Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G116800 Phaseolus vulgaris HOM05D001617 ORTHO05D008611 2.6e-98 362.1 184 100.0
Glyma.01G158500 Glycine max HOM05D001617 ORTHO05D008611 2.8e-84 315.5 184 84.8
Glyma.11G086100 Glycine max HOM05D001617 ORTHO05D008611 4.0e-83 311.6 184 85.9
TPR.G24692 Trifolium pratense HOM05D001617 ORTHO05D008611 2.7e-79 298.9 184 80.4
Ca_24984_v3 Cicer arietinum L. HOM05D001617 ORTHO05D008611 1.3e-78 296.6 184 78.8
Psat4g142640 Pisum sativum HOM05D001617 ORTHO05D008611 1.7e-78 296.2 184 79.9
Lalb_Chr05g0214811 Lupinus albus HOM05D001617 ORTHO05D008611 1.9e-77 292.7 184 79.3
TPR.G27884 Trifolium pratense HOM05D001617 ORTHO05D008611 1.1e-75 287.0 184 76.6
Lj2g0016890 Lotus japonicus HOM05D001617 ORTHO05D008611 5.8e-74 281.2 182 79.1
Lalb_Chr16g0380051 Lupinus albus HOM05D001617 ORTHO05D008611 6.4e-73 277.7 184 75.0
Medtr7g006210 Medicago truncatula HOM05D001617 ORTHO05D008611 3.5e-71 271.9 177 75.7
arahy.Tifrunner.gnm1.ann1.00REGV Arachis hypogaea HOM05D001617 ORTHO05D008611 5.1e-70 268.1 177 75.7
arahy.Tifrunner.gnm1.ann1.P3NXZX Arachis hypogaea HOM05D001617 ORTHO05D008611 5.1e-70 268.1 177 75.7
VMungo1215G1547 Vigna mungo HOM05D004017 ORTHO05D004612 2.7e-63 245.7 125 96.0
Haze_03607 Corylus avellana HOM05D001617 ORTHO05D008611 1.3e-60 236.9 174 64.4
Prupe.7G183400 Prunus persica HOM05D001617 ORTHO05D008611 3.4e-58 228.8 171 66.7
MD02G1114800 Malus domestica HOM05D001617 ORTHO05D008611 1.3e-57 226.9 183 61.7
MD15G1230700 Malus domestica HOM05D001617 ORTHO05D008611 1.7e-57 226.5 177 64.4
Potri.018G026700 Populus trichocarpa HOM05D001617 ORTHO05D008611 1.7e-57 226.5 176 59.7
Medtr8g446540 Medicago truncatula HOM05D001617 ORTHO05D008611 3.2e-56 222.2 152 72.4
FAN19G1097 Fragaria x ananassa HOM05D001617 ORTHO05D002495 9.3e-56 220.7 181 61.9
FvH4_1g10271 Fragaria vesca HOM05D001617 ORTHO05D008611 1.6e-55 219.9 181 61.9
QL06p053003 Quercus lobata HOM05D001617 ORTHO05D008611 2.7e-55 219.2 176 61.4
RcHm_v2.0_Chr2g0097101 Rosa chinensis HOM05D001617 ORTHO05D008611 4.6e-55 218.4 181 61.9
Lj2g0001157 Lotus japonicus HOM05D001617 ORTHO05D008611 1.1e-51 207.2 182 62.6
CiPaw.08G181900 Carya illinoinensis HOM05D001617 ORTHO05D008611 3.1e-51 205.7 175 60.6
Manes.03G014200 Manihot esculenta HOM05D001617 ORTHO05D008611 4.0e-51 205.3 178 55.6
Eucgr.I02221 Eucalyptus grandis HOM05D001617 ORTHO05D008611 5.3e-51 204.9 173 58.4
Nn5g30995 Nelumbo nucifera HOM05D001617 ORTHO05D008611 2.0e-50 203.0 179 58.7
Dinv40191 Davidia involucrata HOM05D001617 ORTHO05D008611 4.5e-50 201.8 177 57.1
Sabra06G0199600 Salix brachista HOM05D001617 ORTHO05D008611 4.5e-50 201.8 177 53.7
TAR625G0652 Trochodendron aralioides HOM05D001617 ORTHO05D008611 3.8e-49 198.7 179 58.7
Atru.chr3.130 Acer truncatum HOM05D001617 ORTHO05D008611 6.4e-49 198.0 176 52.8
FAN23G1150 Fragaria x ananassa HOM05D001617 ORTHO05D002495 6.4e-49 198.0 217 51.2
CSS0049801 Camellia sinensis var. sinensis HOM05D001617 ORTHO05D008611 1.1e-48 197.2 171 55.6
Ciclev10026581m.g Citrus clementina HOM05D001617 ORTHO05D008611 5.4e-48 194.9 171 53.2
Actinidia17356 Actinidia chinensis HOM05D001617 ORTHO05D008611 7.1e-48 194.5 167 58.7
CSS0040657 Camellia sinensis var. sinensis HOM05D001617 ORTHO05D008611 1.2e-47 193.7 171 55.6
HanXRQChr03g0061381 Helianthus annuus HOM05D001617 ORTHO05D008611 2.7e-47 192.6 171 56.7
Actinidia22895 Actinidia chinensis HOM05D001617 ORTHO05D008611 4.6e-47 191.8 172 55.2
Sc07g0001380 Simmondsia chinensis HOM05D001617 ORTHO05D008611 7.9e-47 191.0 173 56.1
Duzib147G0359 Durio zibethinus HOM05D001617 ORTHO05D008611 1.8e-46 189.9 185 53.0
Sed0024019 Sechium edule HOM05D001617 ORTHO05D008611 1.8e-46 189.9 174 55.7
Thecc.01G005100 Theobroma cacao HOM05D001617 ORTHO05D008611 3.0e-46 189.1 182 53.8
Hma1.2p1_0300F.1_g117970 Hydrangea macrophylla HOM05D001617 ORTHO05D008611 3.9e-46 188.7 175 56.0
CsaV3_3G000210 Cucumis sativus L. HOM05D001617 ORTHO05D008611 6.2e-44 181.4 174 52.9
PSO210G2591 Papaver somniferum HOM05D001617 ORTHO05D008611 8.1e-44 181.0 173 56.6
Potri.006G255301 Populus trichocarpa HOM05D001617 ORTHO05D008611 1.1e-43 180.6 177 50.3
Rhsim10G0195300 Rhododendron simsii HOM05D001617 ORTHO05D008611 1.1e-43 180.6 177 53.7
Solyc02g038814.1 Solanum lycopersicum HOM05D001617 ORTHO05D008611 4.0e-43 178.7 163 57.7
Sopen02g012580 Solanum pennellii HOM05D001617 ORTHO05D008611 4.0e-43 178.7 163 57.7
Lsat_1_v5_gn_7_41980 Lactuca sativa HOM05D001617 ORTHO05D008611 5.3e-43 178.3 181 51.4
Aqoxy6G01611 Aquilegia oxysepala HOM05D001617 ORTHO05D008611 1.2e-42 177.2 168 53.0
Carub.0007s0479 Capsella rubella HOM05D001617 ORTHO05D008611 2.6e-42 176.0 195 48.7
AL7G15630 Arabidopsis lyrata HOM05D001617 ORTHO05D008611 3.4e-42 175.6 196 48.0
AT4G35530 Arabidopsis thaliana HOM05D001617 ORTHO05D008611 3.4e-42 175.6 190 48.9
ECA240G2496 Erigeron canadensis HOM05D001617 ORTHO05D008611 3.4e-42 175.6 178 48.9
Thhalv10026286m.g Eutrema salsugineum HOM05D001617 ORTHO05D008611 4.5e-42 175.3 181 51.4
TWI09G0535 Tripterygium wilfordii HOM05D001617 ORTHO05D008611 4.5e-42 175.3 165 52.1
Nitab4.5_0001365g0060 Nicotiana tabacum HOM05D001617 ORTHO05D008611 3.8e-41 172.2 173 54.9
PSO761G0409 Papaver somniferum HOM05D001617 ORTHO05D008611 4.9e-41 171.8 182 51.1
AUR62003746 Chenopodium quinoa HOM05D001617 ORTHO05D008611 1.1e-40 170.6 177 46.9
GSVIVG01013391001 Vitis vinifera HOM05D001617 ORTHO05D008611 2.5e-40 169.5 177 50.3
C07p61220 Brassica napus HOM05D001617 ORTHO05D008611 4.2e-40 168.7 181 49.7
BolC7t46548H Brassica oleracea HOM05D001617 ORTHO05D008611 4.2e-40 168.7 181 49.7
Migut.H02499 Erythranthe guttata HOM05D001617 ORTHO05D008611 5.5e-40 168.3 183 50.3
A01p03080 Brassica napus HOM05D001617 ORTHO05D008611 9.3e-40 167.5 181 46.4
THA.LOC104819716 Tarenaya hassleriana HOM05D001617 ORTHO05D008611 1.6e-39 166.8 180 48.3
Aa31LG6G12490 Aethionema arabicum HOM05D001617 ORTHO05D008611 2.1e-39 166.4 179 46.9
BraA01t00292Z Brassica rapa HOM05D001617 ORTHO05D008611 2.7e-39 166.0 181 45.9
Sp7g33310 Schrenkiella parvula HOM05D001617 ORTHO05D008611 2.7e-39 166.0 185 47.6
AUR62002049 Chenopodium quinoa HOM05D001617 ORTHO05D008611 4.6e-39 165.2 177 46.3
Peaxi162Scf00580g00110 Petunia axillaris HOM05D001617 ORTHO05D008611 4.6e-39 165.2 175 52.0
Nitab4.5_0000467g0050 Nicotiana tabacum HOM05D001617 ORTHO05D008611 7.9e-39 164.5 190 50.0
PGR119G0287 Punica granatum HOM05D001617 ORTHO05D008611 1.3e-38 163.7 174 48.3
HPP92_001135 Vanilla planifolia HOM05D001617 ORTHO05D008611 5.1e-38 161.8 177 46.9
ATR0807G073 Amborella trichopoda HOM05D001617 ORTHO05D008611 8.7e-38 161.0 179 46.9
Gohir.A02G178000 Gossypium hirsutum HOM05D001617 ORTHO05D008611 8.7e-38 161.0 182 47.3
SGA_v2.0_scaffold280G46856 Striga asiatica HOM05D001617 ORTHO05D008611 2.5e-37 159.5 186 48.9
A03p63650 Brassica napus HOM05D001617 ORTHO05D008611 4.3e-37 158.7 178 46.6
BraA03t15436Z Brassica rapa HOM05D001617 ORTHO05D008611 4.3e-37 158.7 178 46.6
Gorai.003G002100 Gossypium raimondii HOM05D001617 ORTHO05D008611 9.6e-37 157.5 182 48.4
PGSC0003DMG400017488 Solanum tuberosum HOM05D001617 ORTHO05D008611 9.6e-37 157.5 185 51.4
Gohir.D03G001800 Gossypium hirsutum HOM05D001617 ORTHO05D008611 1.6e-36 156.8 182 47.3
BcaNung03634 Brassica carinata HOM05D001617 ORTHO05D008611 1.1e-35 154.1 176 45.5
TWI73G0916 Tripterygium wilfordii HOM05D001617 ORTHO05D008611 1.8e-35 153.3 169 49.7
Cc07_g11900 Coffea canephora HOM05D001617 ORTHO05D008611 4.1e-35 152.1 172 48.8
CANSAT25G0226 Cannabis sativa HOM05D001617 ORTHO05D008611 6.9e-35 151.4 185 48.1
Os05g0165400 Oryza sativa ssp. japonica HOM05D001617 ORTHO05D008611 9.0e-35 151.0 168 50.6
ClCG10G000190 Citrullus lanatus HOM05D001617 ORTHO05D008611 2.9e-33 146.0 190 43.7
MELO3C013716.2 Cucumis melo HOM05D001617 ORTHO05D008611 5.0e-33 145.2 86 75.6
CARHR243860 Cardamine hirsuta HOM05D001617 ORTHO05D008611 1.9e-32 143.3 102 62.7
SalBow8G0576 Salvia bowleyana HOM05D001617 ORTHO05D008611 5.5e-32 141.7 158 50.0
Manes.03G014750 Manihot esculenta HOM05D001617 ORTHO05D008611 2.1e-31 139.8 176 45.5
Hund03599 Selenicereus undatus HOM05D001617 ORTHO05D008611 2.1e-31 139.8 179 46.4
QL02p015100 Quercus lobata HOM05D001617 ORTHO05D008611 3.5e-31 139.0 162 45.7
Zm00001eb123330 Zea mays HOM05D001617 ORTHO05D008611 1.0e-30 137.5 172 44.8
COL.COLO4_22553 Corchorus olitorius HOM05D001617 ORTHO05D008611 5.1e-30 135.2 183 41.5
BcaNung00584 Brassica carinata HOM05D001617 ORTHO05D008611 2.8e-28 129.4 178 44.4
FAN26G0309 Fragaria x ananassa HOM05D001617 ORTHO05D002495 4.8e-28 128.6 84 72.6
CDE05G1602 Ceratophyllum demersum HOM05D001617 ORTHO05D008611 1.4e-27 127.1 147 46.9
Haze_22828 Corylus avellana HOM05D006218 ORTHO05D007338 1.8e-27 126.7 91 64.8
SEGI_30027 Sequoiadendron giganteum HOM05D001617 ORTHO05D008611 7.7e-26 121.3 177 37.3
QL02p015033 Quercus lobata HOM05D001617 ORTHO05D008611 6.5e-25 118.2 161 42.2
EL10Ac6g15051 Beta vulgaris HOM05D001617 ORTHO05D008611 8.5e-25 117.9 221 34.8
C01p03430 Brassica napus HOM05D001617 ORTHO05D008611 9.4e-24 114.4 198 37.4
BolC1t00330H Brassica oleracea HOM05D001617 ORTHO05D008611 9.4e-24 114.4 198 37.4
SEGI_12529 Sequoiadendron giganteum HOM05D001617 ORTHO05D008611 5.1e-22 108.6 91 52.7
Medtr7g005770 Medicago truncatula HOM05D001617 ORTHO05D008611 4.8e-20 102.1 80 65.0
TAR381G0965 Trochodendron aralioides HOM05D001617 ORTHO05D008611 4.8e-20 102.1 71 66.2
unitig_46.g18791 Utricularia gibba HOM05D001617 ORTHO05D008611 1.1e-19 100.9 180 36.7
Mapoly0064s0006 Marchantia polymorpha HOM05D001617 ORTHO05D008611 2.4e-19 99.8 134 42.5
Pp3c25_310 Physcomitrium patens HOM05D001617 ORTHO05D008611 9.1e-19 97.8 87 50.6
arahy.Tifrunner.gnm1.ann1.JF0LYH Arachis hypogaea HOM05D001617 ORTHO05D008611 1.0e-17 94.4 85 62.4
SHI18558 Sapria himalayana HOM05D000291 ORTHO05D001358 2.5e-16 89.7 142 37.3
AagrBONN_evm.TU.Sc2ySwM_368.1506 Anthoceros agrestis HOM05D001617 ORTHO05D008611 1.6e-15 87.0 139 34.5
Os01g0166400 Oryza sativa ssp. japonica HOM05D001617 ORTHO05D008611 1.0e-14 84.3 73 50.7
FAN28G0538 Fragaria x ananassa HOM05D001617 ORTHO05D002495 1.1e-13 80.9 84 54.8
CBR_g38242 Chara braunii HOM05D001617 ORTHO05D008611 7.0e-11 71.6 136 32.4
Phvul.002G272304 Phaseolus vulgaris HOM05D001617 ORTHO05D008611 9.4e-08 61.2 40 72.5
Zm00001eb345970 Zea mays HOM05D001617 ORTHO05D008611 9.4e-08 61.2 103 38.8


User provided reference genes

Program Settings