Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G094300 Phaseolus vulgaris HOM05D007595 ORTHO05D009570 2.5e-158 563.1 291 100.0
VMungo0251G3282 Vigna mungo HOM05D007595 ORTHO05D009570 7.9e-141 505.0 291 89.3
Glyma.07G218100 Glycine max HOM05D007595 ORTHO05D009570 9.1e-113 411.8 292 74.0
Lalb_Chr16g0384971 Lupinus albus HOM05D007595 ORTHO05D009570 2.0e-96 357.5 293 64.2
Lj1g0026949 Lotus japonicus HOM05D007595 ORTHO05D009570 9.2e-89 332.0 282 62.8
Psat3g072800 Pisum sativum HOM05D007595 ORTHO05D009570 7.5e-83 312.4 260 61.2
Lalb_Chr05g0219501 Lupinus albus HOM05D007595 ORTHO05D009570 3.7e-82 310.1 292 57.5
QL04p026468 Quercus lobata HOM05D007595 ORTHO05D009570 3.6e-77 293.5 264 56.8
Cfa011030 Carpinus fangiana HOM05D007595 ORTHO05D009570 4.7e-77 293.1 256 58.6
Atru.chr5.81 Acer truncatum HOM05D007595 ORTHO05D009570 2.3e-76 290.8 244 58.2
Sed0013429 Sechium edule HOM05D007595 ORTHO05D009570 2.0e-75 287.7 256 55.5
Sabra14G0039800 Salix brachista HOM05D007595 ORTHO05D009570 7.6e-75 285.8 255 56.1
Ciclev10018805m.g Citrus clementina HOM05D007595 ORTHO05D009570 9.9e-75 285.4 285 51.9
TWI59G0156 Tripterygium wilfordii HOM05D007595 ORTHO05D009570 9.9e-75 285.4 275 54.5
Prupe.1G180300 Prunus persica HOM05D007595 ORTHO05D009570 1.7e-74 284.6 288 51.7
MELO3C006272.2 Cucumis melo HOM05D007595 ORTHO05D009570 4.9e-74 283.1 257 53.7
Potri.014G052800 Populus trichocarpa HOM05D007595 ORTHO05D009570 4.9e-74 283.1 255 54.5
CiPaw.13G022600 Carya illinoinensis HOM05D007595 ORTHO05D009570 1.4e-73 281.6 249 57.0
Duzib138G0502 Durio zibethinus HOM05D007595 ORTHO05D009570 3.2e-73 280.4 257 54.5
Manes.01G274800 Manihot esculenta HOM05D007595 ORTHO05D009570 3.2e-73 280.4 254 56.3
CsaV3_3G010510 Cucumis sativus L. HOM05D007595 ORTHO05D009570 5.4e-73 279.6 255 53.7
FAN08G2497 Fragaria x ananassa HOM05D007595 ORTHO05D009570 1.6e-72 278.1 278 52.2
FvH4_5g25080 Fragaria vesca HOM05D007595 ORTHO05D009570 1.3e-71 275.0 256 55.1
ClCG05G002930 Citrullus lanatus HOM05D007595 ORTHO05D009570 2.3e-71 274.2 251 53.8
Medtr7g091470 Medicago truncatula HOM05D007595 ORTHO05D009570 1.1e-70 271.9 251 56.2
Lsat_1_v5_gn_4_38381 Lactuca sativa HOM05D007595 ORTHO05D009570 1.5e-70 271.6 259 53.7
Gohir.A12G098700 Gossypium hirsutum HOM05D007595 ORTHO05D009570 1.1e-68 265.4 246 53.3
CANSAT54G2206 Cannabis sativa HOM05D007595 ORTHO05D009570 5.8e-67 259.6 246 51.6
Sc22g0000140 Simmondsia chinensis HOM05D007595 ORTHO05D009570 5.4e-65 253.1 249 51.4
Sc22g0001280 Simmondsia chinensis HOM05D007595 ORTHO05D009570 5.4e-65 253.1 249 51.4
SHI13644 Sapria himalayana HOM05D007595 ORTHO05D009570 7.1e-65 252.7 265 48.3
Hund27417 Selenicereus undatus HOM05D007595 ORTHO05D009570 9.3e-65 252.3 256 52.7
Peaxi162Scf00793g00032 Petunia axillaris HOM05D007595 ORTHO05D009570 1.6e-64 251.5 286 48.3
THA.LOC104811608 Tarenaya hassleriana HOM05D007595 ORTHO05D009570 1.6e-64 251.5 248 50.8
Glyma.20G014500 Glycine max HOM05D007595 ORTHO05D009570 1.1e-62 245.4 141 83.7
CANSAT25G1659 Cannabis sativa HOM05D007595 ORTHO05D009570 1.9e-62 244.6 244 51.6
Rhsim05G0178700 Rhododendron simsii HOM05D007595 ORTHO05D009570 4.8e-61 240.0 289 46.4
Ca_08452_v3 Cicer arietinum L. HOM05D007595 ORTHO05D009570 4.0e-60 236.9 181 63.5
Ca_08455_v3 Cicer arietinum L. HOM05D007595 ORTHO05D009570 4.0e-60 236.9 181 63.5
vmacro09088 Vaccinium macrocarpon HOM05D007595 ORTHO05D009570 2.0e-59 234.6 246 50.4
Cc02_g25530 Coffea canephora HOM05D007595 ORTHO05D009570 2.6e-59 234.2 204 55.4
CANSAT78G1456 Cannabis sativa HOM05D007595 ORTHO05D009570 3.4e-59 233.8 244 50.4
Sopen01g035520 Solanum pennellii HOM05D007595 ORTHO05D009570 5.8e-59 233.0 285 45.3
AUR62034666 Chenopodium quinoa HOM05D007595 ORTHO05D009570 1.1e-57 228.8 184 58.2
MD02G1222500 Malus domestica HOM05D007595 ORTHO05D009570 1.1e-57 228.8 184 59.2
AUR62008574 Chenopodium quinoa HOM05D007595 ORTHO05D009570 2.4e-57 227.6 184 56.5
RcHm_v2.0_Chr7g0215291 Rosa chinensis HOM05D007595 ORTHO05D009570 2.4e-57 227.6 185 61.1
Haze_02895 Corylus avellana HOM05D007595 ORTHO05D009570 4.2e-57 226.9 175 64.0
COL.COLO4_12359 Corchorus olitorius HOM05D007595 ORTHO05D009570 9.3e-57 225.7 184 57.1
Ah.08g212430 Amaranthus hybridus HOM05D007595 ORTHO05D009570 1.2e-56 225.3 184 56.0
CSS0007679 Camellia sinensis var. sinensis HOM05D007595 ORTHO05D009570 7.9e-56 222.6 184 57.1
CDE04G2406 Ceratophyllum demersum HOM05D007595 ORTHO05D009570 5.1e-55 219.9 241 45.6
Migut.B01494 Erythranthe guttata HOM05D007595 ORTHO05D009570 4.8e-53 213.4 279 44.8
CAN.G756.22 Capsicum annuum HOM05D007595 ORTHO05D009570 8.1e-53 212.6 239 50.2
RcHm_v2.0_Chr4g0407101 Rosa chinensis HOM05D007595 ORTHO05D009570 1.4e-52 211.8 185 57.8
Actinidia05786 Actinidia chinensis HOM05D003161 ORTHO05D009570 1.8e-52 211.5 178 56.7
Oeu004640.1 Olea europaea HOM05D007595 ORTHO05D009570 1.2e-51 208.8 178 54.5
PGSC0003DMG400001689 Solanum tuberosum HOM05D007595 ORTHO05D009570 1.5e-51 208.4 180 55.0
Lj9C550T12 Lonicera japonica HOM05D007595 ORTHO05D009570 3.4e-51 207.2 169 58.0
SalBow5G3719 Salvia bowleyana HOM05D007595 ORTHO05D009570 3.4e-51 207.2 253 45.8
MBI04_g20744_MAGBIO Magnolia biondii HOM05D000404 ORTHO05D001765 5.8e-51 206.5 253 44.7
EL10Ac7g17423 Beta vulgaris HOM05D007595 ORTHO05D009570 9.9e-51 205.7 185 52.4
Nitab4.5_0000563g0010 Nicotiana tabacum HOM05D007595 ORTHO05D009570 1.1e-49 202.2 196 54.6
MSTRG.20666 Avicennia marina HOM05D007595 ORTHO05D009570 2.7e-48 197.6 239 44.8
Dinv44032 Davidia involucrata HOM05D007595 ORTHO05D009570 1.3e-45 188.7 173 54.9
PSO675G4153 Papaver somniferum HOM05D007595 ORTHO05D009570 3.7e-45 187.2 233 44.2
SGA_v2.0_scaffold34G13580 Striga asiatica HOM05D007595 ORTHO05D009570 4.8e-45 186.8 220 43.6
PSO732G0035 Papaver somniferum HOM05D007595 ORTHO05D009570 1.4e-44 185.3 263 40.7
Nitab4.5_0004273g0020 Nicotiana tabacum HOM05D007595 ORTHO05D009570 4.5e-43 180.3 145 58.6
PGR042G2115 Punica granatum HOM05D007595 ORTHO05D009570 7.6e-43 179.5 222 46.8
HanXRQChr14g0457401 Helianthus annuus HOM05D007595 ORTHO05D009570 1.0e-42 179.1 189 52.9
PSO732G0412 Papaver somniferum HOM05D007595 ORTHO05D009570 8.4e-42 176.0 211 45.5
Aqoxy7G02148 Aquilegia oxysepala HOM05D007595 ORTHO05D009570 1.8e-39 168.3 235 41.3
TPR.G3705 Trifolium pratense HOM05D007595 ORTHO05D009570 8.7e-39 166.0 109 70.6
Nn1g00708 Nelumbo nucifera HOM05D007595 ORTHO05D009570 3.3e-38 164.1 223 44.4
Thecc.01G401700 Theobroma cacao HOM05D007595 ORTHO05D009570 3.1e-36 157.5 117 61.5
DCAR_029507 Daucus carota HOM05D007595 ORTHO05D009570 4.1e-36 157.1 149 49.7
Aa31LG1G28920 Aethionema arabicum HOM05D007595 ORTHO05D009570 5.3e-36 156.8 141 51.8
Gohir.D12G101900 Gossypium hirsutum HOM05D007595 ORTHO05D009570 3.5e-32 144.1 117 58.1
TAR629G2414 Trochodendron aralioides HOM05D007595 ORTHO05D009570 8.7e-31 139.4 126 51.6
Rhsim07G0038800 Rhododendron simsii HOM05D007595 ORTHO05D009570 2.5e-30 137.9 150 45.3
RcHm_v2.0_Chr4g0407111 Rosa chinensis HOM05D007595 ORTHO05D009570 3.8e-26 124.0 92 63.0
ECA234G2641 Erigeron canadensis HOM05D007595 ORTHO05D009570 8.5e-26 122.9 116 50.9
GSVIVG01018339001 Vitis vinifera HOM05D007595 ORTHO05D009570 6.7e-23 113.2 92 55.4
Gorai.008G111100 Gossypium raimondii HOM05D007595 ORTHO05D009570 1.3e-21 109.0 91 56.0
HPP92_014879 Vanilla planifolia HOM05D007595 ORTHO05D009570 9.1e-20 102.8 242 33.5
Cc11_g12050 Coffea canephora HOM05D007595 ORTHO05D009570 9.4e-17 92.8 78 53.8
AUR62026015 Chenopodium quinoa HOM05D007595 ORTHO05D009570 1.1e-12 79.3 201 30.8
Carub.0005s0122 Capsella rubella HOM05D007496 ORTHO05D009479 1.2e-11 75.9 237 26.2
AT2G02150 Arabidopsis thaliana HOM05D007496 ORTHO05D009479 2.2e-10 71.6 174 28.2
Sp2g13565 Schrenkiella parvula HOM05D007496 ORTHO05D009479 2.5e-09 68.2 158 25.9
CANSAT54G2917 Cannabis sativa HOM05D005287 ORTHO05D006893 3.2e-09 67.8 234 23.1
Prupe.2G218100 Prunus persica HOM05D005287 ORTHO05D006893 3.2e-09 67.8 234 26.1
Thhalv10003688m.g Eutrema salsugineum HOM05D007496 ORTHO05D009479 5.5e-09 67.0 185 24.9
AL5G11430 Arabidopsis lyrata HOM05D007496 ORTHO05D009479 1.2e-08 65.9 174 25.9
SEGI_19561 Sequoiadendron giganteum HOM05D007496 ORTHO05D009431 1.6e-08 65.5 96 29.2
ECA233G1899 Erigeron canadensis HOM05D000630 ORTHO05D001413 6.1e-08 63.5 143 29.4
THA.LOC104817005 Tarenaya hassleriana HOM05D000104 ORTHO05D009920 1.4e-07 62.4 103 30.1
PGR142G4068 Punica granatum HOM05D005287 ORTHO05D006893 1.8e-07 62.0 108 32.4
QL08p056824 Quercus lobata HOM05D005287 ORTHO05D006893 1.8e-07 62.0 146 26.0
MD01G1131000 Malus domestica HOM05D005287 ORTHO05D006893 2.3e-07 61.6 233 23.6
Manes.10G042800 Manihot esculenta HOM05D005287 ORTHO05D006893 2.3e-07 61.6 199 26.6
Nitab4.5_0001130g0070 Nicotiana tabacum HOM05D000104 ORTHO05D009920 2.3e-07 61.6 84 33.3
ClCG02G013900 Citrullus lanatus HOM05D005287 ORTHO05D006893 4.0e-07 60.8 107 29.0
Dinv21881 Davidia involucrata HOM05D000104 ORTHO05D009920 4.0e-07 60.8 103 30.1
Migut.F00552 Erythranthe guttata HOM05D000104 ORTHO05D009920 4.0e-07 60.8 99 30.3
Lj5g0006814 Lotus japonicus HOM05D005287 ORTHO05D006893 4.0e-07 60.8 116 30.2
Rhsim04G0012100 Rhododendron simsii HOM05D007390 ORTHO05D009114 5.2e-07 60.5 154 24.7
AL8G31410 Arabidopsis lyrata HOM05D007390 ORTHO05D009114 6.7e-07 60.1 157 22.9
Eucgr.D01185 Eucalyptus grandis HOM05D007595 ORTHO05D009570 6.7e-07 60.1 54 48.1
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 6.7e-07 60.1 116 28.4
Nitab4.5_0000103g0110 Nicotiana tabacum HOM05D000104 ORTHO05D009920 6.7e-07 60.1 84 33.3
Solyc03g095200.1 Solanum lycopersicum HOM05D000104 ORTHO05D009920 6.7e-07 60.1 84 33.3
Sopen03g025210 Solanum pennellii HOM05D000104 ORTHO05D009920 6.7e-07 60.1 84 33.3
MELO3C035731.2 Cucumis melo HOM05D002890 ORTHO05D009847 8.8e-07 59.7 165 24.8
Hma1.2p1_1014F.1_g247820 Hydrangea macrophylla HOM05D000104 ORTHO05D009920 8.8e-07 59.7 99 30.3
SalBow5G0095 Salvia bowleyana HOM05D007545 ORTHO05D009579 8.8e-07 59.7 150 23.3
SHI08859 Sapria himalayana HOM05D005287 ORTHO05D006893 1.1e-06 59.3 106 30.2
Sed0010805 Sechium edule HOM05D002890 ORTHO05D009847 1.1e-06 59.3 178 24.2
vmacro09644 Vaccinium macrocarpon HOM05D007390 ORTHO05D009114 1.1e-06 59.3 136 25.0
Aqoxy6G01416 Aquilegia oxysepala HOM05D006858 ORTHO05D008767 1.5e-06 58.9 149 26.8
Solyc02g080170.1 Solanum lycopersicum HOM05D007956 ORTHO05D010152 1.5e-06 58.9 205 24.9
MBI05_g05281_MAGBIO Magnolia biondii HOM05D002890 ORTHO05D009847 2.0e-06 58.5 146 26.7
PGSC0003DMG400002071 Solanum tuberosum HOM05D007956 ORTHO05D010152 2.0e-06 58.5 205 24.9
MSTRG.8165 Avicennia marina HOM05D005287 ORTHO05D006893 2.6e-06 58.2 109 30.3
BraA06t27256Z Brassica rapa HOM05D007496 ORTHO05D009479 2.6e-06 58.2 135 29.6
MELO3C011729.2 Cucumis melo HOM05D005287 ORTHO05D006893 2.6e-06 58.2 141 25.5
Gohir.D08G158800 Gossypium hirsutum HOM05D000104 ORTHO05D008354 2.6e-06 58.2 112 27.7
Gorai.004G164900 Gossypium raimondii HOM05D000104 ORTHO05D008354 2.6e-06 58.2 112 27.7
Eucgr.D00277 Eucalyptus grandis HOM05D000104 ORTHO05D009920 3.3e-06 57.8 99 29.3
Lj6A773T130 Lonicera japonica HOM05D007623 ORTHO05D009641 3.3e-06 57.8 135 26.7
Sed0021424 Sechium edule HOM05D005287 ORTHO05D006893 3.3e-06 57.8 107 29.0
Duzib132G0284 Durio zibethinus HOM05D006858 ORTHO05D008767 4.4e-06 57.4 137 25.5
QL04p034761 Quercus lobata HOM05D000104 ORTHO05D009920 4.4e-06 57.4 186 23.7
Thecc.01G387700 Theobroma cacao HOM05D000104 ORTHO05D009920 4.4e-06 57.4 112 27.7
A06p43780 Brassica napus HOM05D007496 ORTHO05D009479 5.7e-06 57.0 135 27.4
CiPaw.13G029800 Carya illinoinensis HOM05D000104 ORTHO05D009920 5.7e-06 57.0 112 25.9
Lj8P179T40 Lonicera japonica HOM05D007390 ORTHO05D009114 5.7e-06 57.0 145 25.5
SGA_v2.0_scaffold122G33244 Striga asiatica HOM05D005287 ORTHO05D006893 5.7e-06 57.0 109 29.4
arahy.Tifrunner.gnm1.ann1.UN0AT6 Arachis hypogaea HOM05D007496 ORTHO05D009479 7.5e-06 56.6 162 29.0
BcaC06g31248 Brassica carinata HOM05D007496 ORTHO05D009479 7.5e-06 56.6 166 26.5
Oeu013687.1 Olea europaea HOM05D006858 ORTHO05D008767 7.5e-06 56.6 147 23.1
Oeu024268.1 Olea europaea HOM05D000104 ORTHO05D009920 7.5e-06 56.6 99 28.3
CiPaw.01G118600 Carya illinoinensis HOM05D007291 ORTHO05D009038 9.7e-06 56.2 190 21.6
MD07G1179000 Malus domestica HOM05D005287 ORTHO05D006893 9.7e-06 56.2 107 29.9
RcHm_v2.0_Chr1g0364091 Rosa chinensis HOM05D005287 ORTHO05D006893 9.7e-06 56.2 107 29.0


User provided reference genes

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