Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G108800 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 1.7e-160 569.3 297 100.0
Glyma.01G166300 Glycine max HOM05D003676 ORTHO05D004262 1.7e-91 340.1 327 64.5
Glyma.11G077200 Glycine max HOM05D003676 ORTHO05D004262 6.0e-81 305.1 334 61.1
Lj4g0000664 Lotus japonicus HOM05D003676 ORTHO05D004262 4.3e-63 245.7 319 53.9
Lalb_Chr05g0212401 Lupinus albus HOM05D003676 ORTHO05D004262 6.3e-62 241.9 336 51.2
TPR.G18183 Trifolium pratense HOM05D003676 ORTHO05D004262 2.3e-56 223.4 317 49.2
arahy.Tifrunner.gnm1.ann1.CCI0LY Arachis hypogaea HOM05D003676 ORTHO05D004262 1.7e-54 217.2 344 47.1
Psat4g099080 Pisum sativum HOM05D003676 ORTHO05D004262 1.7e-54 217.2 340 46.5
arahy.Tifrunner.gnm1.ann1.3LB61T Arachis hypogaea HOM05D003676 ORTHO05D004262 2.8e-54 216.5 333 47.1
FAN26G1220 Fragaria x ananassa HOM05D003676 ORTHO05D004262 3.7e-54 216.1 333 45.9
Ca_25824_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 4.8e-54 215.7 296 48.0
RcHm_v2.0_Chr2g0099451 Rosa chinensis HOM05D003676 ORTHO05D004262 4.8e-54 215.7 336 45.8
Medtr8g075950 Medicago truncatula HOM05D003676 ORTHO05D004262 4.1e-53 212.6 342 45.9
FAN23G0443 Fragaria x ananassa HOM05D003676 ORTHO05D004262 7.0e-53 211.8 334 45.2
QL06p032755 Quercus lobata HOM05D003676 ORTHO05D004262 1.2e-52 211.1 357 46.5
MD02G1132500 Malus domestica HOM05D003676 ORTHO05D004262 1.5e-52 210.7 346 45.1
MD15G1246000 Malus domestica HOM05D003676 ORTHO05D004262 2.0e-52 210.3 348 46.8
Medtr5g022010 Medicago truncatula HOM05D003676 ORTHO05D004262 2.0e-52 210.3 281 51.2
CSS0022685 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 1.7e-51 207.2 346 46.5
Ciclev10025949m.g Citrus clementina HOM05D003676 ORTHO05D004262 1.7e-51 207.2 330 45.5
FvH4_1g11840 Fragaria vesca HOM05D003676 ORTHO05D004262 2.9e-51 206.5 357 43.7
TPR.G30058 Trifolium pratense HOM05D003676 ORTHO05D004262 4.2e-50 202.6 330 43.9
FAN19G1818 Fragaria x ananassa HOM05D003676 ORTHO05D004262 7.2e-50 201.8 348 43.4
CSS0021991 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 1.6e-49 200.7 347 46.4
Dinv33627 Davidia involucrata HOM05D003676 ORTHO05D004262 2.1e-49 200.3 323 44.9
Dinv40087 Davidia involucrata HOM05D003676 ORTHO05D004262 2.7e-49 199.9 349 46.4
Ca_22374_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 1.4e-48 197.6 312 44.9
Prupe.7G168100 Prunus persica HOM05D003676 ORTHO05D004262 1.4e-48 197.6 360 43.3
PGSC0003DMG400003640 Solanum tuberosum HOM05D003676 ORTHO05D004262 1.4e-48 197.6 306 47.1
CANSAT01G0038 Cannabis sativa HOM05D003676 ORTHO05D004262 1.8e-48 197.2 349 43.0
Solyc02g083890.4 Solanum lycopersicum HOM05D003676 ORTHO05D004262 5.2e-48 195.7 342 43.9
Actinidia17444 Actinidia chinensis HOM05D003676 ORTHO05D004262 8.8e-48 194.9 326 45.4
TAR628G0168 Trochodendron aralioides HOM05D003676 ORTHO05D004262 1.1e-47 194.5 325 41.8
CiPaw.07G058500 Carya illinoinensis HOM05D003676 ORTHO05D004262 1.3e-46 191.0 361 41.8
Glyma.16G128800 Glycine max HOM05D003676 ORTHO05D004262 2.2e-46 190.3 327 45.0
Sopen02g028680 Solanum pennellii HOM05D003676 ORTHO05D004262 2.8e-46 189.9 346 43.1
Cpa.g.sc6.251 Carica papaya HOM05D003676 ORTHO05D004262 6.3e-46 188.7 332 42.5
Peaxi162Scf00083g00320 Petunia axillaris HOM05D003676 ORTHO05D004262 1.1e-45 188.0 336 43.5
Hund14045 Selenicereus undatus HOM05D003676 ORTHO05D004262 1.1e-45 188.0 340 42.6
Potri.005G114100 Populus trichocarpa HOM05D003676 ORTHO05D004262 1.4e-45 187.6 347 44.4
TAR381G0332 Trochodendron aralioides HOM05D003676 ORTHO05D004262 1.4e-45 187.6 342 42.4
Cfa006972 Carpinus fangiana HOM05D003676 ORTHO05D004262 1.8e-45 187.2 336 44.6
Manes.01G145700 Manihot esculenta HOM05D003676 ORTHO05D004262 1.8e-45 187.2 336 44.6
Psat2g154560 Pisum sativum HOM05D003676 ORTHO05D004262 4.1e-45 186.0 307 45.9
Actinidia30997 Actinidia chinensis HOM05D003676 ORTHO05D004262 5.3e-45 185.7 314 44.6
Nn5g30150 Nelumbo nucifera HOM05D003676 ORTHO05D004262 7.0e-45 185.3 357 40.6
TAR376G0994 Trochodendron aralioides HOM05D003676 ORTHO05D004262 9.1e-45 184.9 322 43.8
Cc07_g10720 Coffea canephora HOM05D003676 ORTHO05D004262 1.2e-44 184.5 358 42.2
Eucgr.I02350 Eucalyptus grandis HOM05D003676 ORTHO05D004262 1.2e-44 184.5 358 39.7
Sed0017342 Sechium edule HOM05D003676 ORTHO05D004262 1.2e-44 184.5 337 41.5
Sabra05G0093400 Salix brachista HOM05D003676 ORTHO05D004262 2.0e-44 183.7 346 42.8
Glyma.02G048700 Glycine max HOM05D003676 ORTHO05D004262 2.6e-44 183.3 333 40.8
Phvul.003G262100 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 2.6e-44 183.3 324 44.4
Nitab4.5_0003382g0020 Nicotiana tabacum HOM05D003676 ORTHO05D004262 1.0e-43 181.4 308 46.1
FAN28G1902 Fragaria x ananassa HOM05D003676 ORTHO05D004262 1.7e-43 180.6 321 43.3
AUR62029464 Chenopodium quinoa HOM05D003676 ORTHO05D004262 5.0e-43 179.1 347 40.9
Duzib187G0981 Durio zibethinus HOM05D003676 ORTHO05D004262 6.5e-43 178.7 349 43.0
Hund16490 Selenicereus undatus HOM05D003676 ORTHO05D004262 6.5e-43 178.7 360 39.4
Lalb_Chr09g0321731 Lupinus albus HOM05D003676 ORTHO05D004262 1.1e-42 177.9 278 46.0
CsaV3_3G000800 Cucumis sativus L. HOM05D003676 ORTHO05D004262 2.5e-42 176.8 338 41.7
VMungo0251G0225 Vigna mungo HOM05D003676 ORTHO05D004262 3.2e-42 176.4 345 42.0
Nn1g05889 Nelumbo nucifera HOM05D003676 ORTHO05D004262 4.2e-42 176.0 332 41.9
Thecc.01G019000 Theobroma cacao HOM05D003676 ORTHO05D004262 5.5e-42 175.6 357 42.3
Nitab4.5_0005660g0010 Nicotiana tabacum HOM05D003676 ORTHO05D004262 3.6e-41 172.9 326 41.4
Gohir.A02G170700 Gossypium hirsutum HOM05D003676 ORTHO05D004262 8.0e-41 171.8 294 43.9
Aqoxy6G02292 Aquilegia oxysepala HOM05D003676 ORTHO05D004262 1.0e-40 171.4 326 42.3
MELO3C013767.2 Cucumis melo HOM05D003676 ORTHO05D004262 1.4e-40 171.0 339 41.6
MBI05_g37447_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 2.3e-40 170.2 328 40.9
CSS0018215 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 3.0e-40 169.9 342 42.4
AUR62003369 Chenopodium quinoa HOM05D003676 ORTHO05D004262 3.0e-40 169.9 297 42.1
Hma1.2p1_0956F.1_g241320 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 3.0e-40 169.9 370 41.1
vmacro18414 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 5.2e-40 169.1 357 42.3
DCAR_016607 Daucus carota HOM05D003676 ORTHO05D004262 1.2e-39 167.9 350 40.9
Gohir.A11G175400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.5e-39 167.5 338 41.4
PGR119G1864 Punica granatum HOM05D003676 ORTHO05D004262 1.5e-39 167.5 363 39.4
Rhsim10G0212200 Rhododendron simsii HOM05D003676 ORTHO05D004262 1.5e-39 167.5 356 40.7
Atru.chr3.798 Acer truncatum HOM05D003676 ORTHO05D004262 4.4e-39 166.0 345 41.2
Ah.03g148760 Amaranthus hybridus HOM05D003676 ORTHO05D004262 4.4e-39 166.0 335 38.5
CAN.G1671.14 Capsicum annuum HOM05D003676 ORTHO05D004262 4.4e-39 166.0 360 39.4
ClCG10G000750 Citrullus lanatus HOM05D003676 ORTHO05D004262 5.7e-39 165.6 323 40.6
Duzib264G0036 Durio zibethinus HOM05D003676 ORTHO05D004262 7.5e-39 165.2 342 39.8
Lj2A468T73 Lonicera japonica HOM05D003676 ORTHO05D004262 2.2e-38 163.7 355 40.6
PSO541G5658 Papaver somniferum HOM05D003676 ORTHO05D004262 2.8e-38 163.3 328 39.9
Sc07g0000980 Simmondsia chinensis HOM05D003676 ORTHO05D004262 3.7e-38 162.9 316 42.4
Gohir.D03G009400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 4.8e-38 162.5 303 41.9
Lj4A218T52 Lonicera japonica HOM05D003676 ORTHO05D004262 6.3e-38 162.2 332 41.0
PSO675G7127 Papaver somniferum HOM05D003676 ORTHO05D004262 8.3e-38 161.8 332 39.8
Aa31LG1G14730 Aethionema arabicum HOM05D003676 ORTHO05D004262 1.4e-37 161.0 307 40.4
COL.COLO4_21910 Corchorus olitorius HOM05D003676 ORTHO05D004262 1.8e-37 160.6 314 43.0
Gorai.008G063100 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.8e-37 160.6 329 40.4
Gohir.D11G182900 Gossypium hirsutum HOM05D003676 ORTHO05D004262 9.1e-37 158.3 323 42.1
Hma1.2p1_0258F.1_g104145 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 9.1e-37 158.3 419 35.8
SGA_v2.0_scaffold78G25382 Striga asiatica HOM05D003676 ORTHO05D004262 9.1e-37 158.3 290 42.8
Gohir.D12G060000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 2.7e-36 156.8 332 39.8
Gorai.003G009600 Gossypium raimondii HOM05D003676 ORTHO05D004262 2.7e-36 156.8 309 40.1
AT5G66230 Arabidopsis thaliana HOM05D003676 ORTHO05D003783 4.5e-36 156.0 313 41.2
Actinidia22976 Actinidia chinensis HOM05D003676 ORTHO05D004262 1.0e-35 154.8 275 43.3
Gohir.A12G059600 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.3e-35 154.5 336 39.3
ECA232G1625 Erigeron canadensis HOM05D003676 ORTHO05D004262 2.2e-35 153.7 326 38.7
Sc16g0002190 Simmondsia chinensis HOM05D003676 ORTHO05D004262 2.9e-35 153.3 340 39.1
Potri.007G057800 Populus trichocarpa HOM05D003676 ORTHO05D004262 3.8e-35 152.9 316 40.8
Gorai.007G194900 Gossypium raimondii HOM05D003676 ORTHO05D004262 5.0e-35 152.5 338 41.7
MSTRG.2714 Avicennia marina HOM05D003676 ORTHO05D004262 6.5e-35 152.1 362 37.6
THA.LOC104819178 Tarenaya hassleriana HOM05D003676 ORTHO05D004262 2.5e-34 150.2 312 39.7
Manes.02G104500 Manihot esculenta HOM05D003676 ORTHO05D004262 4.2e-34 149.4 291 43.3
HPP92_020902 Vanilla planifolia HOM05D003676 ORTHO05D004262 5.5e-34 149.1 309 38.5
CARHR281500 Cardamine hirsuta HOM05D003676 ORTHO05D004262 7.2e-34 148.7 305 40.0
Thhalv10004614m.g Eutrema salsugineum HOM05D003676 ORTHO05D004262 2.1e-33 147.1 300 39.0
A09p10110 Brassica napus HOM05D003676 ORTHO05D004262 2.7e-33 146.7 326 41.1
Rhsim08G0033700 Rhododendron simsii HOM05D003676 ORTHO05D004262 2.7e-33 146.7 363 40.2
TWI53G0168 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 3.6e-33 146.4 319 37.9
SHI32179 Sapria himalayana HOM05D003676 ORTHO05D004262 8.0e-33 145.2 317 39.1
Gohir.D11G183000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.8e-32 144.1 309 42.1
MBI05_g30743_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 1.8e-32 144.1 313 36.7
Gorai.007G195000 Gossypium raimondii HOM05D003676 ORTHO05D004262 8.8e-32 141.7 309 41.4
BraA09t36654Z Brassica rapa HOM05D003676 ORTHO05D004262 1.2e-31 141.4 329 39.8
Oeu063192.2 Olea europaea HOM05D003676 ORTHO05D004262 1.5e-31 141.0 289 44.3
C09p11980 Brassica napus HOM05D003676 ORTHO05D004262 3.4e-31 139.8 328 39.9
BolC9t54086H Brassica oleracea HOM05D003676 ORTHO05D004262 4.8e-30 136.0 333 39.3
TWI09G1351 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 4.8e-30 136.0 301 38.5
Carub.0008s2827 Capsella rubella HOM05D003676 ORTHO05D004262 1.1e-29 134.8 317 38.2
AL5G31630 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 1.4e-29 134.4 305 36.4
unitig_736.g22721 Utricularia gibba HOM05D003676 ORTHO05D004262 2.4e-29 133.7 309 38.2
Zm00001eb224920 Zea mays HOM05D003676 ORTHO05D004262 2.4e-29 133.7 365 34.2
SalBow3G1193 Salvia bowleyana HOM05D003676 ORTHO05D004262 2.7e-28 130.2 298 40.3
Oeu012589.1 Olea europaea HOM05D003676 ORTHO05D004262 1.0e-27 128.3 305 40.0
Nn1g05888 Nelumbo nucifera HOM05D003676 ORTHO05D004262 1.7e-27 127.5 321 33.3
Sp2g30470 Schrenkiella parvula HOM05D003676 ORTHO05D004262 3.8e-27 126.3 320 35.9
GSVIVG01018782001 Vitis vinifera HOM05D003676 ORTHO05D004262 1.5e-26 124.4 222 43.7
CDE05G2608 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 2.5e-26 123.6 298 37.6
HanXRQChr09g0256601 Helianthus annuus HOM05D003676 ORTHO05D004262 6.1e-25 119.0 272 40.4
Sp5g10990 Schrenkiella parvula HOM05D003676 ORTHO05D004262 6.1e-25 119.0 295 35.6
HanXRQChr15g0487251 Helianthus annuus HOM05D003676 ORTHO05D004262 1.4e-24 117.9 251 40.2
unitig_899.g14713 Utricularia gibba HOM05D003676 ORTHO05D004262 1.8e-24 117.5 268 37.7
Oeu048461.1 Olea europaea HOM05D003676 ORTHO05D004262 2.3e-24 117.1 295 38.0
Lsat_1_v5_gn_3_74521 Lactuca sativa HOM05D003676 ORTHO05D004262 4.0e-24 116.3 280 37.1
PGSC0003DMG400023891 Solanum tuberosum HOM05D003676 ORTHO05D004262 2.0e-23 114.0 245 42.9
Os10g0577400 Oryza sativa ssp. japonica HOM05D003676 ORTHO05D004262 2.6e-23 113.6 325 33.8
Migut.H01153 Erythranthe guttata HOM05D003676 ORTHO05D004262 6.3e-22 109.0 306 34.0
SEGI_09532 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 3.2e-21 106.7 367 32.4
SEGI_21114 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 3.2e-21 106.7 367 32.4
Solyc02g062170.3 Solanum lycopersicum HOM05D003676 ORTHO05D004262 9.2e-21 105.1 258 39.1
Lsat_1_v5_gn_4_146360 Lactuca sativa HOM05D003676 ORTHO05D004262 2.7e-20 103.6 273 35.2
Zm00001eb024930 Zea mays HOM05D003676 ORTHO05D004262 7.8e-20 102.1 340 32.6
CDE05G0776 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 2.9e-19 100.1 212 40.6
Haze_03763 Corylus avellana HOM05D003676 ORTHO05D004262 3.9e-19 99.8 152 50.0
Sopen02g013140 Solanum pennellii HOM05D003676 ORTHO05D004262 3.9e-19 99.8 258 38.8
ECA246G1385 Erigeron canadensis HOM05D003676 ORTHO05D004262 7.3e-18 95.5 216 38.4
vmacro23249 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 3.1e-16 90.1 293 30.7
vmacro23473 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 3.1e-16 90.1 293 30.7
AL8G45300 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 5.2e-16 89.4 173 43.9
ATR0149G006 Amborella trichopoda HOM05D003676 ORTHO05D004262 1.2e-15 88.2 354 31.4
Carub.0005s1760 Capsella rubella HOM05D003676 ORTHO05D004262 1.5e-15 87.8 284 33.5
AT3G51230 Arabidopsis thaliana HOM05D003676 ORTHO05D004262 2.0e-15 87.4 169 40.8
BcaNung00393 Brassica carinata HOM05D003676 ORTHO05D004262 3.4e-15 86.7 288 34.4
CARHR160810 Cardamine hirsuta HOM05D003676 ORTHO05D004262 2.2e-14 84.0 171 38.6
DCAR_025998 Daucus carota HOM05D003676 ORTHO05D004262 2.9e-14 83.6 231 33.8
BcaNung04494 Brassica carinata HOM05D003676 ORTHO05D004262 2.4e-13 80.5 253 35.2
A01p23560 Brassica napus HOM05D003676 ORTHO05D004262 9.2e-13 78.6 254 33.5
BraA01t02262Z Brassica rapa HOM05D003676 ORTHO05D004262 9.2e-13 78.6 254 33.5
BcaC09g50089 Brassica carinata HOM05D003676 ORTHO05D004262 1.6e-12 77.8 258 35.7
C01p29220 Brassica napus HOM05D003676 ORTHO05D004262 1.6e-12 77.8 258 35.7
Nitab4.5_0000188g0110 Nicotiana tabacum HOM05D003676 ORTHO05D004262 2.7e-12 77.0 250 34.0
Atru.chr1.3640 Acer truncatum HOM05D003676 ORTHO05D004262 3.5e-12 76.6 101 53.5
SEGI_24904 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 1.0e-11 75.1 267 33.3
RcHm_v2.0_Chr6g0272671 Rosa chinensis HOM05D003676 ORTHO05D004262 1.3e-11 74.7 134 44.0
Nitab4.5_0002337g0030 Nicotiana tabacum HOM05D003676 ORTHO05D004262 8.6e-11 72.0 180 40.6
HanXRQChr16g0531461 Helianthus annuus HOM05D003676 ORTHO05D004262 3.3e-10 70.1 180 32.2
Nn8g38913 Nelumbo nucifera HOM05D003676 ORTHO05D004262 2.8e-09 67.0 70 50.0
Gorai.010G060700 Gossypium raimondii HOM05D003676 ORTHO05D004262 4.7e-09 66.2 162 40.1
SMO340G0107 Selaginella moellendorffii HOM05D003676 ORTHO05D004262 6.8e-08 62.4 274 27.0
vmacro22131 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 8.9e-08 62.0 314 26.8
Zm00001eb167470 Zea mays HOM05D003676 ORTHO05D004262 2.6e-07 60.5 60 48.3
Pp3c2_17070 Physcomitrium patens HOM05D032375 ORTHO05D030105 4.4e-07 59.7 301 26.6


User provided reference genes

Program Settings