Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G105700 Phaseolus vulgaris HOM05D003331 ORTHO05D003264 1.1e-66 256.5 138 100.0
VMungo1215G2112 Vigna mungo HOM05D003331 ORTHO05D003264 5.9e-47 191.0 148 75.7
Glyma.01G163500 Glycine max HOM05D003331 ORTHO05D003264 5.7e-26 121.3 144 59.7
Cfa007016 Carpinus fangiana HOM05D003331 ORTHO05D003264 1.5e-21 106.7 156 48.1
Lj2g0025662 Lotus japonicus HOM05D003331 ORTHO05D003264 3.3e-21 105.5 173 50.3
CAN.G225.18 Capsicum annuum HOM05D000004 ORTHO05D000002 4.7e-20 101.7 164 47.6
Hma1.2p1_0561F.1_g178920 Hydrangea macrophylla HOM05D003331 ORTHO05D003264 3.1e-19 99.0 150 50.7
QL06p051331 Quercus lobata HOM05D003331 ORTHO05D003264 3.1e-19 99.0 165 45.5
Duzib147G1072 Durio zibethinus HOM05D003331 ORTHO05D003264 6.8e-19 97.8 162 45.1
CiPaw.08G127600 Carya illinoinensis HOM05D003331 ORTHO05D003264 1.5e-18 96.7 165 47.3
Nitab4.5_0001789g0110 Nicotiana tabacum HOM05D003331 ORTHO05D003264 4.4e-18 95.1 152 46.1
Thecc.01G013300 Theobroma cacao HOM05D003331 ORTHO05D003264 9.8e-18 94.0 165 44.2
Manes.02G109000 Manihot esculenta HOM05D003331 ORTHO05D003264 1.7e-17 93.2 169 45.6
Medtr5g022780 Medicago truncatula HOM05D003331 ORTHO05D003264 1.7e-17 93.2 188 42.0
Sabra05G0089800 Salix brachista HOM05D003331 ORTHO05D003264 2.2e-17 92.8 174 42.0
Duzib264G0309 Durio zibethinus HOM05D003331 ORTHO05D003264 2.9e-17 92.4 157 44.6
Psat2g152560 Pisum sativum HOM05D003331 ORTHO05D003264 4.9e-17 91.7 191 41.9
Nitab4.5_0002337g0180 Nicotiana tabacum HOM05D003331 ORTHO05D003264 6.4e-17 91.3 164 43.9
Manes.01G149900 Manihot esculenta HOM05D003331 ORTHO05D003264 1.1e-16 90.5 164 45.7
Sopen02g028310 Solanum pennellii HOM05D003331 ORTHO05D003264 1.1e-16 90.5 152 46.1
TAR625G0644 Trochodendron aralioides HOM05D003331 ORTHO05D003264 1.4e-16 90.1 170 41.2
CANSAT01G0941 Cannabis sativa HOM05D003331 ORTHO05D003264 2.4e-16 89.4 176 42.0
COL.COLO4_22478 Corchorus olitorius HOM05D003331 ORTHO05D003264 2.4e-16 89.4 156 44.2
CAN.G890.4 Capsicum annuum HOM05D003331 ORTHO05D003264 5.4e-16 88.2 152 46.1
Lalb_Chr16g0377411 Lupinus albus HOM05D003331 ORTHO05D003264 5.4e-16 88.2 168 49.4
Gohir.D11G179900 Gossypium hirsutum HOM05D003331 ORTHO05D003264 7.0e-16 87.8 157 44.6
Gorai.007G191800 Gossypium raimondii HOM05D003331 ORTHO05D003264 7.0e-16 87.8 157 44.6
Nn2g14480 Nelumbo nucifera HOM05D003331 ORTHO05D003264 7.0e-16 87.8 179 43.6
Manes.18G012121 Manihot esculenta HOM05D003331 ORTHO05D003264 9.2e-16 87.4 151 43.7
Nitab4.5_0000188g0190 Nicotiana tabacum HOM05D003331 ORTHO05D003264 1.2e-15 87.0 164 41.5
Gohir.A11G172900 Gossypium hirsutum HOM05D003331 ORTHO05D003264 2.0e-15 86.3 159 42.8
PGSC0003DMG400023897 Solanum tuberosum HOM05D003331 ORTHO05D003264 3.5e-15 85.5 141 45.4
Dinv08561 Davidia involucrata HOM05D003331 ORTHO05D003264 4.6e-15 85.1 170 43.5
Haze_03715 Corylus avellana HOM05D003331 ORTHO05D003264 6.0e-15 84.7 153 42.5
Lalb_Chr09g0321511 Lupinus albus HOM05D003331 ORTHO05D003264 7.8e-15 84.3 170 42.9
Sopen02g012950 Solanum pennellii HOM05D003331 ORTHO05D003264 7.8e-15 84.3 143 45.5
Potri.005G109500 Populus trichocarpa HOM05D003331 ORTHO05D003264 1.0e-14 84.0 178 39.9
TPR.G10558 Trifolium pratense HOM05D003331 ORTHO05D003264 1.3e-14 83.6 198 38.4
Solyc02g083520.2 Solanum lycopersicum HOM05D003331 ORTHO05D003264 2.3e-14 82.8 151 43.7
GSVIVG01009970001 Vitis vinifera HOM05D003331 ORTHO05D003264 2.3e-14 82.8 149 44.3
Actinidia02367 Actinidia chinensis HOM05D003331 ORTHO05D003264 8.6e-14 80.9 161 40.4
MBI08_g06420_MAGBIO Magnolia biondii HOM05D003331 ORTHO05D003264 8.6e-14 80.9 175 38.9
Oeu020389.1 Olea europaea HOM05D003331 ORTHO05D003264 8.6e-14 80.9 147 44.9
Peaxi162Scf00439g00042 Petunia axillaris HOM05D003331 ORTHO05D003264 1.9e-13 79.7 160 40.6
THA.LOC104819740 Tarenaya hassleriana HOM05D003331 ORTHO05D003264 1.2e-12 77.0 164 39.6
arahy.Tifrunner.gnm1.ann1.DM1BVQ Arachis hypogaea HOM05D057335 ORTHO05D003264 1.6e-12 76.6 184 39.7
arahy.Tifrunner.gnm1.ann1.FUM12Z Arachis hypogaea HOM05D057335 ORTHO05D003264 1.6e-12 76.6 184 39.7
Carub.0003s3191 Capsella rubella HOM05D003331 ORTHO05D003264 2.1e-12 76.3 155 42.6
GSVIVG01006332001 Vitis vinifera HOM05D003331 ORTHO05D003264 2.1e-12 76.3 135 40.7
Aqoxy6G02126 Aquilegia oxysepala HOM05D003331 ORTHO05D003264 2.8e-12 75.9 170 37.1
BcaB03g16550 Brassica carinata HOM05D003331 ORTHO05D003264 2.8e-12 75.9 144 41.7
COL.COLO4_26108 Corchorus olitorius HOM05D003331 ORTHO05D003264 2.8e-12 75.9 158 40.5
AL3G50780 Arabidopsis lyrata HOM05D003331 ORTHO05D003264 3.6e-12 75.5 153 43.1
Hma1.2p1_0315F.1_g122420 Hydrangea macrophylla HOM05D003331 ORTHO05D003264 6.2e-12 74.7 152 40.8
A09p11560 Brassica napus HOM05D003331 ORTHO05D003264 1.1e-11 73.9 144 41.0
Lsat_1_v5_gn_4_145080 Lactuca sativa HOM05D003331 ORTHO05D003264 1.1e-11 73.9 161 42.2
TAR628G1529 Trochodendron aralioides HOM05D003331 ORTHO05D003264 1.1e-11 73.9 150 46.0
Oeu033812.1 Olea europaea HOM05D003331 ORTHO05D003264 1.4e-11 73.6 153 41.8
Sabra05G0188500 Salix brachista HOM05D003331 ORTHO05D003264 1.4e-11 73.6 176 38.1
CARHR108160 Cardamine hirsuta HOM05D003331 ORTHO05D003264 2.3e-11 72.8 148 41.2
MD02G1125100 Malus domestica HOM05D003331 ORTHO05D003264 2.3e-11 72.8 168 39.9
Prupe.7G173300 Prunus persica HOM05D003331 ORTHO05D003264 3.1e-11 72.4 189 37.6
THA.LOC104807508 Tarenaya hassleriana HOM05D003331 ORTHO05D003264 3.1e-11 72.4 170 40.6
Gohir.A05G184500 Gossypium hirsutum HOM05D003331 ORTHO05D003264 4.0e-11 72.0 172 40.1
Solyc02g061990.3 Solanum lycopersicum HOM05D003331 ORTHO05D003264 4.0e-11 72.0 143 41.3
BcaB07g31705 Brassica carinata HOM05D003331 ORTHO05D003264 5.2e-11 71.6 144 41.0
Thecc.08G048800 Theobroma cacao HOM05D003331 ORTHO05D003264 5.2e-11 71.6 173 39.9
Gohir.D05G187300 Gossypium hirsutum HOM05D003331 ORTHO05D003264 6.8e-11 71.2 171 40.4
Potri.005G243400 Populus trichocarpa HOM05D003331 ORTHO05D003264 6.8e-11 71.2 170 37.6
Gorai.009G192500 Gossypium raimondii HOM05D003331 ORTHO05D003264 8.9e-11 70.9 171 39.8
MD15G1240800 Malus domestica HOM05D003331 ORTHO05D003264 8.9e-11 70.9 195 36.9
Manes.05G144400 Manihot esculenta HOM05D003331 ORTHO05D003264 8.9e-11 70.9 162 38.3
RcHm_v2.0_Chr2g0098731 Rosa chinensis HOM05D003331 ORTHO05D003264 1.5e-10 70.1 179 36.9
Ciclev10003845m.g Citrus clementina HOM05D003331 ORTHO05D003264 2.6e-10 69.3 173 35.8
BolC7t46566H Brassica oleracea HOM05D003331 ORTHO05D003264 3.4e-10 68.9 176 38.1
Glyma.16G123451 Glycine max HOM05D003331 ORTHO05D003264 3.4e-10 68.9 140 39.3
HanXRQChr05g0133741 Helianthus annuus HOM05D003331 ORTHO05D003264 3.4e-10 68.9 144 40.3
Aa31LG6G12860 Aethionema arabicum HOM05D003331 ORTHO05D003264 4.4e-10 68.6 176 39.2
C07p61400 Brassica napus HOM05D003331 ORTHO05D003264 5.8e-10 68.2 176 38.1
Cc07_g11170 Coffea canephora HOM05D003331 ORTHO05D003264 5.8e-10 68.2 163 38.7
Thhalv10023128m.g Eutrema salsugineum HOM05D003331 ORTHO05D003264 5.8e-10 68.2 144 39.6
HanXRQChr15g0487141 Helianthus annuus HOM05D003331 ORTHO05D003264 5.8e-10 68.2 150 41.3
AT2G17770 Arabidopsis thaliana HOM05D003331 ORTHO05D003264 7.5e-10 67.8 155 41.9
SalBow3G1427 Salvia bowleyana HOM05D003331 ORTHO05D003264 7.5e-10 67.8 139 42.4
Sed0019142 Sechium edule HOM05D003331 ORTHO05D003264 9.8e-10 67.4 136 39.7
BcaC01g00527 Brassica carinata HOM05D003331 ORTHO05D003264 1.3e-09 67.0 176 37.5
A08p21610 Brassica napus HOM05D003331 ORTHO05D003264 1.3e-09 67.0 169 37.3
BraA08t34108Z Brassica rapa HOM05D003331 ORTHO05D003264 1.3e-09 67.0 169 37.3
CiPaw.07G145300 Carya illinoinensis HOM05D003331 ORTHO05D003264 2.2e-09 66.2 151 42.4
Glyma.02G045500 Glycine max HOM05D003331 ORTHO05D003264 2.2e-09 66.2 144 41.0
Cfa013989 Carpinus fangiana HOM05D003331 ORTHO05D003264 2.9e-09 65.9 171 38.6
TWI53G1588 Tripterygium wilfordii HOM05D003331 ORTHO05D003264 2.9e-09 65.9 153 37.9
A03p63930 Brassica napus HOM05D003331 ORTHO05D003264 3.7e-09 65.5 170 37.6
BraA03t15462Z Brassica rapa HOM05D003331 ORTHO05D003264 3.7e-09 65.5 170 37.6
Sp3g31180 Schrenkiella parvula HOM05D003331 ORTHO05D003264 3.7e-09 65.5 143 37.8
C01p03140 Brassica napus HOM05D003331 ORTHO05D003264 4.9e-09 65.1 170 37.6
C03p80970 Brassica napus HOM05D003331 ORTHO05D003264 4.9e-09 65.1 176 36.9
BolC1t00299H Brassica oleracea HOM05D003331 ORTHO05D003264 4.9e-09 65.1 170 37.6
BolC3t20356H Brassica oleracea HOM05D003331 ORTHO05D003264 4.9e-09 65.1 176 37.5
Haze_22676 Corylus avellana HOM05D003331 ORTHO05D003264 4.9e-09 65.1 170 37.1
Duzib093G0576 Durio zibethinus HOM05D003331 ORTHO05D003264 4.9e-09 65.1 157 38.9
Oeu012566.1 Olea europaea HOM05D003331 ORTHO05D003264 4.9e-09 65.1 143 38.5
BcaNung00784 Brassica carinata HOM05D003331 ORTHO05D003264 6.4e-09 64.7 170 37.6
BraA09t36795Z Brassica rapa HOM05D003331 ORTHO05D003264 6.4e-09 64.7 144 38.9
Gohir.A02G173200 Gossypium hirsutum HOM05D003331 ORTHO05D003264 6.4e-09 64.7 157 38.9
Sp7g33680 Schrenkiella parvula HOM05D003331 ORTHO05D003264 8.3e-09 64.3 180 36.1
Hund16511 Selenicereus undatus HOM05D003331 ORTHO05D003264 8.3e-09 64.3 170 37.1
Gohir.D01G096500 Gossypium hirsutum HOM05D003331 ORTHO05D003264 2.4e-08 62.8 148 41.2
Rhsim08G0031400 Rhododendron simsii HOM05D003331 ORTHO05D003264 2.4e-08 62.8 164 36.6
VMungo0251G3205 Vigna mungo HOM05D003331 ORTHO05D003264 2.4e-08 62.8 140 37.1
Gohir.A01G109700 Gossypium hirsutum HOM05D003331 ORTHO05D003264 3.2e-08 62.4 146 42.5
TWI09G0177 Tripterygium wilfordii HOM05D003331 ORTHO05D003264 3.2e-08 62.4 157 38.2
Peaxi162Scf00328g00414 Petunia axillaris HOM05D003331 ORTHO05D003264 5.4e-08 61.6 163 35.6
FAN23G2926 Fragaria x ananassa HOM05D003331 ORTHO05D003264 7.1e-08 61.2 176 34.1
BcaC04g22944 Brassica carinata HOM05D003331 ORTHO05D003264 9.2e-08 60.8 144 37.5
BcaNung04885 Brassica carinata HOM05D003331 ORTHO05D003264 9.2e-08 60.8 170 35.3
C09p13610 Brassica napus HOM05D003331 ORTHO05D003264 9.2e-08 60.8 144 37.5
BolC9t54251H Brassica oleracea HOM05D003331 ORTHO05D003264 9.2e-08 60.8 144 37.5
Cpa.g.sc26.287 Carica papaya HOM05D003331 ORTHO05D003264 9.2e-08 60.8 166 36.1
A01p02810 Brassica napus HOM05D003331 ORTHO05D003264 1.2e-07 60.5 167 37.1
BraA01t00264Z Brassica rapa HOM05D003331 ORTHO05D003264 1.2e-07 60.5 167 37.1
Sabra02G0014700 Salix brachista HOM05D003331 ORTHO05D003264 1.2e-07 60.5 145 37.9
A07p03180 Brassica napus HOM05D003331 ORTHO05D003264 1.6e-07 60.1 145 39.3
C07p05420 Brassica napus HOM05D003331 ORTHO05D003264 1.6e-07 60.1 145 37.9
BraA07t28114Z Brassica rapa HOM05D003331 ORTHO05D003264 1.6e-07 60.1 145 39.3
BraA09t36802Z Brassica rapa HOM05D003331 ORTHO05D003264 1.6e-07 60.1 144 37.5
ECA232G3395 Erigeron canadensis HOM05D003331 ORTHO05D003264 1.6e-07 60.1 165 37.0
Gorai.002G122200 Gossypium raimondii HOM05D003331 ORTHO05D003264 1.6e-07 60.1 146 40.4
QL02p012465 Quercus lobata HOM05D003331 ORTHO05D003264 1.6e-07 60.1 188 34.6
AT4G35900 Arabidopsis thaliana HOM05D003331 ORTHO05D003264 2.7e-07 59.3 180 35.0
BcaNung05055 Brassica carinata HOM05D003331 ORTHO05D003264 2.7e-07 59.3 166 35.5
Potri.002G018400 Populus trichocarpa HOM05D003331 ORTHO05D003264 2.7e-07 59.3 143 37.1
Dinv40128 Davidia involucrata HOM05D003331 ORTHO05D003264 4.6e-07 58.5 84 47.6
BolC7t40942H Brassica oleracea HOM05D003331 ORTHO05D003264 6.0e-07 58.2 145 37.2
FAN26G3159 Fragaria x ananassa HOM05D003331 ORTHO05D003264 6.0e-07 58.2 185 33.5
FAN28G0558 Fragaria x ananassa HOM05D003331 ORTHO05D003264 6.0e-07 58.2 175 34.3
FvH4_1g11270 Fragaria vesca HOM05D003331 ORTHO05D003264 7.8e-07 57.8 183 33.9
FAN19G3075 Fragaria x ananassa HOM05D003331 ORTHO05D003264 7.8e-07 57.8 180 35.0
unitig_736.g22724 Utricularia gibba HOM05D003331 ORTHO05D003264 7.8e-07 57.8 135 35.6
Rhsim10G0207400 Rhododendron simsii HOM05D003331 ORTHO05D003264 1.0e-06 57.4 158 34.8
BcaC06g36320 Brassica carinata HOM05D003331 ORTHO05D003264 1.7e-06 56.6 145 38.6
CsaV3_3G000600 Cucumis sativus L. HOM05D003331 ORTHO05D003264 1.7e-06 56.6 176 33.5
Eucgr.J02482 Eucalyptus grandis HOM05D003331 ORTHO05D003264 2.3e-06 56.2 169 36.7
Thhalv10025822m.g Eutrema salsugineum HOM05D003331 ORTHO05D003264 3.0e-06 55.8 178 35.4
Carub.0007s0433 Capsella rubella HOM05D003331 ORTHO05D003264 6.6e-06 54.7 178 34.3
Gohir.D03G006700 Gossypium hirsutum HOM05D003331 ORTHO05D003264 6.6e-06 54.7 155 34.2
HPP92_022184 Vanilla planifolia HOM05D003331 ORTHO05D003264 6.6e-06 54.7 173 36.4
Actinidia17008 Actinidia chinensis HOM05D003331 ORTHO05D003264 8.6e-06 54.3 142 38.7


User provided reference genes

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