Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G093600 Phaseolus vulgaris HOM05D003830 ORTHO05D004446 7.5e-80 300.4 150 100.0
Phvul.001G259600 Phaseolus vulgaris HOM05D003830 ORTHO05D004446 6.2e-58 227.6 176 70.5
VMungo1383G3029 Vigna mungo HOM05D003830 ORTHO05D004446 1.5e-56 223.0 177 68.4
Glyma.11G248200 Glycine max HOM05D003830 ORTHO05D004446 6.4e-55 217.6 177 66.1
Glyma.18G009000 Glycine max HOM05D003830 ORTHO05D004446 1.1e-54 216.9 176 66.5
Ca_16482_v3 Cicer arietinum L. HOM05D003830 ORTHO05D004446 7.6e-48 194.1 178 61.2
Lalb_Chr08g0230701 Lupinus albus HOM05D003830 ORTHO05D004446 4.2e-46 188.3 178 59.6
Lalb_Chr23g0277961 Lupinus albus HOM05D003830 ORTHO05D004446 5.4e-46 188.0 178 59.6
Phvul.002G176100 Phaseolus vulgaris HOM05D003830 ORTHO05D004446 1.2e-45 186.8 170 60.6
Potri.010G056200 Populus trichocarpa HOM05D003830 ORTHO05D004446 2.1e-45 186.0 178 57.9
VMungo0251G0774 Vigna mungo HOM05D003830 ORTHO05D004446 6.0e-45 184.5 170 60.0
Sabra10G0048900 Salix brachista HOM05D003830 ORTHO05D004446 3.0e-44 182.2 178 56.7
Manes.12G014700 Manihot esculenta HOM05D003830 ORTHO05D004446 8.7e-44 180.6 178 57.9
TPR.G22439 Trifolium pratense HOM05D003830 ORTHO05D004446 1.5e-43 179.9 166 59.0
Lj4g0001101 Lotus japonicus HOM05D003830 ORTHO05D004446 5.6e-43 177.9 170 58.2
Manes.13G015800 Manihot esculenta HOM05D003830 ORTHO05D004446 7.3e-43 177.6 178 56.2
Psat5g094600 Pisum sativum HOM05D003830 ORTHO05D004446 1.3e-42 176.8 178 56.7
COL.COLO4_23621 Corchorus olitorius HOM05D003830 ORTHO05D004446 1.6e-42 176.4 178 56.2
ClCG08G017300 Citrullus lanatus HOM05D003830 ORTHO05D004446 2.8e-42 175.6 180 56.1
Atru.chr11.2246 Acer truncatum HOM05D003830 ORTHO05D004446 6.2e-42 174.5 178 53.9
Atru.chr11.2261 Acer truncatum HOM05D003830 ORTHO05D004446 6.2e-42 174.5 178 53.9
arahy.Tifrunner.gnm1.ann1.D6D033 Arachis hypogaea HOM05D003830 ORTHO05D004446 1.4e-41 173.3 188 54.3
Ciclev10030548m.g Citrus clementina HOM05D003830 ORTHO05D004446 1.8e-41 172.9 178 53.4
Thecc.02G274300 Theobroma cacao HOM05D003830 ORTHO05D004446 2.4e-41 172.6 178 55.6
GSVIVG01010345001 Vitis vinifera HOM05D003830 ORTHO05D004446 2.4e-41 172.6 178 54.5
CiPaw.05G115100 Carya illinoinensis HOM05D003830 ORTHO05D004446 3.1e-41 172.2 177 55.4
CsaV3_2G025330 Cucumis sativus L. HOM05D003830 ORTHO05D004446 4.0e-41 171.8 179 55.3
Potri.008G178600 Populus trichocarpa HOM05D003830 ORTHO05D004446 4.0e-41 171.8 178 54.5
Prupe.1G233200 Prunus persica HOM05D003830 ORTHO05D004446 6.9e-41 171.0 178 53.9
MD16G1111800 Malus domestica HOM05D003830 ORTHO05D004446 9.0e-41 170.6 178 53.9
Cfa009315 Carpinus fangiana HOM05D003830 ORTHO05D008363 2.0e-40 169.5 179 54.2
Hma1.2p1_0167F.1_g073780 Hydrangea macrophylla HOM05D003830 ORTHO05D004446 2.6e-40 169.1 178 54.5
TWI18G0501 Tripterygium wilfordii HOM05D003830 ORTHO05D004446 4.5e-40 168.3 178 55.6
Peaxi162Scf00128g00924 Petunia axillaris HOM05D003830 ORTHO05D004446 5.8e-40 167.9 181 54.7
Dinv14800 Davidia involucrata HOM05D003830 ORTHO05D004446 7.6e-40 167.5 178 54.5
PGSC0003DMG400017461 Solanum tuberosum HOM05D003830 ORTHO05D004446 7.6e-40 167.5 181 55.2
Gohir.A03G128600 Gossypium hirsutum HOM05D003830 ORTHO05D004446 9.9e-40 167.2 178 53.9
Gohir.D02G152400 Gossypium hirsutum HOM05D003830 ORTHO05D004446 9.9e-40 167.2 178 53.9
Gorai.005G171400 Gossypium raimondii HOM05D003830 ORTHO05D004446 9.9e-40 167.2 178 53.9
MD13G1112200 Malus domestica HOM05D003830 ORTHO05D004446 9.9e-40 167.2 177 53.1
arahy.Tifrunner.gnm1.ann1.ZS76EK Arachis hypogaea HOM05D003830 ORTHO05D004446 1.7e-39 166.4 195 52.3
CANSAT01G2001 Cannabis sativa HOM05D003830 ORTHO05D004446 1.7e-39 166.4 180 55.6
CSS0000134 Camellia sinensis var. sinensis HOM05D003830 ORTHO05D004446 2.2e-39 166.0 178 53.4
Nn4g22404 Nelumbo nucifera HOM05D003830 ORTHO05D004446 2.2e-39 166.0 179 54.2
Nn3g16538 Nelumbo nucifera HOM05D003830 ORTHO05D004446 2.9e-39 165.6 178 53.4
Duzib268G1283 Durio zibethinus HOM05D003830 ORTHO05D004446 3.8e-39 165.2 169 55.6
QL03p054734 Quercus lobata HOM05D003830 ORTHO05D004446 3.8e-39 165.2 169 55.0
Solyc05g014640.3 Solanum lycopersicum HOM05D003830 ORTHO05D004446 3.8e-39 165.2 181 54.7
Sopen05g009770 Solanum pennellii HOM05D003830 ORTHO05D004446 3.8e-39 165.2 181 54.7
TAR622G0818 Trochodendron aralioides HOM05D003830 ORTHO05D004446 1.1e-38 163.7 178 52.8
Actinidia25761 Actinidia chinensis HOM05D003830 ORTHO05D004446 1.4e-38 163.3 176 54.5
CSS0032396 Camellia sinensis var. sinensis HOM05D003830 ORTHO05D004446 1.4e-38 163.3 169 55.0
RcHm_v2.0_Chr4g0431121 Rosa chinensis HOM05D003830 ORTHO05D004446 1.4e-38 163.3 177 53.1
Sabra08G0136300 Salix brachista HOM05D003830 ORTHO05D004446 1.4e-38 163.3 178 52.2
TWI36G0084 Tripterygium wilfordii HOM05D003830 ORTHO05D004446 1.4e-38 163.3 177 54.2
FvH4_4g24320 Fragaria vesca HOM05D003830 ORTHO05D004446 1.9e-38 162.9 177 53.1
FAN12G3820 Fragaria x ananassa HOM05D003830 ORTHO05D004446 4.2e-38 161.8 177 53.1
FAN22G2024 Fragaria x ananassa HOM05D003830 ORTHO05D004446 9.3e-38 160.6 177 52.0
Glyma.08G102200 Glycine max HOM05D003830 ORTHO05D004446 9.3e-38 160.6 170 54.1
Dinv10992 Davidia involucrata HOM05D003830 ORTHO05D004446 1.2e-37 160.2 178 52.8
Lalb_Chr11g0075691 Lupinus albus HOM05D003830 ORTHO05D004446 1.6e-37 159.8 173 55.5
Duzib248G1684 Durio zibethinus HOM05D003830 ORTHO05D004446 2.7e-37 159.1 178 52.8
TAR629G0808 Trochodendron aralioides HOM05D003830 ORTHO05D004446 3.5e-37 158.7 178 51.7
TWI75G0226 Tripterygium wilfordii HOM05D003830 ORTHO05D004446 1.3e-36 156.8 178 52.2
Rhsim12G0030500 Rhododendron simsii HOM05D003830 ORTHO05D004446 1.8e-36 156.4 165 54.5
Rhsim12G0031400 Rhododendron simsii HOM05D003830 ORTHO05D004446 1.8e-36 156.4 165 54.5
SalBow2G2689 Salvia bowleyana HOM05D003830 ORTHO05D004446 1.8e-36 156.4 170 51.2
CAN.G692.1 Capsicum annuum HOM05D003830 ORTHO05D004446 2.3e-36 156.0 181 52.5
PGR102G1232 Punica granatum HOM05D003830 ORTHO05D004446 3.0e-36 155.6 167 52.7
Migut.K00697 Erythranthe guttata HOM05D003830 ORTHO05D004446 3.9e-36 155.2 170 50.0
Aqoxy3G01454 Aquilegia oxysepala HOM05D003830 ORTHO05D004446 5.1e-36 154.8 177 50.3
Cc11_g16600 Coffea canephora HOM05D003830 ORTHO05D004446 6.7e-36 154.5 169 52.7
MELO3C010729.2 Cucumis melo HOM05D003830 ORTHO05D004446 6.7e-36 154.5 179 51.4
TAR374G0580 Trochodendron aralioides HOM05D003830 ORTHO05D004446 6.7e-36 154.5 178 50.6
FAN17G1537 Fragaria x ananassa HOM05D003830 ORTHO05D004446 1.1e-35 153.7 179 51.4
Hma1.2p1_1340F.1_g276740 Hydrangea macrophylla HOM05D003830 ORTHO05D004446 1.5e-35 153.3 169 52.1
vmacro01085 Vaccinium macrocarpon HOM05D003830 ORTHO05D004446 4.3e-35 151.8 179 51.4
Eucgr.H04665 Eucalyptus grandis HOM05D003830 ORTHO05D004446 5.6e-35 151.4 155 55.5
Sp1g24060 Schrenkiella parvula HOM05D003830 ORTHO05D004446 1.6e-34 149.8 178 50.6
BraA09t39341Z Brassica rapa HOM05D003830 ORTHO05D004446 2.1e-34 149.4 178 52.2
Sc11g0000660 Simmondsia chinensis HOM05D003830 ORTHO05D004446 2.1e-34 149.4 165 50.9
Oeu038669.1 Olea europaea HOM05D003830 ORTHO05D004446 3.7e-34 148.7 178 48.3
Thhalv10006616m.g Eutrema salsugineum HOM05D003830 ORTHO05D004446 4.8e-34 148.3 178 51.1
Aa31sc109G20 Aethionema arabicum HOM05D003830 ORTHO05D004446 6.2e-34 147.9 179 50.3
DCAR_024085 Daucus carota HOM05D003830 ORTHO05D004446 6.2e-34 147.9 176 48.9
AT1G27850 Arabidopsis thaliana HOM05D003830 ORTHO05D004446 1.1e-33 147.1 178 51.1
MSTRG.524 Avicennia marina HOM05D003830 ORTHO05D004446 1.8e-33 146.4 177 49.2
CARHR027310 Cardamine hirsuta HOM05D003830 ORTHO05D004446 1.8e-33 146.4 178 51.1
EL10Ac6g13438 Beta vulgaris HOM05D003830 ORTHO05D004446 2.4e-33 146.0 178 48.9
MSTRG.7981 Avicennia marina HOM05D003830 ORTHO05D004446 3.1e-33 145.6 179 48.6
AUR62005571 Chenopodium quinoa HOM05D003830 ORTHO05D004446 3.1e-33 145.6 178 50.0
AUR62024159 Chenopodium quinoa HOM05D003830 ORTHO05D004446 3.1e-33 145.6 178 50.0
HanXRQChr17g0569161 Helianthus annuus HOM05D003830 ORTHO05D004446 3.1e-33 145.6 165 50.3
BcaC05g26779 Brassica carinata HOM05D003830 ORTHO05D004446 4.0e-33 145.2 178 51.1
Carub.0001s2631 Capsella rubella HOM05D003830 ORTHO05D004446 4.0e-33 145.2 176 51.1
AL1G41340 Arabidopsis lyrata HOM05D003830 ORTHO05D004446 5.3e-33 144.8 178 50.6
BraA08t34553Z Brassica rapa HOM05D003830 ORTHO05D004446 6.9e-33 144.4 179 52.0
A08p26030 Brassica napus HOM05D003830 ORTHO05D004446 1.2e-32 143.7 179 51.4
Oeu041685.1 Olea europaea HOM05D003830 ORTHO05D004446 2.0e-32 142.9 168 48.8
C03p74620 Brassica napus HOM05D003830 ORTHO05D004446 5.8e-32 141.4 179 50.8
ECA234G2423 Erigeron canadensis HOM05D003830 ORTHO05D004446 5.8e-32 141.4 170 48.8
Actinidia33257 Actinidia chinensis HOM05D003830 ORTHO05D004446 7.6e-32 141.0 120 65.0
ATR0609G075 Amborella trichopoda HOM05D003830 ORTHO05D004446 7.6e-32 141.0 185 49.7
HanXRQChr08g0207491 Helianthus annuus HOM05D003830 ORTHO05D004446 7.6e-32 141.0 162 50.0
BolC5t31369H Brassica oleracea HOM05D003830 ORTHO05D004446 1.3e-31 140.2 181 51.9
BolC3t19710H Brassica oleracea HOM05D003830 ORTHO05D004446 3.8e-31 138.7 179 50.8
Lsat_1_v5_gn_8_150260 Lactuca sativa HOM05D003830 ORTHO05D004446 6.4e-31 137.9 169 47.3
THA.LOC104825519 Tarenaya hassleriana HOM05D003830 ORTHO05D004446 1.1e-30 137.1 170 49.4
arahy.Tifrunner.gnm1.ann1.MTFP9U Arachis hypogaea HOM05D003830 ORTHO05D004446 1.9e-30 136.3 177 46.3
PSO063G3359 Papaver somniferum HOM05D003830 ORTHO05D004446 3.2e-30 135.6 178 48.3
Duzib251G0504 Durio zibethinus HOM05D003830 ORTHO05D004446 5.5e-30 134.8 109 65.1
A09p38310 Brassica napus HOM05D003830 ORTHO05D004446 9.3e-30 134.0 204 45.1
PSO782G2541 Papaver somniferum HOM05D003830 ORTHO05D004446 2.1e-29 132.9 178 47.2
SalBow8G5205 Salvia bowleyana HOM05D003830 ORTHO05D004446 1.0e-28 130.6 170 44.7
C05p26490 Brassica napus HOM05D003830 ORTHO05D004446 1.3e-28 130.2 204 45.6
Oeu056685.2 Olea europaea HOM05D003830 ORTHO05D004446 1.3e-28 130.2 169 47.9
ECA233G0646 Erigeron canadensis HOM05D003830 ORTHO05D004446 6.7e-28 127.9 166 46.4
Lj6C822T9 Lonicera japonica HOM05D003830 ORTHO05D004446 1.1e-27 127.1 176 46.0
Sed0027794 Sechium edule HOM05D003830 ORTHO05D004446 1.9e-27 126.3 105 63.8
SGA_v2.0_scaffold391G50642 Striga asiatica HOM05D003830 ORTHO05D004446 1.6e-26 123.2 164 43.9
arahy.Tifrunner.gnm1.ann1.JB8DT0 Arachis hypogaea HOM05D003830 ORTHO05D004446 1.1e-25 120.6 166 45.2
Migut.E00239 Erythranthe guttata HOM05D003830 ORTHO05D004446 1.1e-25 120.6 170 43.5
Os12g0239000 Oryza sativa ssp. japonica HOM05D003830 ORTHO05D004446 1.7e-23 113.2 176 44.9
DCAR_007014 Daucus carota HOM05D003830 ORTHO05D004446 6.5e-23 111.3 113 51.3
MBI08_g41743_MAGBIO Magnolia biondii HOM05D003830 ORTHO05D004446 2.1e-21 106.3 191 40.8
Hund06065 Selenicereus undatus HOM05D003830 ORTHO05D004446 2.1e-21 106.3 216 37.0
CDE04G3030 Ceratophyllum demersum HOM05D003830 ORTHO05D004446 2.7e-21 105.9 170 41.2
Os12g0239200 Oryza sativa ssp. japonica HOM05D003830 ORTHO05D004446 1.3e-20 103.6 166 45.2
PSO063G5558 Papaver somniferum HOM05D003830 ORTHO05D004446 1.3e-20 103.6 165 40.0
Nitab4.5_0000240g0070 Nicotiana tabacum HOM05D003830 ORTHO05D004446 6.7e-20 101.3 178 40.4
Zm00001eb133500 Zea mays HOM05D003830 ORTHO05D004446 6.7e-20 101.3 171 39.2
Nitab4.5_0011772g0020 Nicotiana tabacum HOM05D003830 ORTHO05D004446 1.9e-19 99.8 178 39.9
SHI17938 Sapria himalayana HOM05D003830 ORTHO05D004446 7.4e-19 97.8 188 36.7
HPP92_006184 Vanilla planifolia HOM05D003830 ORTHO05D004446 9.7e-19 97.4 119 51.3
SEGI_06277 Sequoiadendron giganteum HOM05D003830 ORTHO05D004446 1.6e-18 96.7 167 38.9
CDE07G1392 Ceratophyllum demersum HOM05D003830 ORTHO05D004446 6.3e-18 94.7 91 53.8
unitig_699.g19949 Utricularia gibba HOM05D003830 ORTHO05D004446 1.4e-17 93.6 179 38.0
HPP92_004598 Vanilla planifolia HOM05D003830 ORTHO05D004446 1.0e-15 87.4 168 42.9
SGA_v2.0_scaffold87G27127 Striga asiatica HOM05D003830 ORTHO05D004446 1.7e-15 86.7 168 37.5
Zm00001eb409890 Zea mays HOM05D003830 ORTHO05D004446 6.5e-15 84.7 90 52.2
Actinidia30675 Actinidia chinensis HOM05D003830 ORTHO05D004446 1.3e-10 70.5 91 44.0
unitig_22.g6413 Utricularia gibba HOM05D003830 ORTHO05D004446 5.3e-09 65.1 149 33.6
Gohir.D04G067400 Gossypium hirsutum HOM05D001930 ORTHO05D001345 2.9e-07 59.3 73 41.1
Gorai.012G076400 Gossypium raimondii HOM05D001930 ORTHO05D001345 2.9e-07 59.3 73 41.1
Nn2g11456 Nelumbo nucifera HOM05D001930 ORTHO05D001345 2.9e-07 59.3 93 38.7
CAN.G301.5 Capsicum annuum HOM05D001930 ORTHO05D001345 5.0e-07 58.5 92 39.1
Lsat_1_v5_gn_8_12340 Lactuca sativa HOM05D001930 ORTHO05D001345 6.5e-07 58.2 138 31.2
Pp3c17_22500 Physcomitrium patens HOM05D003830 ORTHO05D004446 6.5e-07 58.2 126 34.1
Pp3c17_22550 Physcomitrium patens HOM05D003830 ORTHO05D004446 6.5e-07 58.2 126 34.1
Mapoly0001s0565 Marchantia polymorpha HOM05D003830 ORTHO05D004446 8.5e-07 57.8 126 34.9
Rhsim03G0142000 Rhododendron simsii HOM05D001930 ORTHO05D001345 1.9e-06 56.6 93 37.6
MBI14_g28262_MAGBIO Magnolia biondii HOM05D001930 ORTHO05D001345 3.2e-06 55.8 89 38.2
Actinidia13930 Actinidia chinensis HOM05D001930 ORTHO05D001345 4.2e-06 55.5 79 39.2
AT2G40070 Arabidopsis thaliana HOM05D001930 ORTHO05D001345 4.2e-06 55.5 143 32.2
Sopen03g026190 Solanum pennellii HOM05D001930 ORTHO05D001345 4.2e-06 55.5 91 38.5
Actinidia00941 Actinidia chinensis HOM05D001930 ORTHO05D001345 5.5e-06 55.1 79 39.2
CDE04G2671 Ceratophyllum demersum HOM05D001930 ORTHO05D001345 5.5e-06 55.1 136 31.6
Duzib114G0676 Durio zibethinus HOM05D001930 ORTHO05D001345 5.5e-06 55.1 79 38.0
MBI05_g34494_MAGBIO Magnolia biondii HOM05D001930 ORTHO05D001345 7.2e-06 54.7 74 39.2
MD12G1191700 Malus domestica HOM05D004711 ORTHO05D005594 7.2e-06 54.7 149 28.9
Nitab4.5_0008493g0010 Nicotiana tabacum HOM05D001930 ORTHO05D001345 7.2e-06 54.7 91 34.1
SalBow6G0604 Salvia bowleyana HOM05D001930 ORTHO05D001345 7.2e-06 54.7 87 37.9
BcaB02g09056 Brassica carinata HOM05D001930 ORTHO05D001345 9.4e-06 54.3 130 32.3
DCAR_028566 Daucus carota HOM05D001930 ORTHO05D001345 9.4e-06 54.3 92 38.0
Manes.07G128300 Manihot esculenta HOM05D001930 ORTHO05D001345 9.4e-06 54.3 93 35.5
SGA_v2.0_scaffold44G16687 Striga asiatica HOM05D001930 ORTHO05D001345 9.4e-06 54.3 98 34.7


User provided reference genes

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