Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G116700 Phaseolus vulgaris HOM05D005001 ORTHO05D005796 0.0e+00 1767.3 900 100.0
VMungo1215G1172 Vigna mungo HOM05D005001 ORTHO05D005796 0.0e+00 1588.5 887 91.9
Glyma.11G086000 Glycine max HOM05D005001 ORTHO05D005796 0.0e+00 1521.9 895 86.9
Glyma.01G158600 Glycine max HOM05D005001 ORTHO05D005796 0.0e+00 1517.3 895 87.2
Lj2g0010904 Lotus japonicus HOM05D005001 ORTHO05D005796 0.0e+00 1260.0 895 74.6
arahy.Tifrunner.gnm1.ann1.1YR532 Arachis hypogaea HOM05D005001 ORTHO05D005796 0.0e+00 1169.5 903 69.2
arahy.Tifrunner.gnm1.ann1.XJ0R0A Arachis hypogaea HOM05D005001 ORTHO05D005796 0.0e+00 1169.5 903 69.2
TPR.G33869 Trifolium pratense HOM05D005001 ORTHO05D005796 0.0e+00 1158.7 900 69.4
Medtr5g024240 Medicago truncatula HOM05D005001 ORTHO05D005796 0.0e+00 1155.6 900 69.9
Ca_24983_v3 Cicer arietinum L. HOM05D005001 ORTHO05D005796 0.0e+00 1134.0 905 69.7
Psat2g148080 Pisum sativum HOM05D005001 ORTHO05D005796 0.0e+00 1129.4 901 68.3
Lalb_Chr05g0214801 Lupinus albus HOM05D005001 ORTHO05D005796 0.0e+00 1080.1 903 66.6
Glyma.16G116100 Glycine max HOM05D005001 ORTHO05D005796 4.7e-294 1014.6 903 63.1
QL06p052982 Quercus lobata HOM05D005001 ORTHO05D005796 1.2e-278 963.4 904 59.6
Glyma.09G198000 Glycine max HOM05D005001 ORTHO05D005796 2.4e-274 949.1 874 61.6
Cfa007079 Carpinus fangiana HOM05D005001 ORTHO05D005796 2.0e-273 946.0 901 59.3
Dinv08162 Davidia involucrata HOM05D005001 ORTHO05D005796 1.5e-263 913.3 908 56.6
Atru.chr3.132 Acer truncatum HOM05D005001 ORTHO05D005796 6.8e-261 904.4 907 56.8
Prupe.7G183200 Prunus persica HOM05D005001 ORTHO05D005796 1.1e-258 897.1 905 57.5
Haze_03653 Corylus avellana HOM05D005001 ORTHO05D005796 1.4e-258 896.7 890 57.5
CiPaw.07G002600 Carya illinoinensis HOM05D005001 ORTHO05D005796 7.1e-258 894.4 902 55.4
Ciclev10024851m.g Citrus clementina HOM05D005001 ORTHO05D005796 3.5e-257 892.1 909 55.9
Phvul.003G270200 Phaseolus vulgaris HOM05D005001 ORTHO05D005796 4.3e-255 885.2 907 57.9
Gorai.003G002300 Gossypium raimondii HOM05D005001 ORTHO05D005796 9.5e-255 884.0 905 55.4
Duzib147G1512 Durio zibethinus HOM05D005001 ORTHO05D005796 2.8e-254 882.5 905 55.5
Gohir.D03G002000 Gossypium hirsutum HOM05D005001 ORTHO05D005796 4.7e-254 881.7 905 55.4
Gohir.A02G177800 Gossypium hirsutum HOM05D005001 ORTHO05D005796 1.2e-252 877.1 905 55.6
Lalb_Chr16g0380031 Lupinus albus HOM05D005001 ORTHO05D005796 2.0e-252 876.3 692 69.1
Potri.005G101700 Populus trichocarpa HOM05D005001 ORTHO05D005796 5.8e-252 874.8 905 54.8
Dinv40189 Davidia involucrata HOM05D005001 ORTHO05D005796 1.7e-251 873.2 907 54.9
RcHm_v2.0_Chr2g0097131 Rosa chinensis HOM05D005001 ORTHO05D005796 5.4e-250 868.2 904 55.1
Manes.01G155500 Manihot esculenta HOM05D005001 ORTHO05D005796 7.1e-250 867.8 911 54.8
VMungo0251G3365 Vigna mungo HOM05D005001 ORTHO05D005796 4.6e-249 865.1 911 56.9
Sabra05G0084100 Salix brachista HOM05D005001 ORTHO05D005796 1.7e-248 863.2 909 54.7
FAN26G0131 Fragaria x ananassa HOM05D005001 ORTHO05D005796 2.5e-247 859.4 904 54.3
Cpa.g.sc6.369 Carica papaya HOM05D005001 ORTHO05D005796 7.3e-247 857.8 920 53.6
FvH4_1g10290 Fragaria vesca HOM05D005001 ORTHO05D005796 7.3e-247 857.8 904 54.2
FAN19G0848 Fragaria x ananassa HOM05D005001 ORTHO05D005796 6.2e-246 854.7 904 54.1
COL.COLO4_22551 Corchorus olitorius HOM05D005001 ORTHO05D005796 2.0e-244 849.7 893 54.6
Thecc.01G005400 Theobroma cacao HOM05D005001 ORTHO05D005796 7.1e-242 841.3 867 55.0
Actinidia22897 Actinidia chinensis HOM05D005001 ORTHO05D005796 4.6e-241 838.6 904 52.2
CSS0006057 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 5.6e-239 831.6 900 53.6
Actinidia17358 Actinidia chinensis HOM05D005001 ORTHO05D005796 2.8e-238 829.3 905 52.2
ClCG10G000290 Citrullus lanatus HOM05D005001 ORTHO05D005796 1.4e-234 817.0 904 52.3
Manes.02G114100 Manihot esculenta HOM05D005001 ORTHO05D005796 7.9e-233 811.2 912 50.8
MD15G1231000 Malus domestica HOM05D005001 ORTHO05D005796 1.0e-232 810.8 906 53.3
TWI09G0186 Tripterygium wilfordii HOM05D005001 ORTHO05D005796 1.0e-232 810.8 914 52.7
TAR628G1461 Trochodendron aralioides HOM05D005001 ORTHO05D005796 8.7e-232 807.7 911 51.3
CsaV3_3G000320 Cucumis sativus L. HOM05D005001 ORTHO05D005796 1.3e-230 803.9 907 52.1
Lj4g0000674 Lotus japonicus HOM05D005001 ORTHO05D005796 5.8e-228 795.0 888 54.6
CANSAT25G0747 Cannabis sativa HOM05D005001 ORTHO05D005796 3.8e-227 792.3 911 53.0
CSS0002200 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 7.9e-225 784.6 904 49.7
MD02G1115000 Malus domestica HOM05D005001 ORTHO05D005796 6.7e-224 781.6 905 51.0
Gorai.001G199100 Gossypium raimondii HOM05D005001 ORTHO05D005796 1.1e-221 774.2 992 48.3
TWI53G0117 Tripterygium wilfordii HOM05D005001 ORTHO05D005796 3.1e-221 772.7 854 52.8
CiPaw.08G181700 Carya illinoinensis HOM05D005001 ORTHO05D005796 3.4e-220 769.2 849 54.4
Lj2C499T6 Lonicera japonica HOM05D005001 ORTHO05D005796 2.2e-219 766.5 890 50.6
FAN23G2126 Fragaria x ananassa HOM05D005001 ORTHO05D005796 2.5e-218 763.1 902 50.6
Sed0016412 Sechium edule HOM05D005001 ORTHO05D005796 1.0e-216 757.7 910 50.0
GSVIVG01026639001 Vitis vinifera HOM05D005001 ORTHO05D005796 6.3e-214 748.4 902 50.1
Cc07_g11880 Coffea canephora HOM05D005001 ORTHO05D005796 5.3e-213 745.3 904 47.1
Rhsim10G0195500 Rhododendron simsii HOM05D005001 ORTHO05D005796 1.6e-209 733.8 907 48.6
Nitab4.5_0001467g0010 Nicotiana tabacum HOM05D005001 ORTHO05D005796 2.7e-209 733.0 910 46.4
MELO3C013726.2 Cucumis melo HOM05D005001 ORTHO05D005796 1.0e-208 731.1 978 46.8
Sopen02g027420 Solanum pennellii HOM05D005001 ORTHO05D005796 2.9e-203 713.0 905 46.2
Solyc02g082680.4 Solanum lycopersicum HOM05D005001 ORTHO05D005796 4.2e-202 709.1 903 45.8
Nitab4.5_0004608g0060 Nicotiana tabacum HOM05D005001 ORTHO05D005796 2.7e-201 706.4 910 45.9
Oeu042477.2 Olea europaea HOM05D005001 ORTHO05D005796 6.3e-198 695.3 875 48.0
PGSC0003DMG400001566 Solanum tuberosum HOM05D005001 ORTHO05D005796 2.4e-197 693.3 891 45.7
Aqoxy5G01010 Aquilegia oxysepala HOM05D005001 ORTHO05D005796 5.9e-196 688.7 909 45.9
Peaxi162Scf01475g00020 Petunia axillaris HOM05D005001 ORTHO05D005796 5.9e-196 688.7 901 45.1
CSS0020393 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 1.2e-193 681.0 871 47.0
Nn6g31704 Nelumbo nucifera HOM05D005001 ORTHO05D005796 7.9e-193 678.3 890 46.6
vmacro20631 Vaccinium macrocarpon HOM05D005001 ORTHO05D005796 2.8e-190 669.8 876 47.3
Nn5g30991 Nelumbo nucifera HOM05D005001 ORTHO05D005796 1.9e-186 657.1 897 45.7
MSTRG.3631 Avicennia marina HOM05D005001 ORTHO05D005796 1.6e-185 654.1 915 44.6
SalBow3G0770 Salvia bowleyana HOM05D005001 ORTHO05D005796 2.0e-183 647.1 908 44.3
SalBow3G4537 Salvia bowleyana HOM05D005001 ORTHO05D005796 9.7e-183 644.8 908 44.2
Migut.L00777 Erythranthe guttata HOM05D005001 ORTHO05D005796 3.5e-180 636.3 908 43.8
MBI08_g12258_MAGBIO Magnolia biondii HOM05D005001 ORTHO05D005796 5.0e-179 632.5 965 41.9
Eucgr.J02537 Eucalyptus grandis HOM05D005001 ORTHO05D005796 6.1e-177 625.5 629 56.4
DCAR_002956 Daucus carota HOM05D005001 ORTHO05D005796 3.0e-176 623.2 894 43.2
EL10Ac6g15057 Beta vulgaris HOM05D005001 ORTHO05D005796 8.5e-171 605.1 847 42.9
Lsat_1_v5_gn_3_67981 Lactuca sativa HOM05D005001 ORTHO05D005796 1.5e-170 604.4 906 44.9
AUR62002047 Chenopodium quinoa HOM05D005001 ORTHO05D005796 8.8e-168 595.1 966 40.3
AUR62003748 Chenopodium quinoa HOM05D005001 ORTHO05D005796 8.8e-168 595.1 963 40.0
Hund03602 Selenicereus undatus HOM05D005001 ORTHO05D005796 4.9e-166 589.3 980 39.9
SalBow5G1781 Salvia bowleyana HOM05D005001 ORTHO05D005796 3.1e-165 586.6 846 43.1
ECA246G0522 Erigeron canadensis HOM05D005001 ORTHO05D005796 9.2e-165 585.1 793 48.2
PSO761G0634 Papaver somniferum HOM05D005001 ORTHO05D005796 3.5e-164 583.2 936 40.8
PSO210G6136 Papaver somniferum HOM05D005001 ORTHO05D005796 1.0e-163 581.6 940 40.7
Peaxi162Scf00122g02417 Petunia axillaris HOM05D005001 ORTHO05D005796 1.7e-163 580.9 820 44.6
Ah.02g122920 Amaranthus hybridus HOM05D005001 ORTHO05D005796 1.3e-158 564.7 910 40.1
arahy.Tifrunner.gnm1.ann1.3933SP Arachis hypogaea HOM05D005001 ORTHO05D005796 4.9e-158 562.8 896 43.4
THA.LOC104804295 Tarenaya hassleriana HOM05D005001 ORTHO05D005796 5.9e-156 555.8 906 40.7
HanXRQChr16g0531881 Helianthus annuus HOM05D005001 ORTHO05D005796 1.7e-155 554.3 903 40.5
PGR119G1974 Punica granatum HOM05D005001 ORTHO05D005796 3.1e-152 543.5 868 42.3
Nitab4.5_0005297g0010 Nicotiana tabacum HOM05D005001 ORTHO05D005796 1.3e-150 538.1 838 41.5
Sopen03g005960 Solanum pennellii HOM05D005001 ORTHO05D005796 6.0e-148 529.3 883 40.9
PGSC0003DMG400018683 Solanum tuberosum HOM05D005001 ORTHO05D005796 1.0e-147 528.5 907 40.2
Nitab4.5_0000495g0110 Nicotiana tabacum HOM05D005001 ORTHO05D005796 1.7e-147 527.7 833 41.5
Hund19695 Selenicereus undatus HOM05D005001 ORTHO05D005796 3.3e-146 523.5 919 39.0
Solyc03g032110.3 Solanum lycopersicum HOM05D005001 ORTHO05D005796 5.2e-144 516.2 881 40.2
Sp3g30910 Schrenkiella parvula HOM05D005001 ORTHO05D005796 3.9e-139 500.0 929 39.7
Carub.0003s3164 Capsella rubella HOM05D005001 ORTHO05D005796 1.6e-137 494.6 927 40.0
Thhalv10022564m.g Eutrema salsugineum HOM05D005001 ORTHO05D005796 6.2e-137 492.7 927 39.2
SGA_v2.0_scaffold41G15753 Striga asiatica HOM05D005001 ORTHO05D005796 6.2e-137 492.7 903 39.9
AL3G50520 Arabidopsis lyrata HOM05D005001 ORTHO05D005796 1.4e-136 491.5 925 39.9
BcaC06g36289 Brassica carinata HOM05D005001 ORTHO05D005796 2.0e-135 487.6 919 38.8
BolC7t40970H Brassica oleracea HOM05D005001 ORTHO05D005796 2.6e-135 487.3 916 38.4
C07p05710 Brassica napus HOM05D005001 ORTHO05D005796 3.4e-135 486.9 916 38.4
A07p03420 Brassica napus HOM05D005001 ORTHO05D005796 1.7e-134 484.6 920 39.0
BraA07t28140Z Brassica rapa HOM05D005001 ORTHO05D005796 1.7e-134 484.6 920 39.0
AT2G17550 Arabidopsis thaliana HOM05D005001 ORTHO05D005796 8.4e-134 482.3 926 39.3
Gohir.D07G178000 Gossypium hirsutum HOM05D005001 ORTHO05D005796 1.1e-130 471.9 718 44.4
BcaB03g16525 Brassica carinata HOM05D005001 ORTHO05D005796 7.3e-130 469.2 920 39.3
CARHR107730 Cardamine hirsuta HOM05D005001 ORTHO05D005796 1.6e-129 468.0 920 39.3
Gohir.A07G171200 Gossypium hirsutum HOM05D005001 ORTHO05D005796 2.0e-127 461.1 690 45.7
Aa31LG8G14850 Aethionema arabicum HOM05D005001 ORTHO05D005796 3.1e-120 437.2 917 36.8
PSO675G2514 Papaver somniferum HOM05D005001 ORTHO05D005796 4.6e-116 423.3 932 35.8
PSO541G4728 Papaver somniferum HOM05D005001 ORTHO05D005796 7.4e-114 416.0 941 35.9
Sc03g0003960 Simmondsia chinensis HOM05D005001 ORTHO05D005796 2.8e-113 414.1 620 43.2
ATR0807G148 Amborella trichopoda HOM05D005001 ORTHO05D005796 5.3e-112 409.8 833 36.0
MBI05_g14348_MAGBIO Magnolia biondii HOM05D005001 ORTHO05D005796 1.2e-111 408.7 853 34.8
THA.LOC104819718 Tarenaya hassleriana HOM05D005001 ORTHO05D005796 2.2e-94 351.3 895 32.8
Os03g0130700 Oryza sativa ssp. japonica HOM05D005001 ORTHO05D005796 2.7e-92 344.4 957 32.1
HPP92_007108 Vanilla planifolia HOM05D005001 ORTHO05D005796 4.8e-89 333.6 925 30.4
Zm00001eb002440 Zea mays HOM05D005001 ORTHO05D005796 9.7e-82 309.3 942 30.4
Lalb_Chr16g0380041 Lupinus albus HOM05D005001 ORTHO05D005796 5.3e-80 303.5 212 74.1
Medtr5g025350 Medicago truncatula HOM05D005001 ORTHO05D005796 5.5e-69 266.9 240 65.8
Lj4A237T62 Lonicera japonica HOM05D005001 ORTHO05D005796 1.0e-67 262.7 542 37.6
unitig_37.g12434 Utricularia gibba HOM05D005001 ORTHO05D005796 1.2e-66 259.2 404 39.1
arahy.Tifrunner.gnm1.ann1.8C07DS Arachis hypogaea HOM05D005001 ORTHO05D005796 2.4e-64 251.5 625 35.5
FAN28G2205 Fragaria x ananassa HOM05D005001 ORTHO05D005796 1.8e-43 182.2 180 56.1
Os06g0728200 Oryza sativa ssp. japonica HOM05D005001 ORTHO05D005796 4.1e-40 171.0 944 25.5
Medtr5g025380 Medicago truncatula HOM05D005001 ORTHO05D005796 4.6e-39 167.5 137 63.5
HPP92_022687 Vanilla planifolia HOM05D005001 ORTHO05D005796 3.9e-38 164.5 386 35.5
Thhalv10023126m.g Eutrema salsugineum HOM05D005001 ORTHO05D005796 1.3e-30 139.4 232 38.8
Lj4P237T25 Lonicera japonica HOM05D005001 ORTHO05D005796 3.9e-30 137.9 207 43.5
unitig_37.g12435 Utricularia gibba HOM05D005001 ORTHO05D005796 5.1e-30 137.5 335 32.2
CDE05G1993 Ceratophyllum demersum HOM05D005001 ORTHO05D005796 2.0e-26 125.6 615 27.0
HPP92_022688 Vanilla planifolia HOM05D005001 ORTHO05D005796 2.0e-26 125.6 396 29.3
CDE05G3420 Ceratophyllum demersum HOM05D005001 ORTHO05D005796 3.9e-22 111.3 503 27.0
SEGI_29651 Sequoiadendron giganteum HOM05D002769 ORTHO05D003160 8.9e-19 100.1 690 24.1
SEGI_23141 Sequoiadendron giganteum HOM05D002769 ORTHO05D001913 1.3e-14 86.3 442 24.4
Dinv23669 Davidia involucrata HOM05D005001 ORTHO05D005796 1.7e-14 85.9 152 41.4
MBI07_g08924_MAGBIO Magnolia biondii HOM05D002769 ORTHO05D003160 7.3e-13 80.5 1037 21.3
MSTRG.18369 Avicennia marina HOM05D002769 ORTHO05D003160 6.2e-12 77.4 993 21.1
QL09p043841 Quercus lobata HOM05D002769 ORTHO05D003160 1.1e-11 76.6 1025 20.8
Dinv30187 Davidia involucrata HOM05D005001 ORTHO05D005796 1.4e-11 76.3 152 37.5
Manes.12G040100 Manihot esculenta HOM05D002769 ORTHO05D003160 6.9e-11 73.9 1023 21.2
Nitab4.5_0002330g0010 Nicotiana tabacum HOM05D002769 ORTHO05D003160 2.9e-09 68.6 1003 20.8
PSO764G0032 Papaver somniferum HOM05D002769 ORTHO05D003160 4.9e-09 67.8 838 21.4
MSTRG.17533 Avicennia marina HOM05D002769 ORTHO05D003160 8.4e-09 67.0 1018 21.9
Hma1.2p1_1393F.1_g280250 Hydrangea macrophylla HOM05D002769 ORTHO05D003160 8.4e-09 67.0 1015 19.9
Ah.08g213810 Amaranthus hybridus HOM05D002769 ORTHO05D003160 1.9e-08 65.9 967 20.8
Dinv03480 Davidia involucrata HOM05D005001 ORTHO05D005796 5.4e-08 64.3 111 42.3
Hma1.2p1_1224F.1_g268500 Hydrangea macrophylla HOM05D002769 ORTHO05D003160 5.4e-08 64.3 618 21.7
Migut.N02243 Erythranthe guttata HOM05D002769 ORTHO05D003160 7.1e-08 63.9 358 24.6
Hma1.2p1_0825F.1_g224750 Hydrangea macrophylla HOM05D002769 ORTHO05D003160 9.3e-08 63.5 618 21.7
PSO832G1375 Papaver somniferum HOM05D002769 ORTHO05D003160 2.1e-07 62.4 660 21.2
Solyc06g083660.4 Solanum lycopersicum HOM05D002769 ORTHO05D003160 2.1e-07 62.4 1011 21.9
Nitab4.5_0001557g0040 Nicotiana tabacum HOM05D002769 ORTHO05D003160 3.5e-07 61.6 960 21.2
FvH4_2g19940 Fragaria vesca HOM05D002769 ORTHO05D003160 7.8e-07 60.5 107 31.8
FAN24G0991 Fragaria x ananassa HOM05D002769 ORTHO05D003160 7.8e-07 60.5 107 31.8
Peaxi162Scf00517g00316 Petunia axillaris HOM05D002769 ORTHO05D003160 1.0e-06 60.1 1013 20.9
FAN27G3465 Fragaria x ananassa HOM05D002769 ORTHO05D003160 2.3e-06 58.9 107 31.8
FAN14G0266 Fragaria x ananassa HOM05D002769 ORTHO05D003160 3.0e-06 58.5 107 31.8
FAN15G3258 Fragaria x ananassa HOM05D002769 ORTHO05D003160 3.0e-06 58.5 107 31.8
PGSC0003DMG400018957 Solanum tuberosum HOM05D002769 ORTHO05D003160 3.0e-06 58.5 113 37.2
HPP92_019094 Vanilla planifolia HOM05D002036 ORTHO05D001913 3.0e-06 58.5 253 25.3
Potri.002G253600 Populus trichocarpa HOM05D002769 ORTHO05D003160 3.9e-06 58.2 577 22.0
PGSC0003DMG400020083 Solanum tuberosum HOM05D002769 ORTHO05D003160 3.9e-06 58.2 968 21.9
Prupe.6G254700 Prunus persica HOM05D002515 ORTHO05D002722 6.6e-06 57.4 356 24.2
Sopen06g035050 Solanum pennellii HOM05D002769 ORTHO05D003160 6.6e-06 57.4 605 23.3
CiPaw.04G192400 Carya illinoinensis HOM05D002769 ORTHO05D003160 8.7e-06 57.0 996 21.0
Psat6g068640 Pisum sativum HOM05D002036 ORTHO05D001913 8.7e-06 57.0 949 20.7
Rhsim13G0041700 Rhododendron simsii HOM05D002769 ORTHO05D003160 8.7e-06 57.0 107 32.7
vmacro02723 Vaccinium macrocarpon HOM05D002769 ORTHO05D003160 8.7e-06 57.0 107 32.7


User provided reference genes

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