Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G098000 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 1.1e-221 773.1 402 100.0
Phvul.009G191800 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 1.5e-199 699.5 391 94.1
VMungo0251G2308 Vigna mungo HOM05D004308 ORTHO05D005139 6.1e-193 677.6 393 90.1
Glyma.07G221600 Glycine max HOM05D004308 ORTHO05D005139 2.7e-164 582.4 398 79.4
Lj3g0012221 Lotus japonicus HOM05D004308 ORTHO05D005139 1.6e-148 530.0 396 72.0
LjContig00141g0028139 Lotus japonicus HOM05D004308 ORTHO05D005139 1.6e-148 530.0 381 72.4
TPR.G20984 Trifolium pratense HOM05D004308 ORTHO05D005139 3.8e-147 525.4 398 71.6
Psat7g130280 Pisum sativum HOM05D004308 ORTHO05D005139 6.6e-147 524.6 381 71.7
Medtr4g084070 Medicago truncatula HOM05D004308 ORTHO05D005139 3.6e-145 518.8 376 71.8
Lalb_Chr05g0219691 Lupinus albus HOM05D004308 ORTHO05D005139 1.1e-138 497.3 403 66.3
arahy.Tifrunner.gnm1.ann1.6VJH5B Arachis hypogaea HOM05D004308 ORTHO05D005139 1.5e-130 470.3 390 65.4
CiPaw.13G173300 Carya illinoinensis HOM05D004308 ORTHO05D005139 3.2e-125 452.6 384 62.8
arahy.Tifrunner.gnm1.ann1.SIQ1MV Arachis hypogaea HOM05D004308 ORTHO05D005139 1.7e-123 446.8 399 62.7
Potri.003G216900 Populus trichocarpa HOM05D004308 ORTHO05D005139 2.3e-123 446.4 399 57.6
CiPaw.13G173400 Carya illinoinensis HOM05D004308 ORTHO05D005139 3.9e-123 445.7 384 61.7
Dinv13431 Davidia involucrata HOM05D004308 ORTHO05D005139 3.9e-123 445.7 414 58.0
QL01p008001 Quercus lobata HOM05D004308 ORTHO05D005139 3.3e-122 442.6 390 60.5
Manes.17G081200 Manihot esculenta HOM05D004308 ORTHO05D005139 7.3e-122 441.4 385 59.2
TWI32G0511 Tripterygium wilfordii HOM05D004308 ORTHO05D005139 2.1e-121 439.9 384 59.4
Duzib177G0548 Durio zibethinus HOM05D004308 ORTHO05D005139 1.4e-120 437.2 383 62.1
Duzib177G1053 Durio zibethinus HOM05D004308 ORTHO05D005139 1.4e-120 437.2 383 62.1
GSVIVG01025407001 Vitis vinifera HOM05D004308 ORTHO05D005139 3.1e-120 436.0 383 57.4
Ca_18762_v3 Cicer arietinum L. HOM05D004308 ORTHO05D005139 8.9e-120 434.5 382 61.8
Haze_22983 Corylus avellana HOM05D004308 ORTHO05D005139 3.4e-119 432.6 387 61.5
Prupe.6G010000 Prunus persica HOM05D004308 ORTHO05D005139 4.4e-119 432.2 385 59.2
THA.LOC104811063 Tarenaya hassleriana HOM05D004308 ORTHO05D005139 7.6e-119 431.4 372 59.9
Ciclev10015009m.g Citrus clementina HOM05D004308 ORTHO05D005139 2.2e-118 429.9 392 56.6
Thecc.09G212800 Theobroma cacao HOM05D004308 ORTHO05D005139 4.9e-118 428.7 383 59.5
MD03G1008000 Malus domestica HOM05D004308 ORTHO05D005139 6.4e-118 428.3 359 62.4
Thhalv10007452m.g Eutrema salsugineum HOM05D004308 ORTHO05D005139 4.1e-117 425.6 347 62.0
Sp1g10500 Schrenkiella parvula HOM05D004308 ORTHO05D005139 4.1e-117 425.6 347 62.0
Aa31LG1G2850 Aethionema arabicum HOM05D004308 ORTHO05D005139 5.4e-117 425.2 357 61.3
RcHm_v2.0_Chr5g0081551 Rosa chinensis HOM05D004308 ORTHO05D005139 1.2e-116 424.1 381 59.1
MD12G1151800 Malus domestica HOM05D004308 ORTHO05D005139 2.1e-116 423.3 349 61.9
BolC8t52327H Brassica oleracea HOM05D004308 ORTHO05D005139 2.7e-116 422.9 343 61.5
Rhsim13G0230300 Rhododendron simsii HOM05D004308 ORTHO05D005139 2.7e-116 422.9 394 56.6
FvH4_3g44841 Fragaria vesca HOM05D004308 ORTHO05D005139 7.8e-116 421.4 374 58.8
FAN11G1034 Fragaria x ananassa HOM05D004308 ORTHO05D005139 7.8e-116 421.4 374 58.8
FAN25G2014 Fragaria x ananassa HOM05D004308 ORTHO05D005139 2.3e-115 419.9 374 58.6
C08p47900 Brassica napus HOM05D004308 ORTHO05D005139 3.0e-115 419.5 343 61.8
FAN21G1794 Fragaria x ananassa HOM05D004308 ORTHO05D005139 3.0e-115 419.5 373 58.7
Atru.chr1.4126 Acer truncatum HOM05D004308 ORTHO05D005139 8.6e-115 417.9 375 58.7
Carub.0001s1154 Capsella rubella HOM05D004308 ORTHO05D005139 1.1e-114 417.5 344 61.3
Gohir.A10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 1.5e-114 417.2 383 59.3
BcaB03g13224 Brassica carinata HOM05D004308 ORTHO05D005139 1.9e-114 416.8 347 60.8
Aqoxy7G00472 Aquilegia oxysepala HOM05D004308 ORTHO05D005139 2.5e-114 416.4 363 59.5
Gorai.011G002800 Gossypium raimondii HOM05D004308 ORTHO05D005139 2.5e-114 416.4 383 59.8
C08p15000 Brassica napus HOM05D004308 ORTHO05D005139 5.6e-114 415.2 349 61.0
BolC8t49130H Brassica oleracea HOM05D004308 ORTHO05D005139 5.6e-114 415.2 349 61.0
AL1G23050 Arabidopsis lyrata HOM05D004308 ORTHO05D005139 7.3e-114 414.8 356 61.5
PSO782G3227 Papaver somniferum HOM05D004308 ORTHO05D005139 9.6e-114 414.5 348 59.8
A09p64290 Brassica napus HOM05D004308 ORTHO05D005139 1.2e-113 414.1 344 60.8
BraA09t41772Z Brassica rapa HOM05D004308 ORTHO05D005139 1.2e-113 414.1 344 60.8
HanXRQChr07g0196751 Helianthus annuus HOM05D004308 ORTHO05D005139 1.6e-113 413.7 337 61.7
PSO063G3498 Papaver somniferum HOM05D004308 ORTHO05D005139 1.6e-113 413.7 348 59.2
ECA238G0198 Erigeron canadensis HOM05D004308 ORTHO05D005139 1.8e-112 410.2 386 55.4
Ah.06g193030 Amaranthus hybridus HOM05D004308 ORTHO05D005139 5.2e-112 408.7 343 60.9
TAR369G0492 Trochodendron aralioides HOM05D004308 ORTHO05D005139 5.2e-112 408.7 377 56.0
A08p33180 Brassica napus HOM05D004308 ORTHO05D005139 1.2e-111 407.5 348 59.8
BraA08t35236Z Brassica rapa HOM05D004308 ORTHO05D005139 1.5e-111 407.1 348 59.8
Migut.I00336 Erythranthe guttata HOM05D004308 ORTHO05D005139 5.8e-111 405.2 343 60.9
MBI13_g29631_MAGBIO Magnolia biondii HOM05D004308 ORTHO05D005139 7.6e-111 404.8 388 55.2
Actinidia06853 Actinidia chinensis HOM05D004308 ORTHO05D005139 9.9e-111 404.4 372 57.8
Solyc01g006000.3 Solanum lycopersicum HOM05D004308 ORTHO05D005139 1.7e-110 403.7 384 56.0
Lj9C99G0 Lonicera japonica HOM05D004308 ORTHO05D005139 2.2e-110 403.3 385 56.4
Sed0009913 Sechium edule HOM05D004308 ORTHO05D005139 3.8e-110 402.5 387 55.3
Sopen01g002010 Solanum pennellii HOM05D004308 ORTHO05D005139 3.8e-110 402.5 384 56.0
ClCG08G005760 Citrullus lanatus HOM05D004308 ORTHO05D005139 4.9e-110 402.1 387 55.0
PGSC0003DMG400032139 Solanum tuberosum HOM05D004308 ORTHO05D005139 4.9e-110 402.1 384 55.5
SGA_v2.0_scaffold28G11761 Striga asiatica HOM05D004308 ORTHO05D005139 6.4e-110 401.7 392 55.4
Eucgr.F02225 Eucalyptus grandis HOM05D004308 ORTHO05D005139 1.9e-109 400.2 382 54.2
AUR62000023 Chenopodium quinoa HOM05D004308 ORTHO05D005139 3.2e-109 399.4 353 58.1
ClCG01G010120 Citrullus lanatus HOM05D004308 ORTHO05D005139 3.2e-109 399.4 387 55.0
MELO3C015647.2 Cucumis melo HOM05D004308 ORTHO05D005139 3.2e-109 399.4 388 54.9
CSS0019756 Camellia sinensis var. sinensis HOM05D004308 ORTHO05D005139 5.4e-109 398.7 352 59.1
Hund21645 Selenicereus undatus HOM05D004308 ORTHO05D005139 5.4e-109 398.7 348 60.3
CAN.G158.6 Capsicum annuum HOM05D004308 ORTHO05D005139 3.5e-108 396.0 380 55.8
Nitab4.5_0001059g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 4.6e-108 395.6 366 58.2
CsaV3_1G042220 Cucumis sativus L. HOM05D004308 ORTHO05D005139 7.8e-108 394.8 371 55.5
SalBow5G0018 Salvia bowleyana HOM05D004308 ORTHO05D005139 5.6e-106 388.7 344 58.1
DCAR_001990 Daucus carota HOM05D004308 ORTHO05D005139 1.1e-104 384.4 388 53.1
Cc00_g18210 Coffea canephora HOM05D004308 ORTHO05D005139 1.8e-104 383.6 390 53.1
Peaxi162Scf00100g00724 Petunia axillaris HOM05D004308 ORTHO05D005139 4.5e-103 379.0 408 53.2
Lsat_1_v5_gn_3_32861 Lactuca sativa HOM05D004308 ORTHO05D005139 7.6e-103 378.3 350 57.7
vmacro11846 Vaccinium macrocarpon HOM05D004308 ORTHO05D005139 1.3e-102 377.5 463 47.9
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 1.4e-101 374.0 361 54.3
EL10Ac4g10352 Beta vulgaris HOM05D004308 ORTHO05D005139 5.4e-101 372.1 351 57.5
Sabra03G0162000 Salix brachista HOM05D004308 ORTHO05D005139 3.5e-100 369.4 399 50.6
Zm00001eb162820 Zea mays HOM05D004308 ORTHO05D005139 1.8e-99 367.1 322 59.3
Os12g0498700 Oryza sativa ssp. japonica HOM05D004308 ORTHO05D005139 2.5e-98 363.2 329 57.4
ATR0598G220 Amborella trichopoda HOM05D004308 ORTHO05D005139 3.3e-98 362.8 295 60.7
CiPaw.13G173800 Carya illinoinensis HOM05D004308 ORTHO05D005139 3.6e-97 359.4 368 56.5
HPP92_026953 Vanilla planifolia HOM05D004308 ORTHO05D005139 1.6e-92 344.0 382 49.0
Hma1.2p1_0972F.1_g242793 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 3.5e-92 342.8 357 51.5
CiPaw.04G144200 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.3e-91 340.9 354 54.2
AUR62019194 Chenopodium quinoa HOM05D004308 ORTHO05D005139 3.3e-90 336.3 336 54.2
Cpa.g.sc1833.2 Carica papaya HOM05D004308 ORTHO05D005139 4.8e-89 332.4 276 62.3
Mapoly0040s0060 Marchantia polymorpha HOM05D004308 ORTHO05D005139 7.6e-87 325.1 389 47.3
Gohir.D10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 2.9e-86 323.2 301 58.1
MD14G1141900 Malus domestica HOM05D004308 ORTHO05D005139 6.5e-86 322.0 247 64.8
CANSAT78G0795 Cannabis sativa HOM05D004308 ORTHO05D005139 7.9e-84 315.1 241 65.1
Lj9A102G3 Lonicera japonica HOM05D004308 ORTHO05D005139 2.4e-80 303.5 292 56.2
SMO203G0184 Selaginella moellendorffii HOM05D004308 ORTHO05D005139 9.0e-80 301.6 343 49.9
Zm00001eb118570 Zea mays HOM05D004308 ORTHO05D005139 1.2e-79 301.2 286 55.6
Pp3c10_8190 Physcomitrium patens HOM05D004308 ORTHO05D005139 3.4e-79 299.7 346 49.1
AT1G11880 Arabidopsis thaliana HOM05D004308 ORTHO05D005139 2.2e-78 297.0 246 59.3
Nitab4.5_0022753g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 6.7e-75 285.4 235 61.7
Hma1.2p1_0972F.1_g242796 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 1.6e-68 264.2 258 54.3
Lju963A2G3 Lonicera japonica HOM05D004308 ORTHO05D005139 4.6e-68 262.7 234 58.5
SHI31261 Sapria himalayana HOM05D004308 ORTHO05D005139 3.9e-67 259.6 426 40.6
unitig_749.g14167 Utricularia gibba HOM05D004308 ORTHO05D005139 2.0e-66 257.3 361 44.0
CiPaw.04G144000 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.7e-65 254.2 171 71.3
CARHR012200 Cardamine hirsuta HOM05D004308 ORTHO05D005139 1.8e-64 250.8 234 56.4
MD11G1011600 Malus domestica HOM05D004308 ORTHO05D005139 3.1e-64 250.0 228 57.5
SEGI_38936 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 4.1e-64 249.6 216 55.6
MD03G1008200 Malus domestica HOM05D004308 ORTHO05D005139 5.3e-64 249.2 268 51.5
Nn4g26332 Nelumbo nucifera HOM05D004308 ORTHO05D005139 9.1e-64 248.4 244 54.5
COL.COLO4_34992 Corchorus olitorius HOM05D004308 ORTHO05D005139 1.7e-62 244.2 228 58.8
Lju366A0G8 Lonicera japonica HOM05D004308 ORTHO05D005139 2.9e-62 243.4 185 64.9
TAR623G1609 Trochodendron aralioides HOM05D004308 ORTHO05D005139 1.9e-61 240.7 251 52.2
Sc09g0000270 Simmondsia chinensis HOM05D004308 ORTHO05D005139 3.2e-61 240.0 209 60.3
CiPaw.13G173700 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.4e-56 224.6 270 48.9
Lju357C0G0 Lonicera japonica HOM05D004308 ORTHO05D005139 2.2e-54 217.2 360 38.9
CiPaw.13G173500 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.9e-54 216.9 171 63.2
CiPaw.13G173600 Carya illinoinensis HOM05D004308 ORTHO05D005139 6.5e-54 215.7 171 60.2
SEGI_23646 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 1.5e-50 204.5 214 51.9
Lsat_1_v5_gn_3_8900 Lactuca sativa HOM05D004308 ORTHO05D005139 4.4e-50 203.0 202 50.5
Glyma.20G019967 Glycine max HOM05D004308 ORTHO05D005139 1.1e-48 198.4 156 66.0
Lsat_1_v5_gn_4_166260 Lactuca sativa HOM05D004308 ORTHO05D005139 1.1e-48 198.4 157 61.1
CiPaw.13G174000 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.8e-48 197.6 149 66.4
Lju963A1G2 Lonicera japonica HOM05D004308 ORTHO05D005139 2.0e-47 194.1 394 36.8
Lj9A97G16 Lonicera japonica HOM05D004308 ORTHO05D005139 3.2e-45 186.8 213 47.9
QL01p010377 Quercus lobata HOM05D004308 ORTHO05D005139 1.2e-44 184.9 142 61.3
Lju1040C2G10 Lonicera japonica HOM05D004308 ORTHO05D005139 1.4e-43 181.4 138 64.5
MCO10G290 Micromonas commoda HOM05D004308 ORTHO05D005139 3.7e-41 173.3 332 38.0
Sc09g0000260 Simmondsia chinensis HOM05D004308 ORTHO05D005139 9.1e-40 168.7 171 54.4
Cre07.g320650 Chlamydomonas reinhardtii HOM05D004308 ORTHO05D005139 1.3e-30 138.3 391 30.4
Gohir.A10G158900 Gossypium hirsutum HOM05D004308 ORTHO05D005139 1.4e-27 128.3 193 43.5
DCAR_001389 Daucus carota HOM05D004308 ORTHO05D005139 2.0e-26 124.4 99 63.6
PRCOL_00002453 Prasinoderma coloniale HOM05D004308 ORTHO05D005139 4.4e-26 123.2 277 33.6
Lju2253A0T6 Lonicera japonica HOM05D004308 ORTHO05D005139 7.0e-24 115.9 146 48.6
SEGI_23095 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 1.2e-23 115.2 143 49.0
Nitab4.5_0000775g0120 Nicotiana tabacum HOM05D004308 ORTHO05D005139 2.7e-23 114.0 173 42.2
Lju2253C0T1 Lonicera japonica HOM05D004308 ORTHO05D005139 1.8e-19 101.3 104 52.9
Lj9C97T10 Lonicera japonica HOM05D004308 ORTHO05D005139 8.9e-19 99.0 104 51.9
Lju366C0T1 Lonicera japonica HOM05D004308 ORTHO05D005139 2.0e-18 97.8 114 49.1
Lju963A4G1 Lonicera japonica HOM05D004308 ORTHO05D005139 2.6e-18 97.4 63 63.5
Lj9A108T0 Lonicera japonica HOM05D004308 ORTHO05D005139 2.9e-17 94.0 80 56.2
Lju1680A2G13 Lonicera japonica HOM05D004308 ORTHO05D005139 1.1e-16 92.0 64 71.9
Nitab4.5_0000032g0180 Nicotiana tabacum HOM05D004308 ORTHO05D005139 1.6e-15 88.2 126 45.2
Lju1680A2G14 Lonicera japonica HOM05D004308 ORTHO05D005139 2.3e-14 84.3 102 50.0
Lsat_1_v5_gn_9_99701 Lactuca sativa HOM05D004308 ORTHO05D005139 5.0e-14 83.2 195 32.8
CBR_g46841 Chara braunii HOM05D004308 ORTHO05D005139 3.3e-13 80.5 84 44.0
CiPaw.13G174100 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.5e-10 71.6 71 57.7
Lju963C4T0 Lonicera japonica HOM05D004308 ORTHO05D005139 9.9e-10 68.9 82 46.3
Lju357C1T0 Lonicera japonica HOM05D004308 ORTHO05D005139 1.3e-09 68.6 79 49.4
Atru.chr10.196 Acer truncatum HOM05D004308 ORTHO05D005139 1.4e-08 65.1 76 47.4
Atru.chr10.219 Acer truncatum HOM05D004308 ORTHO05D005139 4.6e-07 60.1 38 71.1
Lju366C0T2 Lonicera japonica HOM05D004308 ORTHO05D005139 6.0e-07 59.7 95 35.8
Lju2253C0T0 Lonicera japonica HOM05D004308 ORTHO05D005139 3.0e-06 57.4 92 35.9


User provided reference genes

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