Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G117000 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 2.7e-198 695.3 380 100.0
VMungo1215G0928 Vigna mungo HOM05D004420 ORTHO05D005048 6.0e-166 587.8 381 86.6
Glyma.01G158300 Glycine max HOM05D004420 ORTHO05D005048 1.3e-149 533.5 383 81.2
Glyma.11G086400 Glycine max HOM05D004420 ORTHO05D005048 2.2e-136 489.6 383 75.5
arahy.Tifrunner.gnm1.ann1.7Y7MXI Arachis hypogaea HOM05D004420 ORTHO05D005048 1.4e-130 470.3 382 71.7
arahy.Tifrunner.gnm1.ann1.PTZ9GF Arachis hypogaea HOM05D004420 ORTHO05D005048 1.4e-130 470.3 382 71.7
Lalb_Chr05g0214821 Lupinus albus HOM05D004420 ORTHO05D005048 2.4e-122 443.0 382 70.2
Phvul.003G270300 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 4.0e-122 442.2 381 67.7
VMungo0251G1478 Vigna mungo HOM05D004420 ORTHO05D005048 1.1e-119 434.1 381 67.7
Ca_02853_v3 Cicer arietinum L. HOM05D004420 ORTHO05D005048 8.7e-117 424.5 382 66.0
Psat4g103680 Pisum sativum HOM05D004420 ORTHO05D005048 1.1e-114 417.5 387 64.1
Medtr8g073305 Medicago truncatula HOM05D004420 ORTHO05D005048 2.4e-114 416.4 384 64.6
Glyma.09G197900 Glycine max HOM05D004420 ORTHO05D005048 8.5e-112 407.9 359 69.9
TPR.G13730 Trifolium pratense HOM05D004420 ORTHO05D005048 1.4e-111 407.1 385 64.2
Lalb_Chr09g0324761 Lupinus albus HOM05D004420 ORTHO05D005048 4.2e-111 405.6 380 67.1
Glyma.16G111400 Glycine max HOM05D004420 ORTHO05D005048 3.3e-108 396.0 359 66.3
Lj2g0010108 Lotus japonicus HOM05D004420 ORTHO05D005048 1.0e-104 384.4 384 62.5
Lalb_Chr09g0334351 Lupinus albus HOM05D004420 ORTHO05D005048 1.0e-101 374.4 383 61.6
Prupe.7G183600 Prunus persica HOM05D004420 ORTHO05D005048 1.5e-97 360.5 380 57.4
Lj4g0016332 Lotus japonicus HOM05D004420 ORTHO05D005048 2.9e-96 356.3 380 59.7
CiPaw.08G182000 Carya illinoinensis HOM05D004420 ORTHO05D005048 1.9e-95 353.6 379 58.6
Lalb_Chr16g0380091 Lupinus albus HOM05D004420 ORTHO05D005048 8.0e-94 348.2 381 60.4
FAN19G0089 Fragaria x ananassa HOM05D004420 ORTHO05D005048 1.4e-93 347.4 379 54.9
FvH4_1g10260 Fragaria vesca HOM05D004420 ORTHO05D005048 3.9e-93 345.9 379 54.6
FAN26G2737 Fragaria x ananassa HOM05D004420 ORTHO05D005048 1.5e-92 344.0 379 54.4
RcHm_v2.0_Chr2g0097081 Rosa chinensis HOM05D004420 ORTHO05D005048 2.0e-92 343.6 381 55.1
Cfa007085 Carpinus fangiana HOM05D004420 ORTHO05D005048 2.4e-90 336.7 396 54.5
Potri.007G063000 Populus trichocarpa HOM05D004420 ORTHO05D005048 1.0e-88 331.3 392 55.9
FAN23G0043 Fragaria x ananassa HOM05D004420 ORTHO05D005048 4.2e-87 325.9 379 52.2
Manes.01G155700 Manihot esculenta HOM05D004420 ORTHO05D005048 9.4e-87 324.7 399 52.1
Potri.005G102000 Populus trichocarpa HOM05D004420 ORTHO05D005048 1.2e-86 324.3 387 53.5
TWI09G0210 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 1.8e-85 320.5 379 52.8
MD02G1114600 Malus domestica HOM05D004420 ORTHO05D005048 2.3e-85 320.1 386 52.3
MD15G1230400 Malus domestica HOM05D004420 ORTHO05D005048 3.3e-84 316.2 384 52.6
Cpa.g.sc6.366 Carica papaya HOM05D004420 ORTHO05D005048 5.7e-84 315.5 379 51.2
Manes.02G114400 Manihot esculenta HOM05D004420 ORTHO05D005048 5.7e-84 315.5 396 51.5
Ciclev10025852m.g Citrus clementina HOM05D004420 ORTHO05D005048 7.5e-84 315.1 386 53.1
Duzib147G0341 Durio zibethinus HOM05D004420 ORTHO05D005048 9.7e-84 314.7 388 51.5
Thecc.01G004900 Theobroma cacao HOM05D004420 ORTHO05D005048 3.7e-83 312.8 384 52.3
Sabra05G0084400 Salix brachista HOM05D004420 ORTHO05D005048 3.5e-81 306.2 391 51.4
TWI53G1718 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 3.5e-81 306.2 358 53.9
QL06p053029 Quercus lobata HOM05D004420 ORTHO05D005048 1.3e-80 304.3 393 52.2
Dinv40192 Davidia involucrata HOM05D004420 ORTHO05D005048 1.7e-80 303.9 381 49.6
CANSAT25G3726 Cannabis sativa HOM05D004420 ORTHO05D005048 2.2e-80 303.5 390 54.9
CSS0016949 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 1.6e-78 297.4 383 49.9
CSS0044881 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 1.6e-78 297.4 383 49.9
CiPaw.07G002200 Carya illinoinensis HOM05D004420 ORTHO05D005048 2.0e-76 290.4 331 55.3
CsaV3_3G000180 Cucumis sativus L. HOM05D004420 ORTHO05D005048 2.2e-75 287.0 381 51.4
Duzib264G0151 Durio zibethinus HOM05D004420 ORTHO05D005048 2.8e-75 286.6 384 51.0
MELO3C013712.2 Cucumis melo HOM05D004420 ORTHO05D005048 6.3e-75 285.4 380 51.1
Actinidia17355 Actinidia chinensis HOM05D004420 ORTHO05D005048 7.0e-74 282.0 382 47.4
COL.COLO4_22555 Corchorus olitorius HOM05D004420 ORTHO05D005048 7.0e-74 282.0 354 52.5
Eucgr.I02220 Eucalyptus grandis HOM05D004420 ORTHO05D005048 1.3e-72 277.7 379 48.5
CSS0013805 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 2.9e-72 276.6 382 45.5
Gohir.A02G178300 Gossypium hirsutum HOM05D004420 ORTHO05D005048 6.6e-72 275.4 393 48.9
Gohir.D03G001500 Gossypium hirsutum HOM05D004420 ORTHO05D005048 1.5e-71 274.2 389 48.8
Actinidia22893 Actinidia chinensis HOM05D004420 ORTHO05D005048 9.5e-71 271.6 382 49.0
Atru.chr3.127 Acer truncatum HOM05D004420 ORTHO05D005048 1.2e-70 271.2 387 49.6
Dinv40193 Davidia involucrata HOM05D004420 ORTHO05D005048 1.6e-70 270.8 381 47.0
Gorai.003G001900 Gossypium raimondii HOM05D004420 ORTHO05D005048 3.6e-70 269.6 391 48.1
ClCG10G000160 Citrullus lanatus HOM05D004420 ORTHO05D005048 4.7e-70 269.2 393 47.6
Hma1.2p1_0300F.1_g117950 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 1.0e-69 268.1 383 45.4
Cc07_g11920 Coffea canephora HOM05D004420 ORTHO05D005048 7.0e-66 255.4 395 44.6
Rhsim10G0195100 Rhododendron simsii HOM05D004420 ORTHO05D005048 2.0e-65 253.8 379 44.1
Hma1.2p1_0085F.1_g044630 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 4.5e-65 252.7 383 44.9
Sed0027819 Sechium edule HOM05D004420 ORTHO05D005048 7.8e-65 251.9 383 46.2
Actinidia35683 Actinidia chinensis HOM05D004420 ORTHO05D005048 1.1e-63 248.1 382 44.2
Actinidia28747 Actinidia chinensis HOM05D004420 ORTHO05D005048 1.5e-63 247.7 377 45.9
Oeu045734.2 Olea europaea HOM05D004420 ORTHO05D005048 3.6e-62 243.0 395 43.5
Oeu043391.2 Olea europaea HOM05D004420 ORTHO05D005048 6.1e-62 242.3 397 41.8
vmacro20627 Vaccinium macrocarpon HOM05D004420 ORTHO05D005048 6.8e-61 238.8 366 42.1
PGR119G1834 Punica granatum HOM05D004420 ORTHO05D005048 8.9e-61 238.4 383 46.2
GSVIVG01022291001 Vitis vinifera HOM05D004420 ORTHO05D005048 2.0e-60 237.3 381 47.5
EL10Ac6g15050 Beta vulgaris HOM05D004420 ORTHO05D005048 1.7e-59 234.2 385 46.5
Ah.03g142860 Amaranthus hybridus HOM05D004420 ORTHO05D005048 3.7e-59 233.0 392 43.6
Lj2P500T27 Lonicera japonica HOM05D004420 ORTHO05D005048 1.9e-58 230.7 381 43.3
Ah.02g123000 Amaranthus hybridus HOM05D000464 ORTHO05D005048 4.1e-58 229.6 390 45.6
Gorai.001G199300 Gossypium raimondii HOM05D004420 ORTHO05D005048 6.0e-57 225.7 317 49.2
AUR62002052 Chenopodium quinoa HOM05D004420 ORTHO05D005048 7.8e-57 225.3 385 42.6
Gohir.D07G178200 Gossypium hirsutum HOM05D004420 ORTHO05D005048 3.0e-56 223.4 317 48.9
Gohir.A07G173800 Gossypium hirsutum HOM05D004420 ORTHO05D005048 7.3e-55 218.8 318 48.1
Nitab4.5_0004608g0040 Nicotiana tabacum HOM05D004420 ORTHO05D005048 1.6e-54 217.6 399 40.6
Aa31LG8G14840 Aethionema arabicum HOM05D004420 ORTHO05D005048 2.1e-54 217.2 385 43.6
CAN.G1238.15 Capsicum annuum HOM05D004420 ORTHO05D005048 3.6e-54 216.5 390 43.3
THA.LOC104819714 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 1.8e-53 214.2 388 40.5
AUR62003743 Chenopodium quinoa HOM05D004420 ORTHO05D005048 5.2e-53 212.6 281 49.5
Nitab4.5_0001467g0050 Nicotiana tabacum HOM05D004420 ORTHO05D005048 1.2e-52 211.5 394 40.9
PGSC0003DMG400001515 Solanum tuberosum HOM05D004420 ORTHO05D005048 8.3e-51 205.3 396 41.2
Sopen02g027250 Solanum pennellii HOM05D004420 ORTHO05D005048 1.4e-50 204.5 396 40.9
Migut.F01091 Erythranthe guttata HOM05D004420 ORTHO05D005048 1.9e-50 204.1 377 40.8
Sc07g0001390 Simmondsia chinensis HOM05D004420 ORTHO05D005048 4.1e-50 203.0 381 42.3
Lj4P237T30 Lonicera japonica HOM05D004420 ORTHO05D005048 7.0e-50 202.2 388 41.5
DCAR_014284 Daucus carota HOM05D004420 ORTHO05D005048 9.2e-50 201.8 377 38.5
DCAR_014308 Daucus carota HOM05D004420 ORTHO05D005048 9.2e-50 201.8 377 38.5
THA.LOC104807425 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 1.0e-48 198.4 388 41.2
TAR376G0940 Trochodendron aralioides HOM05D004420 ORTHO05D005048 1.9e-47 194.1 385 42.3
Peaxi162Scf00121g00249 Petunia axillaris HOM05D004420 ORTHO05D005048 2.5e-47 193.7 397 41.3
AL3G50510 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 1.1e-45 188.3 379 39.3
Sabra07G0052400 Salix brachista HOM05D004420 ORTHO05D005048 1.1e-45 188.3 334 42.5
SalBow2G0301 Salvia bowleyana HOM05D004420 ORTHO05D005048 3.1e-45 186.8 385 41.6
SalBow2G0742 Salvia bowleyana HOM05D004420 ORTHO05D005048 3.1e-45 186.8 385 41.6
TAR625G1485 Trochodendron aralioides HOM05D004420 ORTHO05D005048 1.2e-44 184.9 377 40.6
Carub.0003s3163 Capsella rubella HOM05D004420 ORTHO05D005048 2.0e-44 184.1 383 38.4
Carub.0007s0482 Capsella rubella HOM05D004420 ORTHO05D005048 1.3e-43 181.4 380 38.9
AT4G35510 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 1.7e-43 181.0 381 38.8
TAR381G0338 Trochodendron aralioides HOM05D004420 ORTHO05D005048 3.5e-41 173.3 334 42.8
CARHR243840 Cardamine hirsuta HOM05D004420 ORTHO05D005048 4.6e-41 172.9 379 39.6
Nn6g31686 Nelumbo nucifera HOM05D004420 ORTHO05D005048 2.3e-40 170.6 324 43.2
Aqoxy6G01610 Aquilegia oxysepala HOM05D004420 ORTHO05D005048 5.6e-39 166.0 381 37.3
AL7G15660 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 5.6e-39 166.0 381 37.5
Solyc03g032100.2 Solanum lycopersicum HOM05D004420 ORTHO05D005048 1.2e-38 164.9 318 39.9
Sopen03g005950 Solanum pennellii HOM05D004420 ORTHO05D005048 2.1e-38 164.1 318 39.3
SGA_v2.0_scaffold60G21098 Striga asiatica HOM05D004420 ORTHO05D005048 2.4e-37 160.6 310 41.9
Migut.F00308 Erythranthe guttata HOM05D004420 ORTHO05D005048 5.2e-37 159.5 384 38.0
Eucgr.J02539 Eucalyptus grandis HOM05D004420 ORTHO05D005048 1.7e-35 154.5 193 53.9
PSO210G4741 Papaver somniferum HOM05D004420 ORTHO05D005048 3.8e-35 153.3 351 38.7
PSO761G0558 Papaver somniferum HOM05D004420 ORTHO05D005048 4.9e-35 152.9 353 39.9
C07p05740 Brassica napus HOM05D004420 ORTHO05D005048 1.4e-34 151.4 333 41.1
unitig_46.g18801 Utricularia gibba HOM05D004420 ORTHO05D005048 1.4e-34 151.4 389 31.6
Sp3g30900 Schrenkiella parvula HOM05D004420 ORTHO05D005048 3.2e-34 150.2 340 39.1
BcaC06g36286 Brassica carinata HOM05D004420 ORTHO05D005048 4.2e-34 149.8 333 41.1
SGA_v2.0_scaffold10G05298 Striga asiatica HOM05D004420 ORTHO05D005048 4.2e-34 149.8 366 38.5
CiPaw.13G121300 Carya illinoinensis HOM05D004420 ORTHO05D005048 7.1e-34 149.1 167 65.3
PGSC0003DMG400018682 Solanum tuberosum HOM05D004420 ORTHO05D005048 1.2e-33 148.3 318 36.8
Sp7g33290 Schrenkiella parvula HOM05D004420 ORTHO05D005048 7.8e-33 145.6 370 34.3
Thhalv10025668m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 1.0e-32 145.2 384 35.7
CAN.G354.13 Capsicum annuum HOM05D004420 ORTHO05D005048 2.3e-32 144.1 330 36.7
HanXRQChr16g0531911 Helianthus annuus HOM05D004420 ORTHO05D005048 2.3e-32 144.1 380 35.3
ECA246G3765 Erigeron canadensis HOM05D004420 ORTHO05D005048 3.0e-32 143.7 383 34.5
BcaB03g16523 Brassica carinata HOM05D004420 ORTHO05D005048 3.9e-32 143.3 329 37.1
HanXRQChr16g0531901 Helianthus annuus HOM05D004420 ORTHO05D005048 4.3e-31 139.8 379 34.8
Thhalv10022789m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 3.6e-30 136.7 337 38.3
BolC3t18106H Brassica oleracea HOM05D004420 ORTHO05D005048 2.4e-29 134.0 331 37.8
BcaB08g34743 Brassica carinata HOM05D004420 ORTHO05D005048 5.8e-28 129.4 313 38.3
A06p33900 Brassica napus HOM05D004420 ORTHO05D005048 2.2e-27 127.5 308 38.6
MBI08_g12255_MAGBIO Magnolia biondii HOM05D004420 ORTHO05D005048 2.9e-27 127.1 365 34.2
BraA06t26325Z Brassica rapa HOM05D004420 ORTHO05D005048 3.8e-27 126.7 308 38.3
Peaxi162Scf00580g00013 Petunia axillaris HOM05D004420 ORTHO05D005048 2.4e-26 124.0 225 39.1
Lsat_1_v5_gn_8_112420 Lactuca sativa HOM05D004420 ORTHO05D005048 7.1e-26 122.5 377 31.8
CDE05G3647 Ceratophyllum demersum HOM05D004420 ORTHO05D005048 3.9e-24 116.7 372 30.1
BcaC01g02911 Brassica carinata HOM05D004420 ORTHO05D005048 5.1e-24 116.3 331 35.3
C03p58480 Brassica napus HOM05D004420 ORTHO05D005048 5.1e-24 116.3 331 35.3
unitig_52.g17736 Utricularia gibba HOM05D004420 ORTHO05D005048 1.6e-22 111.3 203 44.3
BcaNung03633 Brassica carinata HOM05D004420 ORTHO05D005048 1.4e-21 108.2 302 35.1
BraA07t28141Z Brassica rapa HOM05D004420 ORTHO05D005048 6.9e-21 105.9 333 36.0
Solyc02g082570.3 Solanum lycopersicum HOM05D004420 ORTHO05D005048 2.0e-20 104.4 159 50.3
A01p03090 Brassica napus HOM05D004420 ORTHO05D005048 3.4e-20 103.6 306 35.3
BolC7t40973H Brassica oleracea HOM05D004420 ORTHO05D005048 3.4e-20 103.6 333 35.1
BraA01t00293Z Brassica rapa HOM05D004420 ORTHO05D005048 2.9e-19 100.5 306 34.3
CDE05G1602 Ceratophyllum demersum HOM05D001617 ORTHO05D008611 1.3e-16 91.7 239 34.3
Lsat_1_v5_gn_3_67941 Lactuca sativa HOM05D004420 ORTHO05D005048 1.8e-16 91.3 228 38.6
BolC1t00331H Brassica oleracea HOM05D004420 ORTHO05D005048 6.7e-16 89.4 207 38.2
AT2G17540 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 9.6e-15 85.5 373 30.0
CARHR107720 Cardamine hirsuta HOM05D004420 ORTHO05D005048 4.5e-12 76.6 377 28.4
THA.LOC104804296 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 5.8e-12 76.3 122 43.4
BcaNung00585 Brassica carinata HOM05D004420 ORTHO05D005048 2.9e-11 73.9 206 36.4
C01p03440 Brassica napus HOM05D004420 ORTHO05D005048 2.9e-11 73.9 206 36.4
BolC7t46546H Brassica oleracea HOM05D004420 ORTHO05D005048 4.2e-10 70.1 325 30.2
C07p61200 Brassica napus HOM05D004420 ORTHO05D005048 1.2e-09 68.6 325 30.2
BraA03t15434Z Brassica rapa HOM05D004420 ORTHO05D005048 2.7e-09 67.4 375 29.1
Thhalv10022985m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 6.0e-09 66.2 136 41.2
A03p63630 Brassica napus HOM05D004420 ORTHO05D005048 3.0e-08 63.9 308 30.8


User provided reference genes

Program Settings