Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G100000 Phaseolus vulgaris HOM05D005570 ORTHO05D007368 1.4e-87 326.2 168 100.0
VMungo0251G2804 Vigna mungo HOM05D005570 ORTHO05D007368 1.3e-83 313.2 168 94.6
Glyma.07G223300 Glycine max HOM05D005570 ORTHO05D007368 1.9e-71 272.7 168 81.0
Lj1g0005707 Lotus japonicus HOM05D005570 ORTHO05D007368 2.5e-68 262.3 169 79.9
Ca_18776_v3 Cicer arietinum L. HOM05D005570 ORTHO05D007368 5.7e-68 261.2 168 76.2
Psat7g132520 Pisum sativum HOM05D005570 ORTHO05D007368 2.4e-66 255.8 163 77.9
Lalb_Chr09g0328771 Lupinus albus HOM05D005570 ORTHO05D007368 5.9e-65 251.1 169 74.6
Medtr4g083580 Medicago truncatula HOM05D005570 ORTHO05D007368 2.2e-64 249.2 170 75.9
arahy.Tifrunner.gnm1.ann1.66C0B7 Arachis hypogaea HOM05D005570 ORTHO05D007368 3.2e-63 245.4 166 73.5
arahy.Tifrunner.gnm1.ann1.TWVE3E Arachis hypogaea HOM05D005570 ORTHO05D007368 3.2e-63 245.4 166 73.5
TPR.G11531 Trifolium pratense HOM05D005570 ORTHO05D007368 6.1e-62 241.1 168 72.6
arahy.Tifrunner.gnm1.ann1.18Q938 Arachis hypogaea HOM05D005570 ORTHO05D007368 8.7e-61 237.3 164 72.0
arahy.Tifrunner.gnm1.ann1.CPK3HX Arachis hypogaea HOM05D005570 ORTHO05D007368 7.4e-60 234.2 164 72.6
TWI18G0239 Tripterygium wilfordii HOM05D005570 ORTHO05D007368 1.1e-55 220.3 162 69.1
CiPaw.01G284700 Carya illinoinensis HOM05D005570 ORTHO05D007368 6.7e-53 211.1 160 66.2
Cfa018716 Carpinus fangiana HOM05D005570 ORTHO05D007368 2.0e-52 209.5 162 64.2
Sc21g0000460 Simmondsia chinensis HOM05D005570 ORTHO05D007368 2.0e-52 209.5 162 65.4
HanXRQChr03g0075001 Helianthus annuus HOM05D005570 ORTHO05D007368 2.5e-52 209.1 163 65.6
Peaxi162Scf00612g00133 Petunia axillaris HOM05D005570 ORTHO05D007368 3.3e-52 208.8 164 64.6
CSS0001120 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 7.4e-52 207.6 162 64.8
GSVIVG01018573001 Vitis vinifera HOM05D005570 ORTHO05D007368 9.7e-52 207.2 162 66.7
Hma1.2p1_0599F.1_g187020 Hydrangea macrophylla HOM05D005570 ORTHO05D007368 2.2e-51 206.1 162 66.0
Haze_07109 Corylus avellana HOM05D005570 ORTHO05D007368 3.7e-51 205.3 162 63.0
Manes.13G060500 Manihot esculenta HOM05D005570 ORTHO05D007368 3.7e-51 205.3 160 65.6
MSTRG.12255 Avicennia marina HOM05D005570 ORTHO05D007368 4.8e-51 204.9 163 65.0
Carub.0003s2602 Capsella rubella HOM05D005570 ORTHO05D007368 1.1e-50 203.8 162 63.0
Gohir.D01G037900 Gossypium hirsutum HOM05D005570 ORTHO05D007368 1.1e-50 203.8 159 65.4
Gorai.002G046300 Gossypium raimondii HOM05D005570 ORTHO05D007368 1.1e-50 203.8 159 65.4
CSS0020937 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 2.4e-50 202.6 162 63.6
AUR62019308 Chenopodium quinoa HOM05D005570 ORTHO05D007368 2.4e-50 202.6 158 65.2
Duzib213G1053 Durio zibethinus HOM05D005570 ORTHO05D007368 3.1e-50 202.2 157 64.3
AT2G04340 Arabidopsis thaliana HOM05D005570 ORTHO05D007368 4.1e-50 201.8 162 61.7
CsaV3_1G000130 Cucumis sativus L. HOM05D005570 ORTHO05D007368 4.1e-50 201.8 159 64.2
Potri.014G169500 Populus trichocarpa HOM05D005570 ORTHO05D007368 5.3e-50 201.4 162 66.0
Gohir.A01G047200 Gossypium hirsutum HOM05D005570 ORTHO05D007368 6.9e-50 201.1 159 64.8
Lj9C217G3 Lonicera japonica HOM05D005570 ORTHO05D007368 6.9e-50 201.1 164 62.2
TPR.G34081 Trifolium pratense HOM05D005570 ORTHO05D007368 6.9e-50 201.1 139 72.7
Thecc.07G134300 Theobroma cacao HOM05D005570 ORTHO05D007368 1.2e-49 200.3 154 66.2
BcaB06g26780 Brassica carinata HOM05D005570 ORTHO05D007368 1.5e-49 199.9 163 62.6
COL.COLO4_17467 Corchorus olitorius HOM05D005570 ORTHO05D007368 1.5e-49 199.9 158 63.9
Lsat_1_v5_gn_9_102501 Lactuca sativa HOM05D005570 ORTHO05D007368 1.5e-49 199.9 163 62.6
Nitab4.5_0005376g0020 Nicotiana tabacum HOM05D005570 ORTHO05D007368 1.5e-49 199.9 162 61.7
Sp3g23170 Schrenkiella parvula HOM05D005570 ORTHO05D007368 1.5e-49 199.9 162 61.7
Solyc07g042710.3 Solanum lycopersicum HOM05D005570 ORTHO05D007368 1.5e-49 199.9 163 62.0
Sopen07g023810 Solanum pennellii HOM05D005570 ORTHO05D007368 1.5e-49 199.9 163 62.0
Rhsim04G0030600 Rhododendron simsii HOM05D005570 ORTHO05D007368 2.0e-49 199.5 162 63.0
AUR62000128 Chenopodium quinoa HOM05D005570 ORTHO05D007368 2.6e-49 199.1 162 63.0
Ciclev10016955m.g Citrus clementina HOM05D005570 ORTHO05D007368 2.6e-49 199.1 160 62.5
Sabra14G0129400 Salix brachista HOM05D005570 ORTHO05D007368 2.6e-49 199.1 161 64.6
BcaC06g35864 Brassica carinata HOM05D005570 ORTHO05D007368 3.4e-49 198.7 162 61.7
A07p06720 Brassica napus HOM05D005570 ORTHO05D007368 3.4e-49 198.7 151 64.9
C07p10300 Brassica napus HOM05D005570 ORTHO05D007368 3.4e-49 198.7 162 61.7
BolC7t41480H Brassica oleracea HOM05D005570 ORTHO05D007368 3.4e-49 198.7 162 61.7
BraA07t28466Z Brassica rapa HOM05D005570 ORTHO05D007368 3.4e-49 198.7 165 60.6
ClCG06G018310 Citrullus lanatus HOM05D005570 ORTHO05D007368 3.4e-49 198.7 161 61.5
MD06G1132000 Malus domestica HOM05D005570 ORTHO05D007368 3.4e-49 198.7 163 63.8
Aa31LG7G6130 Aethionema arabicum HOM05D005570 ORTHO05D007368 4.5e-49 198.4 154 63.0
Sed0027705 Sechium edule HOM05D005570 ORTHO05D007368 4.5e-49 198.4 161 62.1
TAR374G1095 Trochodendron aralioides HOM05D005570 ORTHO05D007368 1.0e-48 197.2 154 64.9
MD14G1148400 Malus domestica HOM05D005570 ORTHO05D007368 1.3e-48 196.8 163 62.6
Nitab4.5_0005354g0010 Nicotiana tabacum HOM05D005570 ORTHO05D007368 1.3e-48 196.8 162 60.5
Thhalv10002687m.g Eutrema salsugineum HOM05D005570 ORTHO05D007368 1.7e-48 196.4 162 60.5
CARHR102200 Cardamine hirsuta HOM05D005570 ORTHO05D007368 2.2e-48 196.1 162 60.5
Atru.chr6.3424 Acer truncatum HOM05D005570 ORTHO05D007368 5.0e-48 194.9 160 63.8
Eucgr.K01395 Eucalyptus grandis HOM05D005570 ORTHO05D007368 5.0e-48 194.9 154 63.0
AL3G42010 Arabidopsis lyrata HOM05D005570 ORTHO05D007368 1.9e-47 193.0 154 61.7
Prupe.5G143000 Prunus persica HOM05D005570 ORTHO05D007368 1.9e-47 193.0 163 61.3
PSO357G0372 Papaver somniferum HOM05D005570 ORTHO05D007368 2.5e-47 192.6 162 58.6
Cc02_g29600 Coffea canephora HOM05D005570 ORTHO05D007368 5.5e-47 191.4 152 64.5
Actinidia07853 Actinidia chinensis HOM05D005570 ORTHO05D007368 7.2e-47 191.0 154 64.3
RcHm_v2.0_Chr7g0188821 Rosa chinensis HOM05D005570 ORTHO05D007368 7.2e-47 191.0 163 62.0
Nn4g22113 Nelumbo nucifera HOM05D005570 ORTHO05D007368 9.4e-47 190.7 154 61.0
QL10p000758 Quercus lobata HOM05D005570 ORTHO05D007368 1.2e-46 190.3 162 60.5
unitig_26.g9513 Utricularia gibba HOM05D005570 ORTHO05D007368 1.2e-46 190.3 164 57.9
ATR0751G216 Amborella trichopoda HOM05D005570 ORTHO05D007368 1.6e-46 189.9 162 61.7
MBI14_g24038_MAGBIO Magnolia biondii HOM05D005570 ORTHO05D007368 1.6e-46 189.9 154 64.3
PGR031G1532 Punica granatum HOM05D005570 ORTHO05D007368 1.6e-46 189.9 144 66.0
PGR044G2338 Punica granatum HOM05D005570 ORTHO05D007368 1.6e-46 189.9 144 66.0
Migut.H01280 Erythranthe guttata HOM05D005570 ORTHO05D007368 3.6e-46 188.7 163 58.3
DCAR_008745 Daucus carota HOM05D005570 ORTHO05D007368 4.7e-46 188.3 154 61.7
FAN18G0853 Fragaria x ananassa HOM05D005570 ORTHO05D007368 1.0e-45 187.2 165 60.0
PSO063G6961 Papaver somniferum HOM05D005570 ORTHO05D007368 1.0e-45 187.2 164 57.9
ECA240G0244 Erigeron canadensis HOM05D005570 ORTHO05D007368 1.4e-45 186.8 143 65.7
FvH4_5g09330 Fragaria vesca HOM05D005570 ORTHO05D007368 1.4e-45 186.8 164 59.8
FAN04G1041 Fragaria x ananassa HOM05D005570 ORTHO05D007368 1.8e-45 186.4 165 59.4
FAN13G2066 Fragaria x ananassa HOM05D005570 ORTHO05D007368 1.8e-45 186.4 165 60.0
PSO421G0324 Papaver somniferum HOM05D005570 ORTHO05D007368 8.8e-45 184.1 162 56.8
PSO063G1837 Papaver somniferum HOM05D005570 ORTHO05D007368 1.1e-44 183.7 164 56.7
Aqoxy2G01347 Aquilegia oxysepala HOM05D005570 ORTHO05D007368 2.0e-44 183.0 163 58.3
Aqoxy7G00316 Aquilegia oxysepala HOM05D005570 ORTHO05D007368 5.7e-44 181.4 162 58.0
CANSAT01G1761 Cannabis sativa HOM05D005570 ORTHO05D007368 1.7e-43 179.9 150 62.0
Cpa.g.sc136.41 Carica papaya HOM05D005570 ORTHO05D007368 4.8e-43 178.3 134 68.7
EL10Ac4g10242 Beta vulgaris HOM05D005570 ORTHO05D007368 1.1e-42 177.2 202 49.0
CSS0039609 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 7.7e-41 171.0 162 56.2
HPP92_013643 Vanilla planifolia HOM05D005570 ORTHO05D007368 1.3e-40 170.2 149 57.7
MELO3C026167.2 Cucumis melo HOM05D005570 ORTHO05D007368 1.7e-40 169.9 225 44.4
Oeu015172.1 Olea europaea HOM05D005570 ORTHO05D007368 2.2e-40 169.5 134 64.2
TWI36G1338 Tripterygium wilfordii HOM05D005570 ORTHO05D007368 3.8e-40 168.7 135 65.2
Lj8A137G54 Lonicera japonica HOM05D005570 ORTHO05D007368 5.0e-40 168.3 135 63.7
Ah.12g059860 Amaranthus hybridus HOM05D005570 ORTHO05D007368 1.0e-37 160.6 146 57.5
SGA_v2.0_scaffold317G48443 Striga asiatica HOM05D005570 ORTHO05D007368 1.8e-37 159.8 171 52.6
PSO421G0119 Papaver somniferum HOM05D005570 ORTHO05D007368 5.2e-37 158.3 134 59.7
SGA_v2.0_scaffold96G29016 Striga asiatica HOM05D005570 ORTHO05D007368 5.2e-37 158.3 133 63.2
Os09g0478400 Oryza sativa ssp. japonica HOM05D005570 ORTHO05D007368 2.0e-36 156.4 147 51.7
vmacro09474 Vaccinium macrocarpon HOM05D005570 ORTHO05D007368 7.5e-36 154.5 164 53.0
Zm00001eb101470 Zea mays HOM05D005570 ORTHO05D007368 9.7e-36 154.1 147 50.3
CDE10G0507 Ceratophyllum demersum HOM05D005570 ORTHO05D007368 1.3e-35 153.7 132 56.8
MBI14_g13534_MAGBIO Magnolia biondii HOM05D005570 ORTHO05D007368 1.4e-34 150.2 109 65.1
SGA_v2.0_scaffold317G48460 Striga asiatica HOM05D005570 ORTHO05D007368 4.5e-33 145.2 134 59.7
Glyma.20G022600 Glycine max HOM05D005570 ORTHO05D007368 2.9e-32 142.5 104 74.0
Hund21535 Selenicereus undatus HOM05D005570 ORTHO05D007368 8.5e-32 141.0 91 71.4
SEGI_08222 Sequoiadendron giganteum HOM05D005570 ORTHO05D007368 5.5e-31 138.3 125 55.2
Lsat_1_v5_gn_4_24381 Lactuca sativa HOM05D005570 ORTHO05D007368 6.8e-29 131.3 103 64.1
SGA_v2.0_scaffold28G12060 Striga asiatica HOM05D005570 ORTHO05D007368 4.8e-27 125.2 110 60.0
Rhsim04G0030300 Rhododendron simsii HOM05D005570 ORTHO05D007368 1.8e-26 123.2 109 56.9
Mapoly0084s0063 Marchantia polymorpha HOM05D005570 ORTHO05D007368 7.7e-25 117.9 131 45.0
Rhsim04G0030400 Rhododendron simsii HOM05D005570 ORTHO05D007368 2.5e-23 112.8 83 60.2
SGA_v2.0_scaffold2G00813 Striga asiatica HOM05D005570 ORTHO05D007368 7.2e-23 111.3 126 53.2
Pp3c22_13450 Physcomitrium patens HOM05D005570 ORTHO05D007368 2.7e-22 109.4 129 45.0
SGA_v2.0_scaffold323G48653 Striga asiatica HOM05D005570 ORTHO05D007368 1.0e-21 107.5 112 52.7
Gohir.D01G037901 Gossypium hirsutum HOM05D005570 ORTHO05D007368 2.0e-20 103.2 80 63.8
Solyc07g045260.3 Solanum lycopersicum HOM05D005570 ORTHO05D007368 2.0e-20 103.2 66 68.2
Oeu031101.2 Olea europaea HOM05D005570 ORTHO05D007368 3.8e-16 89.0 55 69.1
Potri.001G241100 Populus trichocarpa HOM05D005570 ORTHO05D007368 1.1e-15 87.4 83 59.0
Potri.014G169750 Populus trichocarpa HOM05D005570 ORTHO05D007368 1.9e-15 86.7 54 72.2
Lsat_1_v5_gn_4_72161 Lactuca sativa HOM05D005570 ORTHO05D007368 6.1e-14 81.6 53 67.9
SGA_v2.0_scaffold317G48459 Striga asiatica HOM05D005570 ORTHO05D007368 8.9e-13 77.8 58 63.8
Hund30621 Selenicereus undatus HOM05D005570 ORTHO05D007368 4.4e-12 75.5 71 60.6
Hund30622 Selenicereus undatus HOM05D005570 ORTHO05D007368 4.4e-12 75.5 71 60.6
Potri.001G240904 Populus trichocarpa HOM05D005570 ORTHO05D007368 7.5e-12 74.7 54 63.0
CBR_g57071 Chara braunii HOM05D001740 ORTHO05D001468 7.0e-10 68.2 81 38.3


User provided reference genes

Program Settings