Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G095700 Phaseolus vulgaris HOM05D005341 ORTHO05D006712 2.6e-146 521.9 250 100.0
VMungo0251G3738 Vigna mungo HOM05D005341 ORTHO05D006712 2.4e-139 498.8 250 94.4
Glyma.07G219300 Glycine max HOM05D005341 ORTHO05D006712 1.7e-137 492.7 250 94.0
Glyma.20G017500 Glycine max HOM05D005341 ORTHO05D006712 1.6e-135 486.1 250 92.8
Lj4g0007741 Lotus japonicus HOM05D005341 ORTHO05D006712 3.4e-133 478.4 250 90.4
TPR.G38361 Trifolium pratense HOM05D005341 ORTHO05D006712 9.8e-133 476.9 250 90.0
arahy.Tifrunner.gnm1.ann1.LQU7YY Arachis hypogaea HOM05D005341 ORTHO05D006712 2.8e-132 475.3 250 89.6
Lalb_Chr16g0385061 Lupinus albus HOM05D005341 ORTHO05D006712 4.8e-132 474.6 250 88.4
Psat7g129280 Pisum sativum HOM05D005341 ORTHO05D006712 2.9e-129 465.3 250 88.4
Medtr4g084560 Medicago truncatula HOM05D005341 ORTHO05D006712 2.3e-126 455.7 258 86.0
Actinidia36662 Actinidia chinensis HOM05D005341 ORTHO05D006712 2.2e-124 449.1 250 81.6
CSS0010642 Camellia sinensis var. sinensis HOM05D005341 ORTHO05D006712 2.8e-124 448.7 250 82.8
QL01p001313 Quercus lobata HOM05D005341 ORTHO05D006712 4.9e-124 448.0 248 84.7
Potri.006G222800 Populus trichocarpa HOM05D005341 ORTHO05D006712 1.1e-123 446.8 250 83.2
Dinv14419 Davidia involucrata HOM05D005341 ORTHO05D006712 2.7e-122 442.2 250 82.8
Manes.15G129000 Manihot esculenta HOM05D005341 ORTHO05D006712 2.7e-122 442.2 250 82.8
Atru.chr11.477 Acer truncatum HOM05D005341 ORTHO05D006712 5.9e-122 441.0 250 82.0
GSVIVG01011739001 Vitis vinifera HOM05D005341 ORTHO05D006712 7.7e-122 440.7 247 82.6
Eucgr.B00057 Eucalyptus grandis HOM05D005341 ORTHO05D006712 8.6e-121 437.2 250 81.6
RcHm_v2.0_Chr4g0441521 Rosa chinensis HOM05D005341 ORTHO05D006712 8.6e-121 437.2 248 81.0
Ca_18745_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 2.5e-120 435.6 248 84.7
Peaxi162Scf00159g01021 Petunia axillaris HOM05D005341 ORTHO05D006712 4.3e-120 434.9 247 80.6
Prupe.1G326800 Prunus persica HOM05D005341 ORTHO05D006712 4.3e-120 434.9 248 81.5
Duzib268G0076 Durio zibethinus HOM05D005341 ORTHO05D006712 9.5e-120 433.7 250 80.4
CiPaw.05G196000 Carya illinoinensis HOM05D005341 ORTHO05D006712 1.6e-119 433.0 250 81.6
FAN07G0561 Fragaria x ananassa HOM05D005341 ORTHO05D006712 2.1e-119 432.6 248 79.8
DCAR_007306 Daucus carota HOM05D005341 ORTHO05D006712 2.8e-119 432.2 250 79.6
FvH4_4g32640 Fragaria vesca HOM05D005341 ORTHO05D006712 2.8e-119 432.2 250 80.0
FAN12G2540 Fragaria x ananassa HOM05D005341 ORTHO05D006712 4.7e-119 431.4 248 80.2
MD16G1026600 Malus domestica HOM05D005341 ORTHO05D006712 4.7e-119 431.4 248 80.6
Nn4g24210 Nelumbo nucifera HOM05D005341 ORTHO05D006712 8.0e-119 430.6 250 80.8
FAN22G2374 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.0e-118 430.3 247 79.8
PGR044G1964 Punica granatum HOM05D005341 ORTHO05D006712 1.4e-118 429.9 250 80.4
Lsat_1_v5_gn_4_13500 Lactuca sativa HOM05D005341 ORTHO05D006712 2.3e-118 429.1 250 78.8
COL.COLO4_13155 Corchorus olitorius HOM05D005341 ORTHO05D006712 3.0e-118 428.7 250 79.6
Thecc.02G283300 Theobroma cacao HOM05D005341 ORTHO05D006712 3.0e-118 428.7 250 79.2
CAN.G1298.33 Capsicum annuum HOM05D005341 ORTHO05D006712 5.2e-118 427.9 247 78.9
Cc11_g08490 Coffea canephora HOM05D005341 ORTHO05D006712 8.9e-118 427.2 247 78.1
Sed0016642 Sechium edule HOM05D005341 ORTHO05D006712 1.5e-117 426.4 247 81.0
CDE05G0416 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 2.6e-117 425.6 248 77.0
PGSC0003DMG400018423 Solanum tuberosum HOM05D005341 ORTHO05D006712 3.4e-117 425.2 247 80.2
MD13G1023900 Malus domestica HOM05D005341 ORTHO05D006712 5.7e-117 424.5 248 80.2
ClCG11G001200 Citrullus lanatus HOM05D005341 ORTHO05D006712 9.8e-117 423.7 247 79.8
MSTRG.2162 Avicennia marina HOM05D005341 ORTHO05D006712 1.3e-116 423.3 247 78.9
Gorai.002G178300 Gossypium raimondii HOM05D005341 ORTHO05D006712 1.3e-116 423.3 247 78.9
TWI31G1197 Tripterygium wilfordii HOM05D005341 ORTHO05D006712 1.3e-116 423.3 250 79.6
Gohir.D01G144400 Gossypium hirsutum HOM05D005341 ORTHO05D006712 3.7e-116 421.8 247 78.5
Cpa.g.sc65.157 Carica papaya HOM05D005341 ORTHO05D006712 4.9e-116 421.4 247 79.8
Ciclev10016178m.g Citrus clementina HOM05D005341 ORTHO05D006712 4.9e-116 421.4 250 78.4
Sopen05g003820 Solanum pennellii HOM05D005341 ORTHO05D006712 8.3e-116 420.6 247 78.9
HanXRQChr17g0567271 Helianthus annuus HOM05D005341 ORTHO05D006712 1.1e-115 420.2 250 76.4
Solyc05g007970.4 Solanum lycopersicum HOM05D005341 ORTHO05D006712 1.1e-115 420.2 247 78.5
Duzib251G0346 Durio zibethinus HOM05D005341 ORTHO05D006712 1.4e-115 419.9 250 78.8
CsaV3_5G013260 Cucumis sativus L. HOM05D005341 ORTHO05D006712 3.2e-115 418.7 247 78.9
unitig_27.g25178 Utricularia gibba HOM05D005341 ORTHO05D006712 3.2e-115 418.7 250 77.2
AL5G10480 Arabidopsis lyrata HOM05D005341 ORTHO05D006712 1.6e-114 416.4 248 75.4
Gohir.A01G151200 Gossypium hirsutum HOM05D005341 ORTHO05D006712 1.6e-114 416.4 247 78.1
Sc04g0005370 Simmondsia chinensis HOM05D005341 ORTHO05D006712 2.0e-114 416.0 247 79.4
Ah.02g127780 Amaranthus hybridus HOM05D005341 ORTHO05D006712 2.7e-114 415.6 248 78.6
Carub.0005s0045 Capsella rubella HOM05D005341 ORTHO05D006712 3.5e-114 415.2 247 76.1
Sp2g12940 Schrenkiella parvula HOM05D005341 ORTHO05D006712 7.8e-114 414.1 248 74.6
MELO3C026795.2 Cucumis melo HOM05D005341 ORTHO05D006712 1.3e-113 413.3 247 78.5
Sabra06G0172200 Salix brachista HOM05D005341 ORTHO05D006712 1.3e-113 413.3 279 71.3
Hund24969 Selenicereus undatus HOM05D005341 ORTHO05D006712 1.3e-113 413.3 250 77.6
BcaC03g17044 Brassica carinata HOM05D005341 ORTHO05D006712 1.7e-113 412.9 247 75.7
C02p49590 Brassica napus HOM05D005341 ORTHO05D006712 1.7e-113 412.9 247 75.7
THA.LOC104823806 Tarenaya hassleriana HOM05D005341 ORTHO05D006712 1.7e-113 412.9 250 76.8
TAR622G0920 Trochodendron aralioides HOM05D005341 ORTHO05D006712 1.7e-113 412.9 236 82.2
BolC2t11038H Brassica oleracea HOM05D005341 ORTHO05D006712 2.3e-113 412.5 247 75.3
Thhalv10000985m.g Eutrema salsugineum HOM05D005341 ORTHO05D006712 3.0e-113 412.1 248 73.8
A02p32060 Brassica napus HOM05D005341 ORTHO05D006712 8.6e-113 410.6 247 74.9
BraA02t08217Z Brassica rapa HOM05D005341 ORTHO05D006712 8.6e-113 410.6 247 74.9
Nitab4.5_0000688g0150 Nicotiana tabacum HOM05D005341 ORTHO05D006712 1.5e-112 409.8 239 79.9
AT2G01490 Arabidopsis thaliana HOM05D005341 ORTHO05D006712 1.9e-112 409.5 248 75.0
Lj6A744T53 Lonicera japonica HOM05D005341 ORTHO05D006712 1.9e-112 409.5 252 76.6
PSO478G3305 Papaver somniferum HOM05D005341 ORTHO05D006712 2.5e-112 409.1 248 76.6
ATR0564G155 Amborella trichopoda HOM05D005341 ORTHO05D006712 7.3e-112 407.5 250 74.0
Ca_29576_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 7.3e-112 407.5 235 84.3
CARHR144010 Cardamine hirsuta HOM05D005341 ORTHO05D006712 9.5e-112 407.1 247 74.9
Aqoxy3G00085 Aquilegia oxysepala HOM05D005341 ORTHO05D006712 1.6e-111 406.4 279 69.9
HPP92_005883 Vanilla planifolia HOM05D005341 ORTHO05D006712 1.6e-111 406.4 250 73.6
BcaB07g30394 Brassica carinata HOM05D005341 ORTHO05D006712 2.8e-111 405.6 247 74.5
PSO017G2475 Papaver somniferum HOM05D005341 ORTHO05D006712 1.5e-109 399.8 248 76.2
Aa31LG2G8430 Aethionema arabicum HOM05D005341 ORTHO05D006712 6.4e-108 394.4 255 71.0
AUR62039516 Chenopodium quinoa HOM05D005341 ORTHO05D006712 6.4e-108 394.4 237 78.5
Rhsim09G0096600 Rhododendron simsii HOM05D005341 ORTHO05D006712 4.1e-107 391.7 264 72.0
EL10Ac3g06547 Beta vulgaris HOM05D005341 ORTHO05D006712 1.2e-106 390.2 235 78.3
SHI36659 Sapria himalayana HOM05D005341 ORTHO05D006712 1.6e-106 389.8 236 75.8
AUR62014184 Chenopodium quinoa HOM05D005341 ORTHO05D006712 2.0e-106 389.4 235 77.9
Migut.E00437 Erythranthe guttata HOM05D005341 ORTHO05D006712 2.0e-106 389.4 247 74.5
C09p30150 Brassica napus HOM05D005341 ORTHO05D006712 3.5e-106 388.7 239 72.8
BolC9t55880H Brassica oleracea HOM05D005341 ORTHO05D006712 3.5e-106 388.7 239 72.4
ECA234G4311 Erigeron canadensis HOM05D005341 ORTHO05D006712 3.0e-105 385.6 250 72.0
SalBow8G3124 Salvia bowleyana HOM05D005341 ORTHO05D006712 1.2e-103 380.2 250 72.8
SalBow8G3488 Salvia bowleyana HOM05D005341 ORTHO05D006712 1.2e-103 380.2 250 72.8
Oeu062657.1 Olea europaea HOM05D005341 ORTHO05D006712 2.8e-103 379.0 236 74.6
SEGI_27003 Sequoiadendron giganteum HOM05D005341 ORTHO05D006712 2.8e-103 379.0 250 68.4
Os03g0708100 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 3.1e-102 375.6 247 69.6
Os05g0473900 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 6.8e-102 374.4 247 69.2
Zm00001eb054520 Zea mays HOM05D005341 ORTHO05D006712 8.9e-102 374.0 250 71.6
CANSAT25G0384 Cannabis sativa HOM05D005341 ORTHO05D006712 2.2e-100 369.4 250 70.8
SMO358G0398 Selaginella moellendorffii HOM05D005341 ORTHO05D006712 2.4e-99 365.9 240 68.3
SGA_v2.0_scaffold39G15193 Striga asiatica HOM05D005341 ORTHO05D006712 1.9e-96 356.3 206 80.6
BcaC04g21581 Brassica carinata HOM05D005341 ORTHO05D006712 1.6e-95 353.2 236 68.2
MBI12_g12675_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 1.8e-94 349.7 190 84.2
Zm00001eb216580 Zea mays HOM05D005341 ORTHO05D006712 1.6e-87 326.6 269 60.6
Mapoly0012s0126 Marchantia polymorpha HOM05D005341 ORTHO05D006712 2.0e-85 319.7 242 61.2
vmacro10652 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 9.3e-83 310.8 391 44.8
Pp3c7_14500 Physcomitrium patens HOM05D005341 ORTHO05D006712 1.3e-81 307.0 240 56.2
CBR_g31524 Chara braunii HOM05D005341 ORTHO05D006712 3.3e-80 302.4 267 55.8
Zm00001eb409650 Zea mays HOM05D005341 ORTHO05D006712 4.8e-79 298.5 167 79.6
Zm00001eb341930 Zea mays HOM05D005341 ORTHO05D006712 2.4e-78 296.2 180 74.4
Zm00001eb142690 Zea mays HOM05D005341 ORTHO05D006712 3.1e-78 295.8 167 79.0
Cre16.g673281 Chlamydomonas reinhardtii HOM05D005341 ORTHO05D006712 1.2e-77 293.9 251 55.4
vmacro10649 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 1.4e-75 287.0 384 43.2
AagrBONN_evm.TU.Sc2ySwM_228.566 Anthoceros agrestis HOM05D005341 ORTHO05D006712 3.0e-73 279.3 179 67.6
Oeu018602.1 Olea europaea HOM05D005341 ORTHO05D006712 3.9e-73 278.9 144 84.7
MCO03G480 Micromonas commoda HOM05D005341 ORTHO05D006712 1.4e-67 260.4 244 50.4
Zm00001eb184170 Zea mays HOM05D005341 ORTHO05D006712 3.0e-65 252.7 159 74.2
unitig_29.g31871 Utricularia gibba HOM05D005341 ORTHO05D006712 4.3e-64 248.8 167 68.3
PRCOL_00000921 Prasinoderma coloniale HOM05D005341 ORTHO05D006712 8.4e-60 234.6 262 46.9
A09p23410 Brassica napus HOM05D005341 ORTHO05D006712 8.7e-57 224.6 237 49.8
FAN17G2406 Fragaria x ananassa HOM05D005341 ORTHO05D006712 2.1e-55 219.9 135 76.3
AagrBONN_evm.TU.Sc2ySwM_117.3795 Anthoceros agrestis HOM05D005341 ORTHO05D006712 9.0e-54 214.5 144 62.5
Cfa022618 Carpinus fangiana HOM05D005341 ORTHO05D006712 1.4e-51 207.2 262 42.7
BraA09t37941Z Brassica rapa HOM05D005341 ORTHO05D006712 5.1e-49 198.7 236 47.0
Haze_10982 Corylus avellana HOM05D005341 ORTHO05D006712 5.7e-48 195.3 156 64.1
Haze_27483 Corylus avellana HOM05D005341 ORTHO05D006712 6.7e-41 171.8 223 39.0
Haze_10984 Corylus avellana HOM05D005341 ORTHO05D006712 8.8e-41 171.4 109 74.3
BcaB07g30743 Brassica carinata HOM05D005341 ORTHO05D006712 4.7e-34 149.1 110 61.8
CAN.G651.12 Capsicum annuum HOM05D005428 ORTHO05D006876 4.4e-32 142.5 77 83.1
Zm00001eb025440 Zea mays HOM05D005341 ORTHO05D006712 2.6e-29 133.3 72 77.8
Zm00001eb049700 Zea mays HOM05D005341 ORTHO05D006712 2.6e-29 133.3 72 77.8
RcHm_v2.0_Chr6g0283021 Rosa chinensis HOM05D006769 ORTHO05D008522 3.8e-28 129.4 71 78.9
FAN01G1793 Fragaria x ananassa HOM05D000061 ORTHO05D003487 2.8e-23 113.2 92 60.9
FvH4_3g28840 Fragaria vesca HOM05D005341 ORTHO05D006712 1.1e-22 111.3 80 63.8
FAN18G3043 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.8e-22 110.5 75 68.0
FAN24G2017 Fragaria x ananassa HOM05D005341 ORTHO05D006712 2.4e-22 110.2 76 67.1
Actinidia14980 Actinidia chinensis HOM05D005341 ORTHO05D006712 4.8e-15 85.9 52 75.0
CDE11G1102 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 5.4e-14 82.4 85 52.9
GSVIVG01029848001 Vitis vinifera HOM05D000172 ORTHO05D000273 3.2e-11 73.2 48 70.8
MBI12_g12674_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 9.5e-11 71.6 46 73.9
MCO11G144 Micromonas commoda HOM05D019566 ORTHO05D017343 1.4e-06 57.8 126 29.4
unitig_699.g19475 Utricularia gibba HOM05D005341 ORTHO05D416497 3.1e-06 56.6 50 58.0
FAN21G0384 Fragaria x ananassa HOM05D005341 ORTHO05D006712 4.1e-06 56.2 83 42.2


User provided reference genes

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