Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G110400 Phaseolus vulgaris HOM05D005734 ORTHO05D006990 1.4e-105 386.3 209 100.0
VMungo1215G0268 Vigna mungo HOM05D005734 ORTHO05D006990 1.2e-99 366.7 209 94.7
Glyma.11G075600 Glycine max HOM05D005734 ORTHO05D006990 4.4e-94 348.2 209 90.4
Glyma.01G167600 Glycine max HOM05D005734 ORTHO05D006990 1.2e-91 340.1 209 87.6
TPR.G2344 Trifolium pratense HOM05D005734 ORTHO05D006990 3.0e-87 325.5 207 82.6
Medtr5g021750 Medicago truncatula HOM05D005734 ORTHO05D006990 4.8e-85 318.2 204 80.9
Psat2g155360 Pisum sativum HOM05D005734 ORTHO05D006990 4.8e-85 318.2 207 81.6
Ca_24908_v3 Cicer arietinum L. HOM05D005734 ORTHO05D006990 8.3e-85 317.4 207 81.2
Lj2g0025294 Lotus japonicus HOM05D005734 ORTHO05D006990 1.6e-83 313.2 211 82.9
Lalb_Chr16g0391171 Lupinus albus HOM05D005734 ORTHO05D006990 2.1e-80 302.8 212 79.2
QL06p033653 Quercus lobata HOM05D005734 ORTHO05D006990 1.3e-74 283.5 206 74.3
Dinv33615 Davidia involucrata HOM05D005734 ORTHO05D006990 5.6e-73 278.1 207 71.5
arahy.Tifrunner.gnm1.ann1.GC558H Arachis hypogaea HOM05D005734 ORTHO05D006990 9.5e-73 277.3 208 72.1
Sabra07G0011400 Salix brachista HOM05D005734 ORTHO05D006990 9.5e-73 277.3 208 75.0
Thecc.01G021200 Theobroma cacao HOM05D005734 ORTHO05D006990 6.1e-72 274.6 208 72.1
COL.COLO4_21933 Corchorus olitorius HOM05D005734 ORTHO05D006990 8.0e-72 274.2 208 71.6
CiPaw.08G133400 Carya illinoinensis HOM05D005734 ORTHO05D006990 2.3e-71 272.7 205 71.7
Lj2C466G2 Lonicera japonica HOM05D005734 ORTHO05D006990 3.1e-71 272.3 201 75.6
Rhsim08G0034500 Rhododendron simsii HOM05D005734 ORTHO05D006990 5.2e-71 271.6 204 71.6
MD15G1247200 Malus domestica HOM05D005734 ORTHO05D006990 8.9e-71 270.8 194 73.2
TAR376G0390 Trochodendron aralioides HOM05D005734 ORTHO05D006990 2.6e-70 269.2 207 70.0
Gorai.003G010600 Gossypium raimondii HOM05D005734 ORTHO05D006990 5.8e-70 268.1 192 74.0
Cc07_g10570 Coffea canephora HOM05D005734 ORTHO05D006990 9.8e-70 267.3 188 76.1
Potri.005G116300 Populus trichocarpa HOM05D005734 ORTHO05D006990 9.8e-70 267.3 199 74.9
Gohir.D03G010200 Gossypium hirsutum HOM05D005734 ORTHO05D006990 1.7e-69 266.5 200 71.0
Manes.02G102700 Manihot esculenta HOM05D005734 ORTHO05D006990 2.2e-69 266.2 189 75.7
Solyc02g084220.3 Solanum lycopersicum HOM05D005734 ORTHO05D006990 1.1e-68 263.8 192 74.5
TWI73G0895 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 1.9e-68 263.1 207 70.0
RcHm_v2.0_Chr2g0099641 Rosa chinensis HOM05D005734 ORTHO05D006990 2.4e-68 262.7 208 67.3
TWI09G0878 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 3.2e-68 262.3 205 71.2
Gohir.A02G169800 Gossypium hirsutum HOM05D005734 ORTHO05D006990 5.4e-68 261.5 186 73.7
SalBow3G4629 Salvia bowleyana HOM05D005734 ORTHO05D006990 5.4e-68 261.5 210 66.7
Peaxi162Scf00083g00086 Petunia axillaris HOM05D005734 ORTHO05D006990 7.0e-68 261.2 198 73.2
Sopen02g028960 Solanum pennellii HOM05D005734 ORTHO05D006990 7.0e-68 261.2 192 74.0
MSTRG.2698 Avicennia marina HOM05D005734 ORTHO05D006990 9.2e-68 260.8 188 73.9
MD02G1134200 Malus domestica HOM05D005734 ORTHO05D006990 9.2e-68 260.8 209 68.4
Duzib147G0754 Durio zibethinus HOM05D005734 ORTHO05D006990 1.2e-67 260.4 191 73.8
Ciclev10026469m.g Citrus clementina HOM05D005734 ORTHO05D006990 1.6e-67 260.0 210 69.5
ClCG07G008420 Citrullus lanatus HOM05D005734 ORTHO05D006990 3.5e-67 258.8 205 68.8
Eucgr.K02152 Eucalyptus grandis HOM05D005734 ORTHO05D006990 6.0e-67 258.1 207 67.1
Nitab4.5_0005721g0110 Nicotiana tabacum HOM05D005734 ORTHO05D006990 1.3e-66 256.9 207 70.5
FvH4_1g12000 Fragaria vesca HOM05D005734 ORTHO05D006990 1.7e-66 256.5 208 66.3
FAN19G0086 Fragaria x ananassa HOM05D005734 ORTHO05D006990 1.7e-66 256.5 208 66.3
Actinidia31004 Actinidia chinensis HOM05D005734 ORTHO05D006990 6.6e-66 254.6 191 71.7
Nitab4.5_0004254g0030 Nicotiana tabacum HOM05D005734 ORTHO05D006990 8.6e-66 254.2 207 70.0
Nn6g32291 Nelumbo nucifera HOM05D005734 ORTHO05D006990 1.1e-65 253.8 193 68.9
Sabra05G0095300 Salix brachista HOM05D005734 ORTHO05D006990 1.5e-65 253.4 188 73.9
Sed0005630 Sechium edule HOM05D005734 ORTHO05D006990 4.3e-65 251.9 196 70.9
CsaV3_4G005730 Cucumis sativus L. HOM05D005734 ORTHO05D006990 7.3e-65 251.1 209 67.5
CSS0031169 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 1.2e-64 250.4 193 71.0
PGSC0003DMG400003554 Solanum tuberosum HOM05D005734 ORTHO05D006990 1.2e-64 250.4 218 66.1
TAR628G0339 Trochodendron aralioides HOM05D005734 ORTHO05D006990 1.6e-64 250.0 194 67.0
GSVIVG01018804001 Vitis vinifera HOM05D005734 ORTHO05D006990 3.6e-64 248.8 207 68.1
Migut.H01144 Erythranthe guttata HOM05D005734 ORTHO05D006990 1.1e-63 247.3 191 68.1
AT5G66290 Arabidopsis thaliana HOM05D005734 ORTHO05D006990 6.8e-63 244.6 186 71.0
DCAR_017347 Daucus carota HOM05D005734 ORTHO05D006990 8.9e-63 244.2 193 68.4
Ah.03g141620 Amaranthus hybridus HOM05D005734 ORTHO05D006990 1.5e-62 243.4 205 67.3
EL10Ac3g07303 Beta vulgaris HOM05D005734 ORTHO05D006990 2.0e-62 243.0 191 67.5
PSO210G7806 Papaver somniferum HOM05D005734 ORTHO05D006990 2.6e-62 242.7 208 65.9
AL8G45230 Arabidopsis lyrata HOM05D005734 ORTHO05D006990 3.4e-62 242.3 200 67.0
THA.LOC104819182 Tarenaya hassleriana HOM05D005734 ORTHO05D006990 4.4e-62 241.9 186 70.4
Thhalv10004735m.g Eutrema salsugineum HOM05D005734 ORTHO05D006990 2.2e-61 239.6 210 63.8
Carub.0008s2820 Capsella rubella HOM05D005734 ORTHO05D006990 2.9e-61 239.2 187 69.5
Hund14038 Selenicereus undatus HOM05D005734 ORTHO05D006990 4.9e-61 238.4 228 59.6
Sp2g30330 Schrenkiella parvula HOM05D005734 ORTHO05D006990 1.4e-60 236.9 206 65.5
Aa31LG1G14770 Aethionema arabicum HOM05D005734 ORTHO05D006990 5.4e-60 235.0 187 68.4
Prupe.7G166600 Prunus persica HOM05D005734 ORTHO05D006990 1.6e-59 233.4 207 63.3
Aqoxy4G02678 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 4.6e-59 231.9 225 59.6
Aqoxy4G02673 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 1.0e-58 230.7 224 59.4
Cpa.g.sc6.229 Carica papaya HOM05D005734 ORTHO05D006990 3.9e-58 228.8 198 66.7
Lsat_1_v5_gn_3_73980 Lactuca sativa HOM05D005734 ORTHO05D006990 6.6e-58 228.0 200 66.5
Gohir.A12G060300 Gossypium hirsutum HOM05D005734 ORTHO05D006990 7.3e-57 224.6 192 64.6
BcaNung04509 Brassica carinata HOM05D005734 ORTHO05D006990 2.1e-56 223.0 200 63.5
A07p17570 Brassica napus HOM05D005734 ORTHO05D006990 4.7e-56 221.9 197 64.5
BcaC06g34694 Brassica carinata HOM05D005734 ORTHO05D006990 8.1e-56 221.1 188 66.0
C07p25530 Brassica napus HOM05D005734 ORTHO05D006990 8.1e-56 221.1 188 66.0
BolC7t43073H Brassica oleracea HOM05D005734 ORTHO05D006990 8.1e-56 221.1 188 66.0
BcaB02g10036 Brassica carinata HOM05D005734 ORTHO05D006990 1.1e-55 220.7 201 63.7
BcaC04g23124 Brassica carinata HOM05D005734 ORTHO05D006990 1.4e-55 220.3 200 62.5
BcaNung05273 Brassica carinata HOM05D005734 ORTHO05D006990 1.4e-55 220.3 200 62.5
RcHm_v2.0_Chr1g0353231 Rosa chinensis HOM05D005734 ORTHO05D006990 1.8e-55 219.9 174 66.1
BcaC04g23120 Brassica carinata HOM05D005734 ORTHO05D006990 2.3e-55 219.5 190 65.3
ECA246G4348 Erigeron canadensis HOM05D000013 ORTHO05D000011 4.0e-55 218.8 196 63.8
ATR0147G004 Amborella trichopoda HOM05D005734 ORTHO05D006990 6.8e-55 218.0 180 64.4
C09p11890 Brassica napus HOM05D005734 ORTHO05D006990 2.0e-54 216.5 182 64.8
BolC9t54077H Brassica oleracea HOM05D005734 ORTHO05D006990 2.0e-54 216.5 182 64.8
HPP92_018404 Vanilla planifolia HOM05D005734 ORTHO05D006990 2.0e-54 216.5 189 64.0
HanXRQChr15g0482851 Helianthus annuus HOM05D005734 ORTHO05D006990 2.6e-54 216.1 195 62.6
RcHm_v2.0_Chr5g0080231 Rosa chinensis HOM05D005734 ORTHO05D006990 1.7e-53 213.4 158 68.4
FAN26G0019 Fragaria x ananassa HOM05D005734 ORTHO05D006990 2.2e-53 213.0 209 57.9
MBI05_g26512_MAGBIO Magnolia biondii HOM05D005734 ORTHO05D006990 2.2e-53 213.0 210 59.0
RcHm_v2.0_Chr0c39g0503221 Rosa chinensis HOM05D005734 ORTHO05D006990 6.4e-53 211.5 148 71.6
HanXRQChr16g0531031 Helianthus annuus HOM05D005734 ORTHO05D006990 1.1e-52 210.7 189 63.0
unitig_699.g19712 Utricularia gibba HOM05D005734 ORTHO05D006990 1.4e-52 210.3 185 61.1
CSS0012385 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 3.2e-52 209.1 151 76.8
CSS0021905 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 9.2e-52 207.6 151 76.2
CARHR281420 Cardamine hirsuta HOM05D005734 ORTHO05D006990 9.2e-52 207.6 143 74.1
Os03g0727100 Oryza sativa ssp. japonica HOM05D005734 ORTHO05D006990 2.7e-51 206.1 213 58.7
vmacro18422 Vaccinium macrocarpon HOM05D005734 ORTHO05D006990 6.0e-51 204.9 237 54.0
Nn5g29268 Nelumbo nucifera HOM05D005734 ORTHO05D006990 7.8e-51 204.5 208 58.2
Zm00001eb055930 Zea mays HOM05D005734 ORTHO05D006990 1.0e-50 204.1 204 58.3
Sc16g0002040 Simmondsia chinensis HOM05D005734 ORTHO05D006990 2.3e-50 203.0 139 77.0
Lsat_1_v5_gn_4_152781 Lactuca sativa HOM05D005734 ORTHO05D006990 1.9e-49 199.9 188 56.4
Cfa006957 Carpinus fangiana HOM05D005734 ORTHO05D006990 5.6e-49 198.4 207 58.5
QL06p033647 Quercus lobata HOM05D005734 ORTHO05D006990 4.7e-48 195.3 137 75.2
A09p10030 Brassica napus HOM05D005734 ORTHO05D006990 1.1e-47 194.1 198 56.6
arahy.Tifrunner.gnm1.ann1.DFQ3ES Arachis hypogaea HOM05D005734 ORTHO05D006990 1.4e-47 193.7 141 70.9
FAN23G1819 Fragaria x ananassa HOM05D005734 ORTHO05D006990 4.2e-44 182.2 198 56.1
Potri.007G014000 Populus trichocarpa HOM05D005734 ORTHO05D006990 2.1e-43 179.9 135 74.8
Atru.chr3.782 Acer truncatum HOM05D005734 ORTHO05D006990 4.6e-43 178.7 183 55.7
SGA_v2.0_scaffold137G35098 Striga asiatica HOM05D005734 ORTHO05D006990 7.8e-43 177.9 114 78.9
AUR62018084 Chenopodium quinoa HOM05D005734 ORTHO05D006990 1.7e-42 176.8 118 75.4
MELO3C016376.2 Cucumis melo HOM05D005734 ORTHO05D006990 2.5e-41 172.9 136 71.3
ATR0876G001 Amborella trichopoda HOM05D005734 ORTHO05D006990 1.7e-37 160.2 111 67.6
PSO170G3799 Papaver somniferum HOM05D005734 ORTHO05D006990 6.0e-35 151.8 122 68.9
Gorai.008G063500 Gossypium raimondii HOM05D005734 ORTHO05D006990 3.1e-31 139.4 113 66.4
CDE11G0627 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 1.3e-29 134.0 124 56.5
Mapoly0166s0009 Marchantia polymorpha HOM05D005734 ORTHO05D006990 4.9e-29 132.1 176 42.0
Sc16g0006390 Simmondsia chinensis HOM05D005734 ORTHO05D006990 1.1e-28 131.0 88 77.3
Sc18g0002570 Simmondsia chinensis HOM05D005734 ORTHO05D006990 2.4e-28 129.8 83 79.5
Sc09g0006730 Simmondsia chinensis HOM05D005734 ORTHO05D006990 2.7e-27 126.3 88 75.0
Medtr5g021780 Medicago truncatula HOM05D005734 ORTHO05D006990 4.6e-27 125.6 84 75.0
FAN28G1963 Fragaria x ananassa HOM05D005734 ORTHO05D006990 1.0e-26 124.4 99 64.6
Lsat_1_v5_gn_4_38760 Lactuca sativa HOM05D005734 ORTHO05D006990 4.8e-24 115.5 119 52.1
Pp3c14_25740 Physcomitrium patens HOM05D005734 ORTHO05D006990 6.2e-24 115.2 177 40.1
CDE05G1720 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 1.1e-23 114.4 148 48.6
Haze_03794 Corylus avellana HOM05D005734 ORTHO05D006990 1.2e-22 110.9 69 81.2
Lj2A474G36 Lonicera japonica HOM05D005734 ORTHO05D006990 2.0e-22 110.2 151 47.0
BraA09t36646Z Brassica rapa HOM05D005734 ORTHO05D006990 4.5e-22 109.0 106 56.6
Pp3c1_42750 Physcomitrium patens HOM05D005734 ORTHO05D006990 1.7e-21 107.1 186 36.6
Gohir.D12G060400 Gossypium hirsutum HOM05D005734 ORTHO05D006990 4.2e-20 102.4 78 67.9
RcHm_v2.0_Chr2g0126361 Rosa chinensis HOM05D005734 ORTHO05D006990 4.6e-19 99.0 64 76.6
Lj2C474G2 Lonicera japonica HOM05D005734 ORTHO05D006990 6.7e-18 95.1 66 78.8
SMO228G0004 Selaginella moellendorffii HOM05D005734 ORTHO05D006990 2.4e-15 86.7 108 39.8
AagrBONN_evm.TU.Sc2ySwM_117.481 Anthoceros agrestis HOM05D005734 ORTHO05D006990 4.0e-15 85.9 138 38.4
Eucgr.L03507 Eucalyptus grandis HOM05D005734 ORTHO05D006990 3.7e-08 62.8 82 46.3
HanXRQChr04g0110971 Helianthus annuus HOM05D000316 ORTHO05D012803 1.0e-05 54.7 63 52.4


User provided reference genes

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