Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G101400 Phaseolus vulgaris HOM05D004453 ORTHO05D005375 2.6e-133 478.8 250 100.0
Glyma.20G024900 Glycine max HOM05D004453 ORTHO05D005375 6.6e-113 411.0 250 86.0
Glyma.07G225000 Glycine max HOM05D004453 ORTHO05D005375 1.5e-109 399.8 251 83.3
VMungo0251G3504 Vigna mungo HOM05D004453 ORTHO05D005375 7.3e-104 380.9 214 91.6
Lj4g0023466 Lotus japonicus HOM05D004453 ORTHO05D005375 1.4e-102 376.7 241 81.3
Lalb_Chr16g0385441 Lupinus albus HOM05D004453 ORTHO05D005375 2.6e-101 372.5 251 78.1
Ca_18793_v3 Cicer arietinum L. HOM05D004453 ORTHO05D005375 3.7e-100 368.6 247 78.5
Psat7g133480 Pisum sativum HOM05D004453 ORTHO05D005375 1.6e-98 363.2 241 78.8
Medtr4g083300 Medicago truncatula HOM05D004453 ORTHO05D005375 2.1e-98 362.8 250 77.2
TPR.G34071 Trifolium pratense HOM05D004453 ORTHO05D005375 2.1e-98 362.8 238 80.3
arahy.Tifrunner.gnm1.ann1.GHD6QC Arachis hypogaea HOM05D004453 ORTHO05D005375 2.8e-95 352.4 252 73.8
arahy.Tifrunner.gnm1.ann1.C35Y2E Arachis hypogaea HOM05D004453 ORTHO05D005375 4.7e-95 351.7 252 73.4
THA.LOC104815673 Tarenaya hassleriana HOM05D004453 ORTHO05D005375 1.7e-81 306.6 243 69.5
TWI34G0101 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 5.1e-81 305.1 247 68.0
CARHR045220 Cardamine hirsuta HOM05D004453 ORTHO05D005375 1.9e-80 303.1 247 67.6
Cfa009532 Carpinus fangiana HOM05D004453 ORTHO05D005375 2.5e-80 302.8 252 69.0
Thhalv10011735m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 2.5e-80 302.8 248 68.1
Sp1g41150 Schrenkiella parvula HOM05D004453 ORTHO05D005375 3.3e-80 302.4 248 67.7
Dinv13490 Davidia involucrata HOM05D004453 ORTHO05D005375 9.6e-80 300.8 247 66.0
QL01p007925 Quercus lobata HOM05D004453 ORTHO05D005375 9.6e-80 300.8 240 69.2
AL1G63560 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 1.6e-79 300.1 249 66.7
Manes.17G052200 Manihot esculenta HOM05D004453 ORTHO05D005375 2.1e-79 299.7 252 67.9
GSVIVG01025506001 Vitis vinifera HOM05D004453 ORTHO05D005375 8.1e-79 297.7 248 65.3
Cpa.g.sc119.21 Carica papaya HOM05D004453 ORTHO05D005375 1.4e-78 297.0 209 73.2
Manes.16G034900 Manihot esculenta HOM05D004453 ORTHO05D005375 1.4e-78 297.0 238 67.6
Sed0012812 Sechium edule HOM05D004453 ORTHO05D005375 1.4e-78 297.0 251 66.1
Dinv03791 Davidia involucrata HOM05D004453 ORTHO05D005375 2.4e-78 296.2 239 66.5
CsaV3_4G017680 Cucumis sativus L. HOM05D004453 ORTHO05D005375 4.0e-78 295.4 234 67.9
BcaC08g44204 Brassica carinata HOM05D004453 ORTHO05D005375 5.3e-78 295.0 248 67.3
A05p17380 Brassica napus HOM05D004453 ORTHO05D005375 5.3e-78 295.0 243 66.7
BolC6t36812H Brassica oleracea HOM05D004453 ORTHO05D005375 5.3e-78 295.0 248 67.3
TWI60G0130 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 6.9e-78 294.7 240 68.3
AT1G55535 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 1.5e-77 293.5 252 65.1
C06p16140 Brassica napus HOM05D004453 ORTHO05D005375 3.4e-77 292.4 247 67.2
Carub.0001s4404 Capsella rubella HOM05D004453 ORTHO05D005375 3.4e-77 292.4 252 65.1
Lalb_Chr05g0219881 Lupinus albus HOM05D004453 ORTHO05D005375 9.9e-77 290.8 209 75.1
Eucgr.J01746 Eucalyptus grandis HOM05D004453 ORTHO05D005375 1.7e-76 290.0 240 66.7
MD11G1001200 Malus domestica HOM05D004453 ORTHO05D005375 2.9e-76 289.3 243 67.5
Actinidia16228 Actinidia chinensis HOM05D004453 ORTHO05D005375 3.8e-76 288.9 245 63.3
ClCG02G024480 Citrullus lanatus HOM05D004453 ORTHO05D005375 8.4e-76 287.7 220 69.5
MD03G1001500 Malus domestica HOM05D004453 ORTHO05D005375 1.1e-75 287.3 245 67.3
Prupe.6G001400 Prunus persica HOM05D004453 ORTHO05D005375 1.1e-75 287.3 235 66.4
BcaC01g01533 Brassica carinata HOM05D004453 ORTHO05D005375 2.4e-75 286.2 251 64.5
C03p92850 Brassica napus HOM05D004453 ORTHO05D005375 2.4e-75 286.2 257 63.4
BolC3t21591H Brassica oleracea HOM05D004453 ORTHO05D005375 2.4e-75 286.2 257 63.4
Atru.chr4.902 Acer truncatum HOM05D004453 ORTHO05D005375 4.2e-75 285.4 238 67.2
BcaB02g10815 Brassica carinata HOM05D004453 ORTHO05D005375 1.2e-74 283.9 249 64.7
A08p00560 Brassica napus HOM05D004453 ORTHO05D005375 2.7e-74 282.7 254 63.8
BraA08t32115Z Brassica rapa HOM05D004453 ORTHO05D005375 3.5e-74 282.3 254 63.8
PGR119G0742 Punica granatum HOM05D004453 ORTHO05D005375 4.6e-74 282.0 240 65.0
Cc01_g00270 Coffea canephora HOM05D004453 ORTHO05D005375 1.8e-73 280.0 248 62.5
Ciclev10016282m.g Citrus clementina HOM05D004453 ORTHO05D005375 8.7e-73 277.7 266 61.3
TAR623G1190 Trochodendron aralioides HOM05D004453 ORTHO05D005375 1.5e-72 276.9 235 63.8
MELO3C031044.2 Cucumis melo HOM05D004453 ORTHO05D005375 2.8e-71 272.7 231 66.2
Peaxi162Scf00186g01212 Petunia axillaris HOM05D004453 ORTHO05D005375 2.8e-71 272.7 249 61.0
Thecc.09G205600 Theobroma cacao HOM05D004453 ORTHO05D005375 4.8e-71 271.9 251 63.7
CSS0040072 Camellia sinensis var. sinensis HOM05D004453 ORTHO05D005375 6.2e-71 271.6 253 59.7
vmacro12597 Vaccinium macrocarpon HOM05D004453 ORTHO05D005375 6.2e-71 271.6 250 60.4
Rhsim01G0183700 Rhododendron simsii HOM05D004453 ORTHO05D005375 1.4e-70 270.4 247 61.1
Nn7g35809 Nelumbo nucifera HOM05D004453 ORTHO05D005375 5.3e-70 268.5 243 60.5
Oeu023964.1 Olea europaea HOM05D004453 ORTHO05D005375 5.3e-70 268.5 239 62.8
Sabra01G0001000 Salix brachista HOM05D004453 ORTHO05D005375 9.0e-70 267.7 262 57.3
Solyc01g050070.4 Solanum lycopersicum HOM05D004453 ORTHO05D005375 9.0e-70 267.7 205 69.8
PGR102G2973 Punica granatum HOM05D004453 ORTHO05D005375 1.2e-69 267.3 236 64.0
Ah.04g153920 Amaranthus hybridus HOM05D004453 ORTHO05D005375 2.0e-69 266.5 235 60.4
Sc13g0003960 Simmondsia chinensis HOM05D004453 ORTHO05D005375 2.0e-69 266.5 207 69.1
Sopen01g019490 Solanum pennellii HOM05D004453 ORTHO05D005375 2.0e-69 266.5 205 69.3
FAN25G0403 Fragaria x ananassa HOM05D004453 ORTHO05D005375 4.5e-69 265.4 242 63.6
RcHm_v2.0_Chr5g0084051 Rosa chinensis HOM05D004453 ORTHO05D005375 4.5e-69 265.4 246 63.0
AUR62042621 Chenopodium quinoa HOM05D004453 ORTHO05D005375 7.6e-69 264.6 241 59.3
FAN16G2113 Fragaria x ananassa HOM05D004453 ORTHO05D005375 9.9e-69 264.2 242 63.2
FvH4_3g45940 Fragaria vesca HOM05D004453 ORTHO05D005375 1.7e-68 263.5 242 63.2
FAN11G3564 Fragaria x ananassa HOM05D004453 ORTHO05D005375 1.7e-68 263.5 242 63.2
FAN21G0323 Fragaria x ananassa HOM05D004453 ORTHO05D005375 1.7e-68 263.5 242 63.2
Aa31LG10G710 Aethionema arabicum HOM05D004453 ORTHO05D005375 3.8e-68 262.3 242 62.8
COL.COLO4_35070 Corchorus olitorius HOM05D004453 ORTHO05D005375 1.1e-67 260.8 249 63.1
Aqoxy1G00087 Aquilegia oxysepala HOM05D004453 ORTHO05D005375 1.9e-67 260.0 236 61.0
Potri.001G001400 Populus trichocarpa HOM05D004453 ORTHO05D005375 1.9e-67 260.0 195 69.2
PSO339G2035 Papaver somniferum HOM05D004453 ORTHO05D005375 2.4e-67 259.6 242 59.9
PSO384G0395 Papaver somniferum HOM05D004453 ORTHO05D005375 3.2e-67 259.2 243 59.7
AUR62040892 Chenopodium quinoa HOM05D001653 ORTHO05D001751 9.3e-67 257.7 232 60.3
Eucgr.B03584 Eucalyptus grandis HOM05D004453 ORTHO05D005375 9.3e-67 257.7 213 64.8
Hund01806 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.2e-66 257.3 264 58.3
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 3.5e-66 255.8 194 71.6
DCAR_023824 Daucus carota HOM05D004453 ORTHO05D005375 4.6e-66 255.4 206 64.6
TAR369G0719 Trochodendron aralioides HOM05D004453 ORTHO05D005375 1.8e-65 253.4 231 61.5
Duzib150G1073 Durio zibethinus HOM05D004453 ORTHO05D005375 3.9e-65 252.3 254 60.2
Migut.N00531 Erythranthe guttata HOM05D004453 ORTHO05D005375 1.1e-64 250.8 230 60.4
MBI19_g09317_MAGBIO Magnolia biondii HOM05D004453 ORTHO05D005375 1.5e-64 250.4 247 58.3
Nn2g15897 Nelumbo nucifera HOM05D004453 ORTHO05D005375 2.5e-64 249.6 229 60.3
Haze_22921 Corylus avellana HOM05D004453 ORTHO05D005375 7.4e-64 248.1 212 67.5
ECA238G2653 Erigeron canadensis HOM05D004453 ORTHO05D005375 1.1e-62 244.2 231 58.0
Gohir.D03G147000 Gossypium hirsutum HOM05D004453 ORTHO05D005375 1.1e-62 244.2 212 62.7
CiPaw.13G179200 Carya illinoinensis HOM05D004453 ORTHO05D005375 1.8e-62 243.4 242 59.9
Gorai.003G154400 Gossypium raimondii HOM05D004453 ORTHO05D005375 1.2e-61 240.7 212 61.8
Gohir.A03G021700 Gossypium hirsutum HOM05D004453 ORTHO05D005375 2.6e-61 239.6 201 64.2
EL10Ac7g17533 Beta vulgaris HOM05D004453 ORTHO05D005375 1.0e-60 237.7 236 57.6
Aa31LG8G630 Aethionema arabicum HOM05D004453 ORTHO05D005375 1.7e-60 236.9 200 64.5
Gohir.D08G020800 Gossypium hirsutum HOM05D004453 ORTHO05D005375 1.7e-60 236.9 258 57.4
ATR0068G064 Amborella trichopoda HOM05D004453 ORTHO05D005375 6.5e-60 235.0 250 57.2
PSO541G5087 Papaver somniferum HOM05D004453 ORTHO05D005375 1.1e-59 234.2 210 60.0
PSO675G3694 Papaver somniferum HOM05D004453 ORTHO05D005375 1.1e-59 234.2 210 60.0
SGA_v2.0_scaffold6G03329 Striga asiatica HOM05D004453 ORTHO05D005375 1.4e-59 233.8 240 56.2
CARHR088030 Cardamine hirsuta HOM05D004453 ORTHO05D005375 1.9e-59 233.4 255 56.1
Thhalv10021458m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 1.9e-59 233.4 216 58.8
Gohir.A08G014200 Gossypium hirsutum HOM05D004453 ORTHO05D005375 2.5e-59 233.0 240 59.6
HanXRQChr14g0437111 Helianthus annuus HOM05D004453 ORTHO05D005375 2.5e-59 233.0 240 56.7
ECA248G0105 Erigeron canadensis HOM05D004453 ORTHO05D005375 3.2e-59 232.6 229 58.1
MSTRG.18889 Avicennia marina HOM05D004453 ORTHO05D005375 1.2e-58 230.7 252 53.2
Carub.0003s1279 Capsella rubella HOM05D004453 ORTHO05D005375 2.7e-58 229.6 263 54.0
AL3G25290 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 4.6e-58 228.8 260 54.2
Gorai.004G020100 Gossypium raimondii HOM05D004453 ORTHO05D005375 1.3e-57 227.3 240 58.3
AT3G13420 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 4.3e-56 222.2 170 70.0
Sp3g11610 Schrenkiella parvula HOM05D004453 ORTHO05D005375 5.7e-56 221.9 260 53.5
Zm00001eb303530 Zea mays HOM05D004453 ORTHO05D005375 2.8e-55 219.5 254 52.8
Potri.003G223300 Populus trichocarpa HOM05D004453 ORTHO05D005375 6.3e-55 218.4 238 53.8
HPP92_000788 Vanilla planifolia HOM05D004453 ORTHO05D005375 6.3e-55 218.4 227 54.2
CDE02G3000 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 8.2e-55 218.0 190 58.9
HPP92_026813 Vanilla planifolia HOM05D004453 ORTHO05D005375 1.1e-54 217.6 226 54.0
SGA_v2.0_scaffold3G01700 Striga asiatica HOM05D004453 ORTHO05D005375 1.4e-54 217.2 196 61.7
Lsat_1_v5_gn_1_71301 Lactuca sativa HOM05D004453 ORTHO05D005375 1.8e-54 216.9 241 54.8
CDE04G0921 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 3.1e-54 216.1 220 54.1
Nitab4.5_0002355g0020 Nicotiana tabacum HOM05D004453 ORTHO05D005375 2.0e-53 213.4 205 60.0
A05p36110 Brassica napus HOM05D004453 ORTHO05D005375 5.9e-53 211.8 160 68.8
C05p54480 Brassica napus HOM05D004453 ORTHO05D005375 1.0e-52 211.1 160 68.1
BolC5t34115H Brassica oleracea HOM05D004453 ORTHO05D005375 1.0e-52 211.1 160 68.1
SEGI_24089 Sequoiadendron giganteum HOM05D004453 ORTHO05D005375 2.2e-52 209.9 198 57.6
Os07g0223700 Oryza sativa ssp. japonica HOM05D004453 ORTHO05D005375 8.5e-52 208.0 221 55.2
Lsat_1_v5_gn_2_50660 Lactuca sativa HOM05D004453 ORTHO05D005375 2.5e-51 206.5 234 52.1
BcaC05g29180 Brassica carinata HOM05D004453 ORTHO05D005375 4.6e-50 202.2 143 72.0
Nitab4.5_0000075g0210 Nicotiana tabacum HOM05D004453 ORTHO05D005375 1.8e-46 190.3 240 48.8
BraA05t20635Z Brassica rapa HOM05D004453 ORTHO05D005375 2.4e-46 189.9 126 76.2
SHI31305 Sapria himalayana HOM05D004453 ORTHO05D005375 2.9e-44 183.0 195 55.9
SHI06880 Sapria himalayana HOM05D004453 ORTHO05D005375 3.2e-43 179.5 171 60.2
SMO203G0107 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 6.1e-42 175.3 199 51.3
SMO271G0148 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 7.9e-42 174.9 188 55.3
unitig_62.g23532 Utricularia gibba HOM05D004453 ORTHO05D005375 2.2e-39 166.8 246 45.1
AagrBONN_evm.TU.Sc2ySwM_228.4359 Anthoceros agrestis HOM05D004453 ORTHO05D005375 1.8e-38 163.7 184 52.2
CARHR152870 Cardamine hirsuta HOM05D004453 ORTHO05D005375 5.9e-37 158.7 115 73.0
Mapoly0036s0042 Marchantia polymorpha HOM05D004453 ORTHO05D005375 5.9e-37 158.7 209 47.8
SalBow3G0087 Salvia bowleyana HOM05D004453 ORTHO05D005375 2.2e-36 156.8 166 52.4
unitig_52.g17526 Utricularia gibba HOM05D004453 ORTHO05D005375 3.6e-34 149.4 229 45.0
Pp3c1_38420 Physcomitrium patens HOM05D004453 ORTHO05D005375 4.4e-32 142.5 194 47.4
Pp3c2_4610 Physcomitrium patens HOM05D004453 ORTHO05D005375 1.3e-31 141.0 207 44.4
Lj1C553T1 Lonicera japonica HOM05D004453 ORTHO05D005375 2.2e-31 140.2 101 71.3
Pp3c14_21170 Physcomitrium patens HOM05D004453 ORTHO05D005375 2.2e-31 140.2 184 46.7
Lj1C553T2 Lonicera japonica HOM05D004453 ORTHO05D005375 7.0e-30 135.2 115 60.9
Actinidia30440 Actinidia chinensis HOM05D004453 ORTHO05D005375 1.6e-29 134.0 93 74.2
SMO353G0048 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 9.4e-27 124.8 196 40.3
Psat5g028160 Pisum sativum HOM05D004453 ORTHO05D005375 1.8e-25 120.6 100 65.0
Psat5g028080 Pisum sativum HOM05D004453 ORTHO05D005375 3.0e-25 119.8 86 70.9
HPP92_019023 Vanilla planifolia HOM05D004453 ORTHO05D005375 3.7e-23 112.8 97 60.8
Oeu060910.1 Olea europaea HOM05D004453 ORTHO05D005375 3.1e-22 109.8 131 48.9
BcaB01g02219 Brassica carinata HOM05D004453 ORTHO05D005375 1.2e-16 91.3 89 50.6
Zm00001eb095200 Zea mays HOM05D004453 ORTHO05D005375 1.8e-14 84.0 126 46.0
SMO308G0081 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 1.5e-11 74.3 146 41.1
CBR_g35002 Chara braunii HOM05D000321 ORTHO05D000204 5.7e-08 62.4 67 55.2
BcaC04g20719 Brassica carinata HOM05D004453 ORTHO05D014925 4.9e-07 59.3 124 35.5
HPP92_019024 Vanilla planifolia HOM05D004453 ORTHO05D005375 1.1e-06 58.2 109 40.4


User provided reference genes

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