Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G101900 Phaseolus vulgaris HOM05D005523 ORTHO05D007089 0.0e+00 1308.9 652 100.0
Glyma.20G025400 Glycine max HOM05D005523 ORTHO05D007089 0.0e+00 1097.0 656 83.8
Medtr4g083180 Medicago truncatula HOM05D005523 ORTHO05D007089 2.4e-292 1008.4 650 78.0
Psat7g133840 Pisum sativum HOM05D005523 ORTHO05D007089 1.5e-286 989.2 650 76.8
Lj4g0005251 Lotus japonicus HOM05D005523 ORTHO05D007089 8.4e-285 983.4 650 76.3
Ca_18798_v3 Cicer arietinum L. HOM05D005523 ORTHO05D007089 3.3e-281 971.5 647 76.2
TPR.G34024 Trifolium pratense HOM05D005523 ORTHO05D007089 1.8e-279 965.7 650 74.8
Lalb_Chr05g0219911 Lupinus albus HOM05D005523 ORTHO05D007089 1.4e-276 956.1 667 73.5
arahy.Tifrunner.gnm1.ann1.5T11RT Arachis hypogaea HOM05D005523 ORTHO05D007089 3.3e-265 918.3 669 71.2
arahy.Tifrunner.gnm1.ann1.1A68HA Arachis hypogaea HOM05D005523 ORTHO05D007089 4.0e-263 911.4 660 71.5
Ciclev10033727m.g Citrus clementina HOM05D005523 ORTHO05D007089 9.7e-241 837.0 653 65.5
QL03p074443 Quercus lobata HOM05D005523 ORTHO05D007089 2.4e-239 832.4 691 63.7
CiPaw.05G124500 Carya illinoinensis HOM05D005523 ORTHO05D007089 3.4e-238 828.6 686 63.6
QL03p074024 Quercus lobata HOM05D005523 ORTHO05D007089 1.0e-237 827.0 691 63.2
Potri.010G157700 Populus trichocarpa HOM05D005523 ORTHO05D007089 1.3e-232 810.1 669 63.1
Thecc.02G329500 Theobroma cacao HOM05D005523 ORTHO05D007089 1.4e-231 806.6 658 64.4
Atru.chr11.1618 Acer truncatum HOM05D005523 ORTHO05D007089 4.1e-231 805.1 649 64.3
MD13G1061700 Malus domestica HOM05D005523 ORTHO05D007089 6.5e-229 797.7 673 61.8
GSVIVG01012228001 Vitis vinifera HOM05D005523 ORTHO05D007089 6.5e-229 797.7 658 62.9
CANSAT64G1787 Cannabis sativa HOM05D005523 ORTHO05D007089 9.4e-228 793.9 674 61.7
RcHm_v2.0_Chr4g0438141 Rosa chinensis HOM05D005523 ORTHO05D007089 2.7e-227 792.3 646 63.8
TWI79G0260 Tripterygium wilfordii HOM05D005523 ORTHO05D007089 2.7e-227 792.3 674 61.7
FvH4_4g29880 Fragaria vesca HOM05D005523 ORTHO05D007089 1.1e-225 786.9 645 62.6
Prupe.1G288300 Prunus persica HOM05D005523 ORTHO05D007089 2.0e-225 786.2 674 61.7
FAN22G0589 Fragaria x ananassa HOM05D005523 ORTHO05D007089 9.7e-225 783.9 646 62.4
COL.COLO4_27873 Corchorus olitorius HOM05D005523 ORTHO05D007089 1.3e-224 783.5 658 63.7
Gorai.008G176600 Gossypium raimondii HOM05D005523 ORTHO05D007089 3.7e-224 781.9 662 62.8
Gohir.D12G164000 Gossypium hirsutum HOM05D005523 ORTHO05D007089 8.2e-224 780.8 662 62.5
CsaV3_5G033360 Cucumis sativus L. HOM05D005523 ORTHO05D007089 1.8e-223 779.6 679 60.7
Sed0024899 Sechium edule HOM05D005523 ORTHO05D007089 2.4e-223 779.2 671 62.6
FAN07G2138 Fragaria x ananassa HOM05D005523 ORTHO05D007089 7.0e-223 777.7 646 62.4
FAN17G1793 Fragaria x ananassa HOM05D005523 ORTHO05D007089 1.2e-222 776.9 670 60.7
MD16G1060200 Malus domestica HOM05D005523 ORTHO05D007089 1.6e-222 776.5 675 60.9
FAN12G2921 Fragaria x ananassa HOM05D005523 ORTHO05D007089 3.8e-221 771.9 681 59.3
MELO3C012156.2 Cucumis melo HOM05D005523 ORTHO05D007089 5.0e-221 771.5 687 59.8
Cfa008872 Carpinus fangiana HOM05D005523 ORTHO05D007089 9.8e-217 757.3 649 60.9
Solyc05g012200.3 Solanum lycopersicum HOM05D005523 ORTHO05D007089 8.3e-216 754.2 662 61.5
Duzib251G0966 Durio zibethinus HOM05D005523 ORTHO05D007089 1.1e-215 753.8 657 61.5
PGSC0003DMG400028314 Solanum tuberosum HOM05D005523 ORTHO05D007089 1.4e-215 753.4 662 61.8
Haze_11899 Corylus avellana HOM05D005523 ORTHO05D007089 2.4e-215 752.7 643 61.7
Nn4g23450 Nelumbo nucifera HOM05D005523 ORTHO05D007089 3.1e-215 752.3 719 57.6
Peaxi162Scf00175g00035 Petunia axillaris HOM05D005523 ORTHO05D007089 1.0e-213 747.3 658 60.5
Aqoxy3G00520 Aquilegia oxysepala HOM05D005523 ORTHO05D007089 5.0e-213 745.0 708 57.5
SalBow2G2481 Salvia bowleyana HOM05D005523 ORTHO05D007089 1.1e-212 743.8 678 57.7
CAN.G707.6 Capsicum annuum HOM05D005523 ORTHO05D007089 2.1e-211 739.6 667 59.2
Migut.L01183 Erythranthe guttata HOM05D005523 ORTHO05D007089 3.6e-211 738.8 665 58.2
PSO478G5042 Papaver somniferum HOM05D005523 ORTHO05D007089 4.7e-211 738.4 669 58.7
Cc11_g11910 Coffea canephora HOM05D005523 ORTHO05D007089 3.0e-210 735.7 683 57.4
Rhsim02G0238300 Rhododendron simsii HOM05D005523 ORTHO05D007089 1.5e-209 733.4 719 55.1
HanXRQChr17g0552771 Helianthus annuus HOM05D005523 ORTHO05D007089 2.0e-209 733.0 655 59.4
PSO017G3752 Papaver somniferum HOM05D005523 ORTHO05D007089 4.4e-209 731.9 669 58.1
Manes.05G109800 Manihot esculenta HOM05D005523 ORTHO05D007089 3.7e-208 728.8 631 60.7
ECA234G2689 Erigeron canadensis HOM05D005523 ORTHO05D007089 1.1e-207 727.2 652 58.6
C07p34020 Brassica napus HOM05D005523 ORTHO05D007089 2.4e-207 726.1 649 59.2
EL10Ac6g15006 Beta vulgaris HOM05D005523 ORTHO05D007089 5.4e-207 724.9 671 56.5
Hund25171 Selenicereus undatus HOM05D005523 ORTHO05D007089 9.1e-207 724.2 666 57.5
BolC7t43916H Brassica oleracea HOM05D005523 ORTHO05D007089 1.2e-206 723.8 651 59.1
A06p43010 Brassica napus HOM05D005523 ORTHO05D007089 2.0e-206 723.0 649 59.3
Sp2g14490 Schrenkiella parvula HOM05D005523 ORTHO05D007089 1.9e-204 716.5 650 58.2
Nitab4.5_0007061g0020 Nicotiana tabacum HOM05D005523 ORTHO05D007089 4.2e-204 715.3 661 59.0
Carub.0005s0279 Capsella rubella HOM05D005523 ORTHO05D007089 1.2e-203 713.8 655 58.8
Thhalv10003838m.g Eutrema salsugineum HOM05D005523 ORTHO05D007089 1.2e-203 713.8 652 58.7
THA.LOC104805203 Tarenaya hassleriana HOM05D005523 ORTHO05D007089 1.2e-203 713.8 648 58.2
AL5G13440 Arabidopsis lyrata HOM05D005523 ORTHO05D007089 2.8e-203 712.6 656 58.1
CARHR145990 Cardamine hirsuta HOM05D005523 ORTHO05D007089 1.8e-202 709.9 656 58.4
AT2G03667 Arabidopsis thaliana HOM05D005523 ORTHO05D007089 6.8e-202 708.0 653 58.5
Sopen05g007030 Solanum pennellii HOM05D005523 ORTHO05D007089 8.9e-202 707.6 562 65.8
Lsat_1_v5_gn_4_11761 Lactuca sativa HOM05D005523 ORTHO05D007089 2.0e-201 706.4 653 58.2
AUR62003091 Chenopodium quinoa HOM05D005523 ORTHO05D007089 9.8e-201 704.1 634 57.3
DCAR_026677 Daucus carota HOM05D005523 ORTHO05D007089 2.9e-200 702.6 612 60.6
Aa31LG2G7010 Aethionema arabicum HOM05D005523 ORTHO05D007089 7.0e-199 698.0 636 58.2
Oeu021803.1 Olea europaea HOM05D005523 ORTHO05D007089 1.0e-194 684.1 625 57.8
vmacro10430 Vaccinium macrocarpon HOM05D005523 ORTHO05D007089 2.6e-193 679.5 684 55.3
Rhsim09G0126700 Rhododendron simsii HOM05D005523 ORTHO05D007089 3.4e-193 679.1 662 56.6
BcaB07g30661 Brassica carinata HOM05D005523 ORTHO05D007089 2.9e-192 676.0 666 55.6
Cc03_g11190 Coffea canephora HOM05D005523 ORTHO05D007089 1.1e-191 674.1 550 62.5
PGR119G1690 Punica granatum HOM05D005523 ORTHO05D007089 1.7e-189 666.8 649 56.1
Nitab4.5_0000231g0170 Nicotiana tabacum HOM05D005523 ORTHO05D007089 2.5e-188 662.9 659 56.0
HPP92_001825 Vanilla planifolia HOM05D005523 ORTHO05D007089 1.6e-187 660.2 672 53.4
Sc14g0007970 Simmondsia chinensis HOM05D005523 ORTHO05D007089 1.1e-186 657.5 623 54.9
AUR62007908 Chenopodium quinoa HOM05D005523 ORTHO05D007089 4.4e-185 652.1 627 54.1
Lj6A778G61 Lonicera japonica HOM05D005523 ORTHO05D007089 6.0e-182 641.7 749 49.7
VMungo0251G1186 Vigna mungo HOM05D005523 ORTHO05D007089 1.3e-181 640.6 376 84.8
SGA_v2.0_scaffold16G07795 Striga asiatica HOM05D005523 ORTHO05D007089 1.1e-180 637.5 661 51.3
Zm00001eb029510 Zea mays HOM05D005523 ORTHO05D007089 5.2e-170 602.1 555 57.1
unitig_26.g10286 Utricularia gibba HOM05D005523 ORTHO05D007089 9.3e-159 564.7 656 50.3
VMungo0251G0731 Vigna mungo HOM05D005523 ORTHO05D007089 1.3e-157 560.8 293 95.2
CSS0034602 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 6.6e-157 558.5 418 67.2
Pp3c13_5080 Physcomitrium patens HOM05D005523 ORTHO05D007089 1.9e-156 557.0 686 47.2
TAR374G1461 Trochodendron aralioides HOM05D005523 ORTHO05D007089 1.8e-154 550.4 438 65.1
Eucgr.G02442 Eucalyptus grandis HOM05D005523 ORTHO05D007089 5.5e-151 538.9 434 62.7
SMO364G0955 Selaginella moellendorffii HOM05D005523 ORTHO05D007089 8.7e-149 531.6 618 49.7
Gohir.A12G160700 Gossypium hirsutum HOM05D005523 ORTHO05D007089 9.3e-143 511.5 401 65.8
AagrBONN_evm.TU.Sc2ySwM_228.676 Anthoceros agrestis HOM05D005523 ORTHO05D007089 7.9e-142 508.4 653 46.1
MBI19_g25293_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 1.1e-132 478.0 646 44.6
Mapoly0013s0146 Marchantia polymorpha HOM05D005523 ORTHO05D007089 2.0e-121 440.7 492 48.4
Oeu021804.1 Olea europaea HOM05D005523 ORTHO05D007089 2.0e-116 424.1 468 50.4
ClCG05G023660 Citrullus lanatus HOM05D005523 ORTHO05D007089 9.4e-103 378.6 466 47.0
Actinidia28650 Actinidia chinensis HOM05D005523 ORTHO05D007089 1.6e-102 377.9 469 49.9
ATR0177G042 Amborella trichopoda HOM05D005523 ORTHO05D007089 2.2e-96 357.5 560 41.1
Actinidia36738 Actinidia chinensis HOM05D005523 ORTHO05D007089 5.0e-96 356.3 261 71.3
CDE10G0904 Ceratophyllum demersum HOM05D005523 ORTHO05D007089 2.7e-94 350.5 264 70.1
MBI19_g44450_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 9.5e-87 325.5 253 68.8
BcaC06g31164 Brassica carinata HOM05D005523 ORTHO05D006344 7.5e-84 315.8 195 77.9
PRCOL_00003408 Prasinoderma coloniale HOM05D005523 ORTHO05D007089 4.1e-82 310.1 691 32.6
CBR_g50115 Chara braunii HOM05D005523 ORTHO05D007089 1.3e-80 305.1 396 43.4
BcaC04g21469 Brassica carinata HOM05D000070 ORTHO05D006344 4.7e-78 296.6 354 50.8
Actinidia14169 Actinidia chinensis HOM05D005523 ORTHO05D007089 8.3e-75 285.8 187 72.7
RcHm_v2.0_Chr7g0182531 Rosa chinensis HOM05D005523 ORTHO05D007089 4.1e-74 283.5 173 81.5
Actinidia12916 Actinidia chinensis HOM05D005523 ORTHO05D007089 2.3e-72 277.7 653 34.5
BolC9t56002H Brassica oleracea HOM05D005523 ORTHO05D007089 2.8e-70 270.8 264 56.1
Lsat_1_v5_gn_7_112061 Lactuca sativa HOM05D005523 ORTHO05D007089 6.2e-70 269.6 312 50.6
C09p31430 Brassica napus HOM05D000070 ORTHO05D006344 2.3e-69 267.7 264 55.7
Lsat_1_v5_gn_5_70240 Lactuca sativa HOM05D005523 ORTHO05D007089 2.6e-68 264.2 183 72.7
Lsat_1_v5_gn_5_143020 Lactuca sativa HOM05D005523 ORTHO05D007089 2.4e-66 257.7 183 67.2
Cre07.g321050 Chlamydomonas reinhardtii HOM05D005523 ORTHO05D007089 1.6e-65 255.0 363 41.6
Cpa.g.sc1.134 Carica papaya HOM05D005523 ORTHO05D007089 2.3e-64 251.1 150 77.3
CDE10G0400 Ceratophyllum demersum HOM05D005523 ORTHO05D007089 4.3e-63 246.9 352 42.0
BcaB03g12091 Brassica carinata HOM05D005523 ORTHO05D007089 7.1e-50 203.0 130 72.3
Cpa.g.sc1.132 Carica papaya HOM05D005523 ORTHO05D007089 1.3e-48 198.7 464 33.6
CSS0024141 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 1.7e-35 155.2 215 44.2
TAR374G1311 Trochodendron aralioides HOM05D005523 ORTHO05D007089 4.9e-35 153.7 208 46.6
Os12g0574900 Oryza sativa ssp. japonica HOM05D005523 ORTHO05D007089 6.7e-32 143.3 206 43.7
CSS0004547 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 4.9e-27 127.1 110 58.2
Lsat_1_v5_gn_7_82480 Lactuca sativa HOM05D005523 ORTHO05D007089 3.9e-24 117.5 151 49.7
CSS0023178 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 5.1e-24 117.1 110 54.5
SEGI_10872 Sequoiadendron giganteum HOM05D005523 ORTHO05D007089 4.1e-21 107.5 116 49.1
EL10Ac6g15009 Beta vulgaris HOM05D005523 ORTHO05D007089 9.0e-21 106.3 229 30.6
CSS0028074 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D026295 1.3e-16 92.4 110 45.5
HanXRQChr15g0470871 Helianthus annuus HOM05D005523 ORTHO05D007089 2.2e-14 85.1 83 49.4
Cpa.g.sc1.135 Carica papaya HOM05D005523 ORTHO05D007089 1.4e-13 82.4 50 88.0
MBI19_g26864_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 6.9e-13 80.1 201 32.3
CAN.G553.8 Capsicum annuum HOM05D001766 ORTHO05D043404 7.7e-12 76.6 82 45.1
CAN.G602.9 Capsicum annuum HOM05D005523 ORTHO05D007089 7.7e-12 76.6 63 58.7
CiPaw.04G124200 Carya illinoinensis HOM05D005523 ORTHO05D007089 3.6e-09 67.8 72 48.6
HanXRQChr16g0520621 Helianthus annuus HOM05D005523 ORTHO05D007089 2.6e-07 61.6 59 55.9


User provided reference genes

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