogaea HOM05D004914 ORTHO05D000389 2.8e-23 114.8 59 88.1
CBR_g12519 Chara braunii HOM05D004914 ORTHO05D006512 1.1e-22 112.8 101 59.4
CSS0009431 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D113607 7.3e-16 90.1 67 73.1
CSS0001366 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112087 2.1e-15 88.6 67 71.6
Os02g0689066 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D038447 4.8e-15 87.4 56 75.0
CSS0040812 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D111646 5.3e-14 84.0 62 72.6
CSS0022754 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D109566 2.0e-13 82.0 62 72.6
CSS0022246 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112219 2.2e-12 78.6 61 67.2
arahy.Tifrunner.gnm1.ann1.D5QS8R Arachis hypogaea HOM05D000487 ORTHO05D000389 2.4e-06 58.5 30 76.7


User provided reference genes

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