Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G121300 Phaseolus vulgaris HOM05D006577 ORTHO05D008428 0.0e+00 1075.8 641 100.0
VMungo1215G3406 Vigna mungo HOM05D006577 ORTHO05D008428 1.1e-257 893.3 642 88.0
Glyma.11G090300 Glycine max HOM05D006577 ORTHO05D008428 2.1e-208 729.6 678 65.5
Glyma.01G154300 Glycine max HOM05D006577 ORTHO05D008428 8.7e-202 707.6 649 71.6
arahy.Tifrunner.gnm1.ann1.0U4NMV Arachis hypogaea HOM05D006577 ORTHO05D008428 5.5e-164 582.0 657 60.6
arahy.Tifrunner.gnm1.ann1.Y0J304 Arachis hypogaea HOM05D006577 ORTHO05D008428 5.5e-164 582.0 657 60.6
Ca_13135_v3 Cicer arietinum L. HOM05D006577 ORTHO05D008428 3.3e-161 572.8 651 61.8
Lalb_Chr16g0380351 Lupinus albus HOM05D006577 ORTHO05D008428 1.0e-154 551.2 625 62.6
Lj2g0006155 Lotus japonicus HOM05D006577 ORTHO05D008428 5.7e-153 545.4 651 61.1
Medtr2g040410 Medicago truncatula HOM05D006577 ORTHO05D008428 7.5e-153 545.0 605 56.9
Psat1g131640 Pisum sativum HOM05D006577 ORTHO05D008428 1.7e-152 543.9 592 64.2
TPR.G29075 Trifolium pratense HOM05D006577 ORTHO05D008428 2.3e-141 506.9 314 81.8
CiPaw.11G075200 Carya illinoinensis HOM05D006577 ORTHO05D008428 6.6e-141 505.4 317 79.8
Cpa.g.sc90.36 Carica papaya HOM05D006577 ORTHO05D008428 1.0e-138 498.0 427 65.8
Manes.17G000100 Manihot esculenta HOM05D006577 ORTHO05D008428 4.0e-138 496.1 397 68.5
Cfa012291 Carpinus fangiana HOM05D000435 ORTHO05D000430 6.8e-138 495.4 311 80.4
GSVIVG01036870001 Vitis vinifera HOM05D006577 ORTHO05D008428 1.2e-137 494.6 317 79.8
Prupe.1G353400 Prunus persica HOM05D006577 ORTHO05D008428 9.8e-137 491.5 400 66.5
COL.COLO4_11282 Corchorus olitorius HOM05D006577 ORTHO05D008428 1.9e-135 487.3 314 76.8
Eucgr.D02560 Eucalyptus grandis HOM05D006577 ORTHO05D008428 3.2e-135 486.5 318 76.4
Thecc.03G318900 Theobroma cacao HOM05D006577 ORTHO05D008428 3.2e-135 486.5 317 77.6
PGR042G0863 Punica granatum HOM05D006577 ORTHO05D008428 4.1e-135 486.1 318 76.4
Gohir.D08G170500 Gossypium hirsutum HOM05D006577 ORTHO05D008428 2.7e-134 483.4 320 76.6
Dinv41806 Davidia involucrata HOM05D006577 ORTHO05D008428 3.5e-134 483.0 318 77.4
Gohir.A08G149500 Gossypium hirsutum HOM05D006577 ORTHO05D008428 3.5e-134 483.0 320 76.6
Haze_08434 Corylus avellana HOM05D006577 ORTHO05D008428 7.8e-134 481.9 333 74.8
FvH4_2g37380 Fragaria vesca HOM05D006577 ORTHO05D008428 7.8e-134 481.9 429 64.6
Gorai.004G178000 Gossypium raimondii HOM05D006577 ORTHO05D008428 7.8e-134 481.9 320 76.2
Actinidia32789 Actinidia chinensis HOM05D006577 ORTHO05D008428 1.3e-133 481.1 314 76.1
Oeu046783.1 Olea europaea HOM05D006577 ORTHO05D008428 1.1e-132 478.0 312 76.6
MD08G1001400 Malus domestica HOM05D006577 ORTHO05D008428 3.3e-132 476.5 402 67.2
vmacro00091 Vaccinium macrocarpon HOM05D006577 ORTHO05D008428 1.2e-131 474.6 314 77.1
Ciclev10011516m.g Citrus clementina HOM05D006577 ORTHO05D008428 1.6e-131 474.2 309 77.0
TAR629G1131 Trochodendron aralioides HOM05D006577 ORTHO05D008428 2.1e-131 473.8 314 77.1
Nn7g37388 Nelumbo nucifera HOM05D006577 ORTHO05D008428 2.8e-131 473.4 307 77.2
Rhsim11G0036700 Rhododendron simsii HOM05D006577 ORTHO05D008428 2.8e-131 473.4 316 75.9
CSS0014058 Camellia sinensis var. sinensis HOM05D006577 ORTHO05D008428 3.6e-131 473.0 313 75.1
CANSAT35G0698 Cannabis sativa HOM05D006577 ORTHO05D008428 6.2e-131 472.2 431 67.1
CsaV3_4G027910 Cucumis sativus L. HOM05D006577 ORTHO05D008428 6.2e-131 472.2 389 66.1
TWI73G0063 Tripterygium wilfordii HOM05D006577 ORTHO05D008428 6.2e-131 472.2 418 62.9
RcHm_v2.0_Chr6g0304321 Rosa chinensis HOM05D006577 ORTHO05D008428 8.0e-131 471.9 417 68.3
Peaxi162Scf00193g00730 Petunia axillaris HOM05D006577 ORTHO05D008428 1.1e-130 471.5 309 74.8
Aqoxy7G00896 Aquilegia oxysepala HOM05D006577 ORTHO05D008428 1.4e-130 471.1 308 76.3
CDE01G0285 Ceratophyllum demersum HOM05D006577 ORTHO05D008428 8.9e-130 468.4 318 75.8
Cc08_g05650 Coffea canephora HOM05D006577 ORTHO05D008428 1.2e-129 468.0 313 76.7
Atru.chr8.2629 Acer truncatum HOM05D006577 ORTHO05D008428 1.5e-129 467.6 315 74.9
CDE12G0431 Ceratophyllum demersum HOM05D006577 ORTHO05D008428 1.5e-129 467.6 318 76.1
Potri.004G236300 Populus trichocarpa HOM05D006577 ORTHO05D008428 2.0e-129 467.2 319 74.6
MELO3C010522.2 Cucumis melo HOM05D006577 ORTHO05D008428 4.4e-129 466.1 389 72.8
ECA233G0973 Erigeron canadensis HOM05D006577 ORTHO05D008428 1.1e-127 461.5 317 71.9
SEGI_36653 Sequoiadendron giganteum HOM05D006577 ORTHO05D008428 1.1e-127 461.5 316 73.7
Aa31LG6G1900 Aethionema arabicum HOM05D006577 ORTHO05D008428 4.1e-127 459.5 316 73.4
Sopen08g024050 Solanum pennellii HOM05D006577 ORTHO05D008428 4.1e-127 459.5 307 73.0
CAN.G1026.7 Capsicum annuum HOM05D006577 ORTHO05D008428 2.1e-126 457.2 311 73.3
MSTRG.1757 Avicennia marina HOM05D006577 ORTHO05D008428 3.5e-126 456.4 303 75.9
Nitab4.5_0007095g0010 Nicotiana tabacum HOM05D006577 ORTHO05D008428 1.3e-125 454.5 310 72.6
Sp7g17900 Schrenkiella parvula HOM05D006577 ORTHO05D008428 2.3e-125 453.8 319 72.7
Lsat_1_v5_gn_6_17281 Lactuca sativa HOM05D006577 ORTHO05D008428 5.1e-125 452.6 311 72.7
Oeu015543.2 Olea europaea HOM05D006577 ORTHO05D008428 5.1e-125 452.6 444 57.7
Solyc08g075420.4 Solanum lycopersicum HOM05D006577 ORTHO05D008428 6.6e-125 452.2 307 72.6
AT4G19190 Arabidopsis thaliana HOM05D006577 ORTHO05D008428 1.5e-124 451.1 319 72.7
Migut.E01373 Erythranthe guttata HOM05D006577 ORTHO05D008428 1.9e-124 450.7 310 74.2
FAN20G0322 Fragaria x ananassa HOM05D006577 ORTHO05D008428 4.3e-124 449.5 434 62.4
FAN21G2299 Fragaria x ananassa HOM05D006577 ORTHO05D008428 5.6e-124 449.1 427 61.6
BolC1t01294H Brassica oleracea HOM05D006577 ORTHO05D008428 1.2e-123 448.0 314 72.0
Thhalv10024821m.g Eutrema salsugineum HOM05D006577 ORTHO05D008428 1.2e-123 448.0 314 72.6
Carub.0007s2195 Capsella rubella HOM05D006577 ORTHO05D008428 2.1e-123 447.2 319 72.4
AUR62030109 Chenopodium quinoa HOM05D006577 ORTHO05D008428 2.8e-123 446.8 314 72.3
AL7G34890 Arabidopsis lyrata HOM05D006577 ORTHO05D008428 3.6e-123 446.4 320 72.5
EL10Ac8g19602 Beta vulgaris HOM05D006577 ORTHO05D008428 6.2e-123 445.7 315 72.7
C01p13200 Brassica napus HOM05D006577 ORTHO05D008428 6.2e-123 445.7 316 71.8
DCAR_030906 Daucus carota HOM05D006577 ORTHO05D008428 1.1e-122 444.9 312 69.9
FAN27G1697 Fragaria x ananassa HOM05D006577 ORTHO05D008428 1.8e-122 444.1 467 58.2
ClCG11G016060 Citrullus lanatus HOM05D006577 ORTHO05D008428 2.3e-122 443.7 336 69.6
HanXRQChr07g0198411 Helianthus annuus HOM05D006577 ORTHO05D008428 6.8e-122 442.2 303 72.9
ATR0568G043 Amborella trichopoda HOM05D006577 ORTHO05D008428 2.9e-120 436.8 336 69.0
Sabra01G0180600 Salix brachista HOM05D006577 ORTHO05D008428 3.7e-120 436.4 388 61.6
A01p11160 Brassica napus HOM05D006577 ORTHO05D008428 1.1e-119 434.9 423 64.3
BraA01t01062Z Brassica rapa HOM05D006577 ORTHO05D008428 1.1e-119 434.9 423 63.1
CARHR226070 Cardamine hirsuta HOM05D006577 ORTHO05D008428 9.2e-119 431.8 319 70.2
THA.LOC104806196 Tarenaya hassleriana HOM05D006577 ORTHO05D008428 1.3e-117 427.9 320 70.3
HPP92_002488 Vanilla planifolia HOM05D006577 ORTHO05D008428 1.3e-117 427.9 398 59.8
PSO502G0007 Papaver somniferum HOM05D006577 ORTHO05D008428 3.9e-117 426.4 316 69.3
PSO675G5955 Papaver somniferum HOM05D006577 ORTHO05D008428 5.1e-117 426.0 307 70.7
unitig_37.g12910 Utricularia gibba HOM05D006577 ORTHO05D008428 1.6e-115 421.0 312 67.6
BcaC09g51429 Brassica carinata HOM05D006577 ORTHO05D008428 1.4e-114 417.9 317 68.8
QL12p004173 Quercus lobata HOM05D006577 ORTHO05D008428 6.2e-107 392.5 628 41.9
Mapoly0190s0006 Marchantia polymorpha HOM05D006577 ORTHO05D008428 3.4e-105 386.7 310 63.9
Pp3c3_31660 Physcomitrium patens HOM05D006577 ORTHO05D008428 6.4e-104 382.5 313 62.3
BcaC09g51430 Brassica carinata HOM05D006577 ORTHO05D008428 8.7e-101 372.1 264 72.0
SMO172G0042 Selaginella moellendorffii HOM05D006577 ORTHO05D008428 1.2e-97 361.7 401 54.1
SGA_v2.0_scaffold144G35886 Striga asiatica HOM05D006577 ORTHO05D008428 1.7e-96 357.8 273 68.5
Lj3A8G25 Lonicera japonica HOM05D006577 ORTHO05D008428 8.4e-96 355.5 256 71.1
Sc24g0001520 Simmondsia chinensis HOM05D006577 ORTHO05D008428 3.0e-93 347.1 230 77.0
CBR_g50314 Chara braunii HOM05D006577 ORTHO05D008428 2.5e-87 327.4 286 60.1
Zm00001eb227500 Zea mays HOM05D006577 ORTHO05D008428 3.3e-84 317.0 221 71.9
Sed0006082 Sechium edule HOM05D006577 ORTHO05D008428 9.3e-79 298.9 324 58.6
Ah.09g232390 Amaranthus hybridus HOM05D006577 ORTHO05D008428 1.4e-69 268.5 310 53.2
Lj3A28G25 Lonicera japonica HOM05D006577 ORTHO05D008428 5.0e-64 250.0 187 69.5
Hund17694 Selenicereus undatus HOM05D006577 ORTHO05D008428 2.1e-62 244.6 182 71.4
Hund17692 Selenicereus undatus HOM05D006577 ORTHO05D008428 2.6e-57 227.6 143 76.2
Lj9P453T24 Lonicera japonica HOM05D006577 ORTHO05D008428 7.2e-47 193.0 151 64.2
HanXRQChr07g0198421 Helianthus annuus HOM05D006577 ORTHO05D008428 1.5e-44 185.3 175 57.1
MCO15G109 Micromonas commoda HOM05D006577 ORTHO05D008428 3.1e-42 177.6 314 36.3
VMungo0251G3731 Vigna mungo HOM05D006577 ORTHO05D008428 1.6e-30 138.7 86 82.6
Zm00001eb395460 Zea mays HOM05D006577 ORTHO05D008428 1.6e-30 138.7 111 69.4
Os06g0708900 Oryza sativa ssp. japonica HOM05D006577 ORTHO05D008428 2.1e-30 138.3 86 79.1
Zm00001eb339160 Zea mays HOM05D006577 ORTHO05D008428 1.8e-29 135.2 87 79.3
TPR.G30154 Trifolium pratense HOM05D006577 ORTHO05D008428 4.0e-29 134.0 189 47.6
CARHR123800 Cardamine hirsuta HOM05D006577 ORTHO05D008428 4.9e-27 127.1 69 81.2
MD15G1000700 Malus domestica HOM05D006577 ORTHO05D008428 1.8e-21 108.6 118 56.8
FAN21G2282 Fragaria x ananassa HOM05D006577 ORTHO05D011051 4.4e-20 104.0 177 42.9
Nitab4.5_0000030g0480 Nicotiana tabacum HOM05D006577 ORTHO05D008428 4.4e-20 104.0 59 76.3
FAN21G2462 Fragaria x ananassa HOM05D006577 ORTHO05D011051 2.2e-19 101.7 177 42.4
FAN21G2626 Fragaria x ananassa HOM05D006577 ORTHO05D011051 9.2e-18 96.3 177 41.2
Lj3C28T3 Lonicera japonica HOM05D006577 ORTHO05D008428 4.6e-17 94.0 51 88.2
AUR62042461 Chenopodium quinoa HOM05D006577 ORTHO05D008428 1.7e-16 92.0 64 71.9
Lj3A8T28 Lonicera japonica HOM05D006577 ORTHO05D008428 3.9e-16 90.9 51 86.3
TPR.G13376 Trifolium pratense HOM05D006577 ORTHO05D008428 2.1e-14 85.1 67 68.7
Cre06.g280700 Chlamydomonas reinhardtii HOM05D006577 ORTHO05D008428 1.1e-13 82.8 119 38.7
FvH4_3g03932 Fragaria vesca HOM05D006577 ORTHO05D008428 8.9e-13 79.7 39 92.3
BcaB08g35318 Brassica carinata HOM05D006577 ORTHO05D008428 7.5e-12 76.6 45 73.3


User provided reference genes

Program Settings