Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G097300 Phaseolus vulgaris HOM05D007312 ORTHO05D009209 1.0e-61 240.0 129 100.0
VMungo0251G1106 Vigna mungo HOM05D007312 ORTHO05D009209 3.4e-57 224.9 129 93.8
Medtr4g084180 Medicago truncatula HOM05D007312 ORTHO05D009209 3.3e-52 208.4 129 79.8
MD05G1250400 Malus domestica HOM05D007312 ORTHO05D009209 1.3e-51 206.5 129 77.5
TWI63G0684 Tripterygium wilfordii HOM05D007312 ORTHO05D009209 1.3e-51 206.5 129 79.8
RcHm_v2.0_Chr5g0020311 Rosa chinensis HOM05D007312 ORTHO05D009209 2.4e-50 202.2 129 86.0
Glyma.20G019100 Glycine max HOM05D007312 ORTHO05D009209 1.6e-49 199.5 129 86.0
TPR.G38271 Trifolium pratense HOM05D007312 ORTHO05D009209 1.6e-49 199.5 129 77.5
Duzib052G0161 Durio zibethinus HOM05D007312 ORTHO05D009209 2.6e-49 198.7 132 76.5
Ca_18754_v3 Cicer arietinum L. HOM05D007312 ORTHO05D009209 3.5e-49 198.4 129 76.7
Potri.012G124500 Populus trichocarpa HOM05D007312 ORTHO05D009209 1.3e-48 196.4 130 78.5
Sopen02g017880 Solanum pennellii HOM05D007312 ORTHO05D009209 3.8e-48 194.9 131 77.1
PGSC0003DMG400010438 Solanum tuberosum HOM05D007312 ORTHO05D009209 3.8e-48 194.9 131 77.1
MSTRG.7597 Avicennia marina HOM05D007312 ORTHO05D009209 5.0e-48 194.5 129 73.6
CiPaw.09G076400 Carya illinoinensis HOM05D007312 ORTHO05D009209 5.0e-48 194.5 129 74.4
Manes.16G055800 Manihot esculenta HOM05D007312 ORTHO05D009209 8.5e-48 193.7 130 75.4
Nitab4.5_0007745g0050 Nicotiana tabacum HOM05D007312 ORTHO05D009209 8.5e-48 193.7 129 75.2
Gohir.A12G046700 Gossypium hirsutum HOM05D007312 ORTHO05D009209 1.1e-47 193.4 130 74.6
QL11p016282 Quercus lobata HOM05D007312 ORTHO05D009209 1.1e-47 193.4 128 74.2
Lj4g0021225 Lotus japonicus HOM05D007312 ORTHO05D009209 1.5e-47 193.0 129 83.7
Cc09_g06000 Coffea canephora HOM05D007312 ORTHO05D009209 3.2e-47 191.8 129 75.2
FvH4_3g12430 Fragaria vesca HOM05D007312 ORTHO05D009209 3.2e-47 191.8 124 85.5
Atru.chr10.560 Acer truncatum HOM05D007312 ORTHO05D009209 4.2e-47 191.4 129 72.9
Nitab4.5_0001288g0230 Nicotiana tabacum HOM05D007312 ORTHO05D009209 4.2e-47 191.4 129 74.4
Solyc02g068710.3 Solanum lycopersicum HOM05D007312 ORTHO05D009209 5.5e-47 191.0 131 76.3
PGR042G3076 Punica granatum HOM05D007312 ORTHO05D009209 1.2e-46 189.9 129 73.6
Peaxi162Scf00149g00224 Petunia axillaris HOM05D007312 ORTHO05D009209 1.6e-46 189.5 129 73.6
GSVIVG01012104001 Vitis vinifera HOM05D007312 ORTHO05D009209 1.6e-46 189.5 129 72.1
Ciclev10017175m.g Citrus clementina HOM05D007312 ORTHO05D009209 2.1e-46 189.1 133 73.7
CSS0025621 Camellia sinensis var. sinensis HOM05D007312 ORTHO05D009209 3.6e-46 188.3 130 76.2
Eucgr.E04250 Eucalyptus grandis HOM05D007312 ORTHO05D009209 1.8e-45 186.0 135 68.1
Hma1.2p1_1005F.1_g246920 Hydrangea macrophylla HOM05D007312 ORTHO05D009209 2.3e-45 185.7 136 69.9
AL1G49340 Arabidopsis lyrata HOM05D007312 ORTHO05D009209 5.2e-45 184.5 129 69.0
BcaB04g18176 Brassica carinata HOM05D007312 ORTHO05D009209 5.2e-45 184.5 130 68.5
CANSAT35G0781 Cannabis sativa HOM05D007312 ORTHO05D009209 5.2e-45 184.5 129 69.0
ClCG01G009570 Citrullus lanatus HOM05D007312 ORTHO05D009209 1.2e-44 183.3 131 73.3
MELO3C021735.2 Cucumis melo HOM05D007312 ORTHO05D009209 1.2e-44 183.3 131 73.3
Thhalv10009117m.g Eutrema salsugineum HOM05D007312 ORTHO05D009209 1.2e-44 183.3 129 68.2
Sabra12G0094300 Salix brachista HOM05D007312 ORTHO05D009209 1.2e-44 183.3 125 76.8
AT1G31170 Arabidopsis thaliana HOM05D007312 ORTHO05D009209 1.5e-44 183.0 129 68.2
CARHR030640 Cardamine hirsuta HOM05D007312 ORTHO05D009209 1.5e-44 183.0 129 68.2
HanXRQChr12g0381571 Helianthus annuus HOM05D007312 ORTHO05D009209 1.5e-44 183.0 130 68.5
Lalb_Chr16g0385171 Lupinus albus HOM05D007312 ORTHO05D009209 2.0e-44 182.6 129 78.3
EL10Ac5g12681 Beta vulgaris HOM05D007312 ORTHO05D009209 2.6e-44 182.2 129 72.1
CsaV3_1G046220 Cucumis sativus L. HOM05D007312 ORTHO05D009209 3.3e-44 181.8 131 72.5
Lsat_1_v5_gn_3_106761 Lactuca sativa HOM05D007312 ORTHO05D009209 7.5e-44 180.6 130 70.0
TAR624G0630 Trochodendron aralioides HOM05D007312 ORTHO05D009209 7.5e-44 180.6 129 69.0
ECA234G3951 Erigeron canadensis HOM05D007312 ORTHO05D009209 9.7e-44 180.3 131 67.9
Actinidia22408 Actinidia chinensis HOM05D007312 ORTHO05D009209 1.3e-43 179.9 129 69.8
BcaC07g37774 Brassica carinata HOM05D007312 ORTHO05D009209 1.3e-43 179.9 125 69.6
SGA_v2.0_scaffold298G47689 Striga asiatica HOM05D007312 ORTHO05D009209 1.3e-43 179.9 131 69.5
SalBow8G4543 Salvia bowleyana HOM05D007312 ORTHO05D009209 3.7e-43 178.3 125 69.6
AUR62010557 Chenopodium quinoa HOM05D007312 ORTHO05D009209 4.8e-43 177.9 124 73.4
Sp1g26990 Schrenkiella parvula HOM05D007312 ORTHO05D009209 4.8e-43 177.9 130 67.7
Lj2A350T56 Lonicera japonica HOM05D007312 ORTHO05D009209 6.3e-43 177.6 126 71.4
Hund14701 Selenicereus undatus HOM05D007312 ORTHO05D009209 8.2e-43 177.2 127 71.7
Ah.01g020500 Amaranthus hybridus HOM05D007312 ORTHO05D009209 2.4e-42 175.6 124 72.6
arahy.Tifrunner.gnm1.ann1.XDA00H Arachis hypogaea HOM05D007312 ORTHO05D009209 5.3e-42 174.5 125 78.4
MBI18_g11473_MAGBIO Magnolia biondii HOM05D007312 ORTHO05D009209 9.1e-42 173.7 89 91.0
Os06g0174300 Oryza sativa ssp. japonica HOM05D007312 ORTHO05D009209 2.7e-41 172.2 89 88.8
RhsimUnG0109200 Rhododendron simsii HOM05D007312 ORTHO05D009209 2.7e-41 172.2 124 70.2
Zm00001eb375250 Zea mays HOM05D007312 ORTHO05D009209 7.7e-41 170.6 89 88.8
Carub.0001s2957 Capsella rubella HOM05D007312 ORTHO05D009209 1.0e-40 170.2 125 66.4
Aa31LG2G15110 Aethionema arabicum HOM05D007312 ORTHO05D009209 1.3e-40 169.9 113 71.7
BolC8t48163H Brassica oleracea HOM05D007312 ORTHO05D009209 1.3e-40 169.9 120 68.3
Psat7g129800 Pisum sativum HOM05D007312 ORTHO05D009209 1.3e-40 169.9 118 72.9
Rhsim13G0146500 Rhododendron simsii HOM05D007312 ORTHO05D009209 1.7e-40 169.5 124 69.4
AUR62017332 Chenopodium quinoa HOM05D007312 ORTHO05D009209 2.2e-40 169.1 124 71.0
unitig_32.g10991 Utricularia gibba HOM05D000532 ORTHO05D009209 3.8e-40 168.3 89 85.4
arahy.Tifrunner.gnm1.ann1.FJ5394 Arachis hypogaea HOM05D007312 ORTHO05D009209 5.0e-40 167.9 129 72.9
A08p10710 Brassica napus HOM05D007312 ORTHO05D009209 6.5e-40 167.5 126 65.9
BraA08t33069Z Brassica rapa HOM05D007312 ORTHO05D009209 6.5e-40 167.5 126 65.9
CDE02G1125 Ceratophyllum demersum HOM05D007312 ORTHO05D009209 8.5e-40 167.2 132 66.7
PSO541G3426 Papaver somniferum HOM05D007312 ORTHO05D009209 8.5e-40 167.2 89 85.4
THA.LOC104798553 Tarenaya hassleriana HOM05D007312 ORTHO05D009209 1.1e-39 166.8 131 71.0
Migut.M01988 Erythranthe guttata HOM05D007312 ORTHO05D009209 2.5e-39 165.6 88 86.4
Haze_06075 Corylus avellana HOM05D007312 ORTHO05D009209 5.5e-39 164.5 124 69.4
CAN.G149.9 Capsicum annuum HOM05D007312 ORTHO05D009209 9.4e-39 163.7 84 90.5
vmacro03527 Vaccinium macrocarpon HOM05D007312 ORTHO05D009209 2.1e-38 162.5 100 78.0
Aqoxy1G01718 Aquilegia oxysepala HOM05D007312 ORTHO05D009209 8.0e-38 160.6 85 87.1
HPP92_010212 Vanilla planifolia HOM05D007312 ORTHO05D009209 7.5e-36 154.1 125 62.4
Nn7g38246 Nelumbo nucifera HOM05D007312 ORTHO05D009209 1.3e-35 153.3 131 63.4
Pp3c7_15740 Physcomitrium patens HOM05D007312 ORTHO05D009209 1.7e-35 152.9 89 78.7
SMO145G0246 Selaginella moellendorffii HOM05D007312 ORTHO05D009209 5.4e-34 147.9 84 78.6
RcHm_v2.0_Chr2g0126261 Rosa chinensis HOM05D007312 ORTHO05D009209 1.6e-30 136.3 101 76.2
Mapoly0066s0018 Marchantia polymorpha HOM05D007312 ORTHO05D009209 6.1e-30 134.4 141 51.1
Cre17.g729950 Chlamydomonas reinhardtii HOM05D007312 ORTHO05D009209 8.8e-29 130.6 85 70.6
Prupe.4G113200 Prunus persica HOM05D007312 ORTHO05D009209 8.8e-29 130.6 95 68.4
CBR_g4 Chara braunii HOM05D007312 ORTHO05D009209 2.8e-27 125.6 85 65.9
Dinv25919 Davidia involucrata HOM05D007312 ORTHO05D009209 2.0e-25 119.4 93 67.7
Oeu056034.1 Olea europaea HOM05D007312 ORTHO05D009209 3.5e-25 118.6 91 67.0
FAN25G0614 Fragaria x ananassa HOM05D007312 ORTHO05D009209 7.8e-25 117.5 97 78.4
HPP92_010191 Vanilla planifolia HOM05D007312 ORTHO05D009209 3.3e-23 112.1 130 51.5
FAN16G3369 Fragaria x ananassa HOM05D007312 ORTHO05D009209 3.4e-20 102.1 81 79.0
FAN21G0246 Fragaria x ananassa HOM05D007312 ORTHO05D009209 4.4e-20 101.7 84 75.0
Thecc.02G008700 Theobroma cacao HOM05D007312 ORTHO05D009209 4.4e-20 101.7 88 62.5
Cpa.g.sc5085.1 Carica papaya HOM05D007312 ORTHO05D009209 1.8e-18 96.3 81 66.7
Gorai.008G048300 Gossypium raimondii HOM05D007312 ORTHO05D009209 9.2e-18 94.0 83 60.2
Gohir.D12G045700 Gossypium hirsutum HOM05D007312 ORTHO05D009209 1.2e-17 93.6 83 60.2
ATR0752G167 Amborella trichopoda HOM05D007312 ORTHO05D009209 2.7e-17 92.4 96 56.2
Sc01g0008940 Simmondsia chinensis HOM05D007312 ORTHO05D009209 2.7e-17 92.4 84 59.5
Sed0015339 Sechium edule HOM05D007312 ORTHO05D009209 3.9e-16 88.6 84 64.3
COL.COLO4_17652 Corchorus olitorius HOM05D007312 ORTHO05D009209 8.6e-16 87.4 87 54.0
Lalb_Chr09g0328681 Lupinus albus HOM05D007312 ORTHO05D009209 5.6e-15 84.7 41 87.8
Sabra12G0063500 Salix brachista HOM05D007312 ORTHO05D009209 2.3e-13 79.3 41 92.7
Lalb_Chr09g0328671 Lupinus albus HOM05D007312 ORTHO05D009209 1.2e-09 67.0 85 44.7
Potri.015G124601 Populus trichocarpa HOM05D007312 ORTHO05D009209 1.3e-08 63.5 42 71.4


User provided reference genes

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