Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G102100 Phaseolus vulgaris HOM05D001391 ORTHO05D005432 3.1e-165 585.1 300 100.0
VMungo0251G0716 Vigna mungo HOM05D001391 ORTHO05D005432 1.2e-158 563.1 297 97.0
Glyma.20G025600 Glycine max HOM05D001391 ORTHO05D005432 3.7e-147 525.0 299 90.6
Lj4g0006249 Lotus japonicus HOM05D001391 ORTHO05D005432 1.5e-140 503.1 299 86.6
Ca_18800_v3 Cicer arietinum L. HOM05D001391 ORTHO05D005432 1.2e-137 493.4 297 85.2
Psat7g134560 Pisum sativum HOM05D001391 ORTHO05D005432 7.8e-137 490.7 297 85.2
arahy.Tifrunner.gnm1.ann1.52K398 Arachis hypogaea HOM05D001391 ORTHO05D005432 1.3e-136 490.0 287 88.2
arahy.Tifrunner.gnm1.ann1.G55KBL Arachis hypogaea HOM05D001391 ORTHO05D005432 5.1e-136 488.0 286 88.1
TPR.G34031 Trifolium pratense HOM05D001391 ORTHO05D005432 5.6e-135 484.6 297 83.2
Medtr4g083100 Medicago truncatula HOM05D001391 ORTHO05D005432 1.3e-134 483.4 292 84.9
Manes.01G028100 Manihot esculenta HOM05D001391 ORTHO05D005432 5.4e-130 468.0 300 79.7
Lalb_Chr05g0219941 Lupinus albus HOM05D001391 ORTHO05D005432 9.3e-130 467.2 298 81.9
Sabra10G0120500 Salix brachista HOM05D001391 ORTHO05D005432 3.5e-129 465.3 301 80.1
Ciclev10031905m.g Citrus clementina HOM05D001391 ORTHO05D005432 1.7e-128 463.0 280 83.2
QL03p071791 Quercus lobata HOM05D001391 ORTHO05D005432 6.6e-128 461.1 296 80.1
Potri.010G158700 Populus trichocarpa HOM05D001391 ORTHO05D005432 1.5e-127 459.9 300 79.0
QL03p071836 Quercus lobata HOM05D001391 ORTHO05D005432 1.3e-126 456.8 301 78.4
QL03p072323 Quercus lobata HOM05D001391 ORTHO05D005432 2.1e-126 456.1 300 78.3
CiPaw.06G092300 Carya illinoinensis HOM05D001391 ORTHO05D005432 2.8e-126 455.7 280 81.4
FvH4_4g30104 Fragaria vesca HOM05D001391 ORTHO05D005432 4.8e-126 454.9 276 83.0
FAN07G1596 Fragaria x ananassa HOM05D001391 ORTHO05D005432 4.8e-126 454.9 277 82.3
FAN22G1389 Fragaria x ananassa HOM05D001391 ORTHO05D005432 1.1e-125 453.8 276 83.0
QL03p071994 Quercus lobata HOM05D001391 ORTHO05D005432 1.1e-125 453.8 301 77.7
FAN17G2247 Fragaria x ananassa HOM05D001391 ORTHO05D002605 1.8e-125 453.0 280 81.1
QL03p072348 Quercus lobata HOM05D001391 ORTHO05D005432 1.8e-125 453.0 298 78.5
MD16G1061600 Malus domestica HOM05D001391 ORTHO05D005432 3.1e-125 452.2 287 79.4
RcHm_v2.0_Chr4g0438441 Rosa chinensis HOM05D001391 ORTHO05D005432 3.1e-125 452.2 271 84.1
Prupe.1G286500 Prunus persica HOM05D001391 ORTHO05D005432 4.0e-125 451.8 293 79.2
Eucgr.B03154 Eucalyptus grandis HOM05D001391 ORTHO05D005432 9.0e-125 450.7 283 80.6
PGR102G1705 Punica granatum HOM05D001391 ORTHO05D005432 2.6e-124 449.1 269 82.9
QL06p022506 Quercus lobata HOM05D001391 ORTHO05D005432 1.3e-123 446.8 269 83.6
Atru.chr11.1633 Acer truncatum HOM05D001391 ORTHO05D005432 1.7e-123 446.4 287 78.7
Lj3C1030G23 Lonicera japonica HOM05D001391 ORTHO05D005432 6.4e-123 444.5 280 80.0
SGA_v2.0_scaffold16G07780 Striga asiatica HOM05D001391 ORTHO05D005432 8.4e-123 444.1 300 75.0
MELO3C011425.2 Cucumis melo HOM05D001391 ORTHO05D005432 1.1e-122 443.7 287 78.4
TWI31G1273 Tripterygium wilfordii HOM05D001391 ORTHO05D005432 1.4e-122 443.4 300 75.7
GSVIVG01012214001 Vitis vinifera HOM05D001391 ORTHO05D005432 1.4e-122 443.4 305 75.1
QL03p072246 Quercus lobata HOM05D001391 ORTHO05D005432 2.4e-122 442.6 328 72.9
Sed0003297 Sechium edule HOM05D001391 ORTHO05D005432 4.2e-122 441.8 291 77.0
TAR629G1471 Trochodendron aralioides HOM05D001391 ORTHO05D005432 5.5e-122 441.4 298 73.5
TAR629G2660 Trochodendron aralioides HOM05D001391 ORTHO05D005432 5.5e-122 441.4 298 73.5
Sed0027135 Sechium edule HOM05D001391 ORTHO05D005432 7.1e-122 441.0 287 78.4
THA.LOC104824058 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 7.1e-122 441.0 301 75.4
Dinv16729 Davidia involucrata HOM05D001391 ORTHO05D005432 1.2e-121 440.3 296 76.0
Thecc.02G331500 Theobroma cacao HOM05D001391 ORTHO05D005432 1.2e-121 440.3 256 85.5
MD13G1063100 Malus domestica HOM05D001391 ORTHO05D005432 1.6e-121 439.9 277 81.2
QL03p071709 Quercus lobata HOM05D001391 ORTHO05D005432 2.7e-121 439.1 303 75.6
Haze_11913 Corylus avellana HOM05D001391 ORTHO05D005432 3.5e-121 438.7 257 84.0
Carub.0005s0265 Capsella rubella HOM05D001391 ORTHO05D005432 4.6e-121 438.3 301 75.7
CDE05G0079 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 1.8e-120 436.4 305 71.8
Duzib248G0196 Durio zibethinus HOM05D001391 ORTHO05D005432 3.0e-120 435.6 284 77.8
PGSC0003DMG400028375 Solanum tuberosum HOM05D001391 ORTHO05D005432 3.0e-120 435.6 295 73.6
Sp2g14420 Schrenkiella parvula HOM05D001391 ORTHO05D005432 3.9e-120 435.3 302 74.5
Sopen05g007170 Solanum pennellii HOM05D001391 ORTHO05D005432 3.9e-120 435.3 282 76.2
AT2G03510 Arabidopsis thaliana HOM05D001391 ORTHO05D005432 5.1e-120 434.9 301 74.8
BcaB07g30667 Brassica carinata HOM05D001391 ORTHO05D005432 8.7e-120 434.1 301 75.4
Cc11_g12040 Coffea canephora HOM05D001391 ORTHO05D005432 8.7e-120 434.1 307 73.3
HanXRQChr15g0477081 Helianthus annuus HOM05D001391 ORTHO05D005432 8.7e-120 434.1 294 73.1
CAN.G616.39 Capsicum annuum HOM05D001391 ORTHO05D005432 1.1e-119 433.7 280 76.8
COL.COLO4_27891 Corchorus olitorius HOM05D001391 ORTHO05D005432 1.5e-119 433.3 287 76.0
CSS0007431 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 3.3e-119 432.2 277 79.4
CSS0028231 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 3.3e-119 432.2 277 79.4
Aa31LG2G7090 Aethionema arabicum HOM05D001391 ORTHO05D005432 9.6e-119 430.6 301 73.8
CARHR145860 Cardamine hirsuta HOM05D001391 ORTHO05D005432 1.3e-118 430.3 301 73.8
AL5G13280 Arabidopsis lyrata HOM05D001391 ORTHO05D005432 1.6e-118 429.9 301 73.8
DCAR_007192 Daucus carota HOM05D001391 ORTHO05D005432 1.6e-118 429.9 290 76.6
DCAR_030039 Daucus carota HOM05D001391 ORTHO05D005432 1.6e-118 429.9 302 73.8
THA.LOC104805193 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 1.6e-118 429.9 295 75.9
BcaC04g21485 Brassica carinata HOM05D001391 ORTHO05D005432 2.1e-118 429.5 301 73.8
C09p31260 Brassica napus HOM05D001391 ORTHO05D005432 2.1e-118 429.5 301 73.8
BolC9t55982H Brassica oleracea HOM05D001391 ORTHO05D005432 2.1e-118 429.5 301 73.8
A09p24460 Brassica napus HOM05D001391 ORTHO05D005432 2.8e-118 429.1 287 76.3
BraA09t38039Z Brassica rapa HOM05D001391 ORTHO05D005432 2.8e-118 429.1 287 76.3
RcHm_v2.0_Chr4g0438461 Rosa chinensis HOM05D001391 ORTHO05D005432 3.7e-118 428.7 269 79.9
PSO017G5650 Papaver somniferum HOM05D001391 ORTHO05D005432 4.8e-118 428.3 301 72.1
Thhalv10004477m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 6.2e-118 427.9 301 73.4
ECA246G4329 Erigeron canadensis HOM05D001391 ORTHO05D005432 1.1e-117 427.2 293 73.0
CANSAT64G0915 Cannabis sativa HOM05D001391 ORTHO05D005432 1.8e-117 426.4 286 75.2
HanXRQChr12g0375271 Helianthus annuus HOM05D001391 ORTHO05D005432 2.4e-117 426.0 293 72.7
PSO478G1327 Papaver somniferum HOM05D001391 ORTHO05D005432 2.4e-117 426.0 301 71.8
BcaC03g17224 Brassica carinata HOM05D001391 ORTHO05D005432 5.3e-117 424.9 294 74.1
C02p51560 Brassica napus HOM05D001391 ORTHO05D005432 5.3e-117 424.9 294 74.1
BolC2t11243H Brassica oleracea HOM05D001391 ORTHO05D005432 5.3e-117 424.9 294 74.1
Zm00001eb393170 Zea mays HOM05D001391 ORTHO05D005432 5.3e-117 424.9 295 74.2
Oeu048144.1 Olea europaea HOM05D001391 ORTHO05D005432 1.5e-116 423.3 262 80.5
Nitab4.5_0000231g0390 Nicotiana tabacum HOM05D001391 ORTHO05D005432 2.0e-116 422.9 286 75.2
Nitab4.5_0001487g0070 Nicotiana tabacum HOM05D001391 ORTHO05D005432 2.0e-116 422.9 286 75.2
ClCG08G010360 Citrullus lanatus HOM05D001391 ORTHO05D005432 2.6e-116 422.5 303 72.3
Actinidia16169 Actinidia chinensis HOM05D001391 ORTHO05D005432 4.5e-116 421.8 262 80.2
ATR0064G010 Amborella trichopoda HOM05D001391 ORTHO05D005432 5.8e-116 421.4 247 82.6
unitig_22.g6493 Utricularia gibba HOM05D001391 ORTHO05D005432 5.8e-116 421.4 303 70.6
Dinv34072 Davidia involucrata HOM05D001391 ORTHO05D005432 1.7e-115 419.9 280 75.7
QL03p071737 Quercus lobata HOM05D001391 ORTHO05D005432 8.4e-115 417.5 305 72.8
Ah.02g126880 Amaranthus hybridus HOM05D001391 ORTHO05D005432 3.2e-114 415.6 297 72.4
Aqoxy3G03632 Aquilegia oxysepala HOM05D001391 ORTHO05D005432 3.2e-114 415.6 280 73.9
Gorai.013G093700 Gossypium raimondii HOM05D001391 ORTHO05D005432 7.1e-114 414.5 293 72.7
EL10Ac6g14993 Beta vulgaris HOM05D001391 ORTHO05D005432 1.8e-112 409.8 250 80.4
AUR62003104 Chenopodium quinoa HOM05D001391 ORTHO05D005432 1.8e-112 409.8 252 79.8
Gohir.D13G081800 Gossypium hirsutum HOM05D001391 ORTHO05D005432 2.3e-112 409.5 293 72.0
Lsat_1_v5_gn_3_53800 Lactuca sativa HOM05D001391 ORTHO05D005432 3.9e-112 408.7 293 71.0
PSO478G2440 Papaver somniferum HOM05D001391 ORTHO05D005432 8.7e-112 407.5 289 71.6
HPP92_020445 Vanilla planifolia HOM05D001391 ORTHO05D005432 2.4e-109 399.4 258 76.0
Zm00001eb020150 Zea mays HOM05D001391 ORTHO05D005432 2.0e-108 396.4 268 75.0
SMO364G0146 Selaginella moellendorffii HOM05D001391 ORTHO05D005432 2.6e-108 396.0 249 78.3
Sc11g0002420 Simmondsia chinensis HOM05D001391 ORTHO05D005432 4.5e-108 395.2 290 70.0
TAR622G0883 Trochodendron aralioides HOM05D001391 ORTHO05D005432 7.6e-108 394.4 286 73.8
Glyma.07G225600 Glycine max HOM05D001391 ORTHO05D005432 1.4e-106 390.2 216 92.6
CsaV3_6G032550 Cucumis sativus L. HOM05D001391 ORTHO05D005432 4.2e-106 388.7 287 71.1
Pp3c1_8060 Physcomitrium patens HOM05D001391 ORTHO05D005432 2.1e-105 386.3 273 70.7
QL03p071961 Quercus lobata HOM05D001391 ORTHO05D005432 2.1e-105 386.3 263 75.7
Eucgr.B03155 Eucalyptus grandis HOM05D001391 ORTHO05D005432 6.1e-105 384.8 241 80.1
Peaxi162Scf00175g00121 Petunia axillaris HOM05D001391 ORTHO05D005432 2.3e-104 382.9 246 76.0
Sabra08G0071900 Salix brachista HOM05D001391 ORTHO05D005432 9.7e-103 377.5 314 66.6
Pp3c2_37740 Physcomitrium patens HOM05D001391 ORTHO05D005432 1.6e-102 376.7 301 65.4
CsaV3_6G033630 Cucumis sativus L. HOM05D001391 ORTHO05D005432 2.2e-102 376.3 308 66.2
Hund05837 Selenicereus undatus HOM05D001391 ORTHO05D005432 8.2e-102 374.4 262 72.1
AagrBONN_evm.TU.Sc2ySwM_228.3454 Anthoceros agrestis HOM05D001391 ORTHO05D005432 4.1e-101 372.1 300 64.3
Mapoly0041s0056 Marchantia polymorpha HOM05D001391 ORTHO05D005432 4.1e-101 372.1 292 65.4
Migut.L01194 Erythranthe guttata HOM05D001391 ORTHO05D005432 1.5e-100 370.2 262 72.1
vmacro01316 Vaccinium macrocarpon HOM05D001391 ORTHO05D005432 4.2e-98 362.1 309 63.4
Lj6C779T14 Lonicera japonica HOM05D001391 ORTHO05D005432 2.1e-97 359.8 348 57.8
CBR_g22084 Chara braunii HOM05D001391 ORTHO05D005432 2.0e-95 353.2 285 63.9
Thecc.02G331800 Theobroma cacao HOM05D001391 ORTHO05D005432 6.9e-93 344.7 229 75.1
Cpa.g.sc1.121 Carica papaya HOM05D001391 ORTHO05D005432 1.5e-92 343.6 301 64.8
Gohir.A13G082200 Gossypium hirsutum HOM05D001391 ORTHO05D005432 1.9e-90 336.7 219 75.8
CDE02G0606 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 6.3e-86 321.6 207 73.4
Thhalv10022792m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 4.1e-85 318.9 253 65.6
Thhalv10022979m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 4.1e-85 318.9 253 65.6
MBI16_g24179_MAGBIO Magnolia biondii HOM05D001391 ORTHO05D005432 4.5e-84 315.5 295 59.0
Nn4g23419 Nelumbo nucifera HOM05D001391 ORTHO05D005432 6.5e-83 311.6 300 58.0
Solyc05g012340.4 Solanum lycopersicum HOM05D001391 ORTHO05D005432 8.8e-80 301.2 186 80.6
AUR62007921 Chenopodium quinoa HOM05D001391 ORTHO05D005432 7.5e-79 298.1 250 62.4
Rhsim12G0074900 Rhododendron simsii HOM05D001391 ORTHO05D005432 9.7e-79 297.7 247 65.2
Eucgr.B03159 Eucalyptus grandis HOM05D001391 ORTHO05D005432 8.2e-78 294.7 197 77.7
Hund25181 Selenicereus undatus HOM05D001391 ORTHO05D005432 2.0e-60 236.9 158 71.5
CSS0036366 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 5.9e-60 235.3 181 70.2
Nn3g17437 Nelumbo nucifera HOM05D001391 ORTHO05D005432 2.3e-59 233.4 296 49.0
Gohir.D12G164650 Gossypium hirsutum HOM05D001391 ORTHO05D005432 1.4e-53 214.2 216 58.3
HanXRQChr08g0223901 Helianthus annuus HOM05D001391 ORTHO05D005432 2.4e-45 186.8 129 75.2
Gorai.008G177300 Gossypium raimondii HOM05D001391 ORTHO05D005432 8.9e-40 168.3 121 74.4
CSS0025210 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 2.5e-34 150.2 126 60.3
QL03p071882 Quercus lobata HOM05D001391 ORTHO05D005432 2.1e-33 147.1 117 72.6
Gorai.008G177400 Gossypium raimondii HOM05D001391 ORTHO05D005432 6.2e-33 145.6 79 84.8
QL01p050908 Quercus lobata HOM05D001391 ORTHO05D005432 4.1e-29 132.9 141 53.9
Mapoly0004s0019 Marchantia polymorpha HOM05D001391 ORTHO05D005432 6.6e-27 125.6 266 31.2
BcaB07g30295 Brassica carinata HOM05D001391 ORTHO05D005432 4.9e-22 109.4 79 79.7
Os03g0421400 Oryza sativa ssp. japonica HOM05D001391 ORTHO05D005432 1.4e-21 107.8 88 61.4
SEGI_10839 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.5e-18 97.8 100 49.0
SEGI_38290 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 7.3e-18 95.5 55 74.5
SEGI_41081 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.4e-16 90.5 72 62.5
QL01p050911 Quercus lobata HOM05D001391 ORTHO05D005432 3.1e-16 90.1 73 68.5
SEGI_06703 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 5.8e-15 85.9 72 58.3
SEGI_37700 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.1e-12 77.4 63 60.3
MD16G1164500 Malus domestica HOM05D001391 ORTHO05D005432 2.7e-12 77.0 43 74.4
Hma1.2p1_3404F.1_g335810 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 2.3e-11 73.9 74 63.5
Gohir.A13G082366 Gossypium hirsutum HOM05D001391 ORTHO05D005432 1.7e-06 57.8 56 55.4


User provided reference genes

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