Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G090800 Phaseolus vulgaris HOM05D004550 ORTHO05D005340 6.0e-132 474.2 237 100.0
VMungo1215G2831 Vigna mungo HOM05D004550 ORTHO05D005340 3.4e-127 458.4 237 96.6
Glyma.01G054200 Glycine max HOM05D004550 ORTHO05D005340 8.4e-118 427.2 234 91.9
Glyma.02G112600 Glycine max HOM05D004550 ORTHO05D005340 4.2e-117 424.9 232 92.7
Lalb_Chr17g0340931 Lupinus albus HOM05D004550 ORTHO05D005340 4.6e-100 368.2 233 83.3
arahy.Tifrunner.gnm1.ann1.M1L69X Arachis hypogaea HOM05D004550 ORTHO05D005340 4.3e-98 361.7 234 79.9
Lj2g0016497 Lotus japonicus HOM05D004550 ORTHO05D005340 9.7e-98 360.5 236 79.2
Ca_27938_v3 Cicer arietinum L. HOM05D004550 ORTHO05D005340 1.1e-96 357.1 236 80.9
Medtr5g043020 Medicago truncatula HOM05D004550 ORTHO05D005340 1.0e-94 350.5 234 78.2
Lalb_Chr04g0255821 Lupinus albus HOM05D004550 ORTHO05D005340 8.5e-94 347.4 232 78.0
TPR.G30749 Trifolium pratense HOM05D004550 ORTHO05D005340 9.7e-90 334.0 231 76.2
Psat2g127440 Pisum sativum HOM05D004550 ORTHO05D005340 1.3e-89 333.6 237 72.6
arahy.Tifrunner.gnm1.ann1.F9ESEJ Arachis hypogaea HOM05D004550 ORTHO05D005340 2.0e-87 326.2 204 81.4
QL03p070023 Quercus lobata HOM05D004550 ORTHO05D005340 3.2e-85 318.9 232 70.3
Cfa008917 Carpinus fangiana HOM05D004550 ORTHO05D005340 1.0e-83 313.9 232 69.4
CiPaw.06G089400 Carya illinoinensis HOM05D004550 ORTHO05D005340 3.0e-83 312.4 231 70.1
CiPaw.05G128700 Carya illinoinensis HOM05D004550 ORTHO05D005340 2.2e-81 306.2 231 67.5
Duzib268G1083 Durio zibethinus HOM05D004550 ORTHO05D005340 3.7e-81 305.4 232 68.1
Duzib251G0963 Durio zibethinus HOM05D004550 ORTHO05D005340 8.2e-81 304.3 232 69.0
TWI31G0520 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 2.4e-80 302.8 232 69.4
Atru.chr11.1702 Acer truncatum HOM05D004550 ORTHO05D005340 4.1e-80 302.0 232 69.4
Dinv34106 Davidia involucrata HOM05D004550 ORTHO05D005340 6.5e-78 294.7 232 68.1
Eucgr.B03186 Eucalyptus grandis HOM05D004550 ORTHO05D005340 6.5e-78 294.7 233 65.7
Ciclev10032704m.g Citrus clementina HOM05D004550 ORTHO05D005340 1.5e-77 293.5 232 68.5
Rhsim12G0077600 Rhododendron simsii HOM05D004550 ORTHO05D005340 1.9e-77 293.1 231 66.2
CSS0021997 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 2.5e-77 292.7 232 68.1
TWI79G1514 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 2.5e-77 292.7 232 66.8
RcHm_v2.0_Chr4g0438981 Rosa chinensis HOM05D004550 ORTHO05D005340 3.2e-77 292.4 232 68.5
FvH4_4g30590 Fragaria vesca HOM05D004550 ORTHO05D005340 5.5e-77 291.6 232 67.7
Gohir.D12G165500 Gossypium hirsutum HOM05D004550 ORTHO05D005340 9.4e-77 290.8 232 66.4
Gorai.008G178200 Gossypium raimondii HOM05D004550 ORTHO05D005340 9.4e-77 290.8 232 66.4
TAR629G0577 Trochodendron aralioides HOM05D004550 ORTHO05D005340 9.4e-77 290.8 234 65.8
Actinidia31956 Actinidia chinensis HOM05D004550 ORTHO05D005340 1.2e-76 290.4 236 66.5
Nn3g17356 Nelumbo nucifera HOM05D004550 ORTHO05D005340 1.2e-76 290.4 234 65.0
CSS0045485 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 2.1e-76 289.7 232 67.7
MBI19_g03106_MAGBIO Magnolia biondii HOM05D004550 ORTHO05D005340 2.1e-76 289.7 233 63.9
Migut.L01230 Erythranthe guttata HOM05D004550 ORTHO05D005340 2.7e-76 289.3 233 67.0
FAN17G0531 Fragaria x ananassa HOM05D004550 ORTHO05D005340 2.7e-76 289.3 232 67.7
FAN07G0354 Fragaria x ananassa HOM05D004550 ORTHO05D005340 3.6e-76 288.9 232 67.2
Thecc.02G338200 Theobroma cacao HOM05D004550 ORTHO05D005340 6.1e-76 288.1 232 65.9
Nn4g23307 Nelumbo nucifera HOM05D004550 ORTHO05D005340 8.0e-76 287.7 235 63.8
Gohir.A12G162200 Gossypium hirsutum HOM05D004550 ORTHO05D005340 3.0e-75 285.8 232 65.5
Potri.008G092300 Populus trichocarpa HOM05D004550 ORTHO05D005340 1.1e-74 283.9 235 66.0
Potri.010G162600 Populus trichocarpa HOM05D004550 ORTHO05D005340 1.1e-74 283.9 238 65.1
Prupe.1G281100 Prunus persica HOM05D004550 ORTHO05D005340 2.0e-74 283.1 231 65.4
Cc11_g12470 Coffea canephora HOM05D004550 ORTHO05D005340 2.6e-74 282.7 232 65.5
Hma1.2p1_0354F.1_g133690 Hydrangea macrophylla HOM05D004550 ORTHO05D005340 3.3e-74 282.3 236 67.4
CsaV3_5G025150 Cucumis sativus L. HOM05D004550 ORTHO05D005340 4.4e-74 282.0 231 66.2
PGSC0003DMG400028333 Solanum tuberosum HOM05D004550 ORTHO05D005340 7.4e-74 281.2 232 66.4
Solyc05g012710.4 Solanum lycopersicum HOM05D004550 ORTHO05D005340 2.8e-73 279.3 232 65.5
Sopen05g007540 Solanum pennellii HOM05D004550 ORTHO05D005340 2.8e-73 279.3 232 65.5
COL.COLO4_27949 Corchorus olitorius HOM05D004550 ORTHO05D005340 4.8e-73 278.5 199 72.4
Nitab4.5_0000334g0090 Nicotiana tabacum HOM05D004550 ORTHO05D005340 4.8e-73 278.5 233 65.7
ClCG09G021950 Citrullus lanatus HOM05D004550 ORTHO05D005340 8.2e-73 277.7 231 64.9
Nitab4.5_0011843g0010 Nicotiana tabacum HOM05D004550 ORTHO05D005340 8.2e-73 277.7 233 65.2
GSVIVG01001334001 Vitis vinifera HOM05D004550 ORTHO05D005340 8.2e-73 277.7 230 64.3
PGR102G3210 Punica granatum HOM05D004550 ORTHO05D005340 1.4e-72 276.9 234 63.7
MSTRG.7770 Avicennia marina HOM05D004550 ORTHO05D005340 2.4e-72 276.2 233 64.8
Manes.05G107100 Manihot esculenta HOM05D004550 ORTHO05D005340 2.4e-72 276.2 235 62.1
CAN.G1200.3 Capsicum annuum HOM05D004550 ORTHO05D005340 5.3e-72 275.0 232 64.2
Sp5g24440 Schrenkiella parvula HOM05D004550 ORTHO05D005340 1.6e-71 273.5 231 64.9
FAN12G3802 Fragaria x ananassa HOM05D004550 ORTHO05D005340 4.5e-71 271.9 223 66.4
Thhalv10019103m.g Eutrema salsugineum HOM05D004550 ORTHO05D005340 5.9e-71 271.6 231 63.6
Peaxi162Scf00364g00223 Petunia axillaris HOM05D004550 ORTHO05D005340 1.0e-70 270.8 232 63.4
Sed0017620 Sechium edule HOM05D004550 ORTHO05D005340 1.0e-70 270.8 231 64.1
DCAR_030983 Daucus carota HOM05D004550 ORTHO05D005340 2.2e-70 269.6 232 65.9
MELO3C002974.2 Cucumis melo HOM05D004550 ORTHO05D005340 5.0e-70 268.5 261 59.0
Ah.02g129300 Amaranthus hybridus HOM05D004550 ORTHO05D005340 8.5e-70 267.7 248 58.9
CARHR062270 Cardamine hirsuta HOM05D004550 ORTHO05D005340 8.5e-70 267.7 229 64.6
Haze_11945 Corylus avellana HOM05D004550 ORTHO05D005340 8.5e-70 267.7 182 73.1
Sabra08G0069100 Salix brachista HOM05D004550 ORTHO05D005340 8.5e-70 267.7 281 54.1
Cpa.g.sc1.80 Carica papaya HOM05D004550 ORTHO05D005340 1.5e-69 266.9 197 69.5
FAN22G1576 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.9e-69 266.5 230 63.0
Aqoxy3G03523 Aquilegia oxysepala HOM05D004550 ORTHO05D005340 3.2e-69 265.8 235 62.1
TAR371G1135 Trochodendron aralioides HOM05D004550 ORTHO05D005340 5.5e-69 265.0 206 67.0
Sc04g0007790 Simmondsia chinensis HOM05D004550 ORTHO05D005340 7.2e-69 264.6 235 59.6
Actinidia19927 Actinidia chinensis HOM05D004550 ORTHO05D005340 2.7e-68 262.7 200 68.0
vmacro01339 Vaccinium macrocarpon HOM05D004550 ORTHO05D005340 2.7e-68 262.7 197 66.5
AT1G69390 Arabidopsis thaliana HOM05D004550 ORTHO05D005340 3.6e-68 262.3 231 63.6
CANSAT64G2188 Cannabis sativa HOM05D004550 ORTHO05D005340 4.7e-68 261.9 236 58.9
AL2G28500 Arabidopsis lyrata HOM05D004550 ORTHO05D005340 6.1e-68 261.5 231 64.5
BolC2t08705H Brassica oleracea HOM05D004550 ORTHO05D005340 1.4e-67 260.4 232 63.4
SGA_v2.0_scaffold16G07747 Striga asiatica HOM05D004550 ORTHO05D005340 2.3e-67 259.6 237 61.2
Carub.0002s1599 Capsella rubella HOM05D004550 ORTHO05D005340 4.0e-67 258.8 228 62.3
PSO063G6186 Papaver somniferum HOM05D004550 ORTHO05D005340 4.0e-67 258.8 231 61.0
THA.LOC104822027 Tarenaya hassleriana HOM05D004550 ORTHO05D005340 4.0e-67 258.8 232 62.5
PSO063G5570 Papaver somniferum HOM05D004550 ORTHO05D005340 5.2e-67 258.5 231 60.6
C02p26330 Brassica napus HOM05D004550 ORTHO05D005340 6.8e-67 258.1 232 62.9
SGA_v2.0_scaffold36G14423 Striga asiatica HOM05D004550 ORTHO05D005340 1.5e-66 256.9 233 60.5
Sabra10G0123800 Salix brachista HOM05D001252 ORTHO05D005340 2.0e-66 256.5 203 66.0
BolC6t39378H Brassica oleracea HOM05D004550 ORTHO05D005340 4.4e-66 255.4 231 61.5
BcaB05g24446 Brassica carinata HOM05D004550 ORTHO05D005340 9.7e-66 254.2 232 62.9
DCAR_007179 Daucus carota HOM05D004550 ORTHO05D005340 9.7e-66 254.2 234 59.8
C06p40530 Brassica napus HOM05D004550 ORTHO05D005340 1.7e-65 253.4 233 61.8
Hund05856 Selenicereus undatus HOM05D004550 ORTHO05D005340 4.8e-65 251.9 234 59.0
BraA07t31157Z Brassica rapa HOM05D004550 ORTHO05D005340 6.3e-65 251.5 236 60.6
Manes.05G087100 Manihot esculenta HOM05D004550 ORTHO05D005340 6.3e-65 251.5 172 70.9
A07p35690 Brassica napus HOM05D004550 ORTHO05D005340 8.3e-65 251.1 236 60.6
GSVIVG01011473001 Vitis vinifera HOM05D004550 ORTHO05D005340 8.3e-65 251.1 236 58.5
Ah.03g134600 Amaranthus hybridus HOM05D004550 ORTHO05D005340 1.1e-64 250.8 233 58.4
HanXRQChr12g0362721 Helianthus annuus HOM05D004550 ORTHO05D005340 1.4e-64 250.4 233 60.5
BcaB03g15897 Brassica carinata HOM05D004550 ORTHO05D005340 2.4e-64 249.6 232 59.9
Aa31LG4G11470 Aethionema arabicum HOM05D004550 ORTHO05D005340 4.1e-64 248.8 223 63.7
HanXRQChr08g0210541 Helianthus annuus HOM05D004550 ORTHO05D005340 5.3e-64 248.4 232 59.9
HanXRQChr08g0211031 Helianthus annuus HOM05D004550 ORTHO05D005340 5.3e-64 248.4 232 59.9
Lsat_1_v5_gn_8_46800 Lactuca sativa HOM05D004550 ORTHO05D005340 1.6e-63 246.9 232 59.5
EL10Ac6g13282 Beta vulgaris HOM05D004550 ORTHO05D005340 7.7e-63 244.6 264 52.3
Oeu021093.1 Olea europaea HOM05D004550 ORTHO05D005340 1.0e-62 244.2 168 73.2
ECA233G5814 Erigeron canadensis HOM05D004550 ORTHO05D005340 2.9e-62 242.7 210 61.9
unitig_21.g20859 Utricularia gibba HOM05D004550 ORTHO05D005340 1.1e-61 240.7 240 56.7
RcHm_v2.0_Chr2g0166971 Rosa chinensis HOM05D004550 ORTHO05D005340 3.2e-61 239.2 237 56.5
A02p15870 Brassica napus HOM05D004550 ORTHO05D005340 1.6e-60 236.9 172 72.1
FvH4_6g47773 Fragaria vesca HOM05D004550 ORTHO05D005340 1.6e-60 236.9 233 56.7
TAR374G1091 Trochodendron aralioides HOM05D004550 ORTHO05D005340 3.6e-60 235.7 183 64.5
BcaC03g15080 Brassica carinata HOM05D004550 ORTHO05D005340 1.2e-58 230.7 179 69.3
ATR0730G201 Amborella trichopoda HOM05D004550 ORTHO05D005340 2.6e-58 229.6 180 67.2
FAN05G1708 Fragaria x ananassa HOM05D004550 ORTHO05D005340 3.4e-58 229.2 227 57.3
FAN14G0263 Fragaria x ananassa HOM05D004550 ORTHO05D005340 5.7e-58 228.4 149 75.2
Gohir.D02G127801 Gossypium hirsutum HOM05D004550 ORTHO05D005340 2.2e-57 226.5 232 54.7
Gorai.005G143600 Gossypium raimondii HOM05D004550 ORTHO05D005340 2.2e-57 226.5 232 54.7
HPP92_018458 Vanilla planifolia HOM05D004550 ORTHO05D005340 3.1e-56 222.6 152 71.7
CDE04G2021 Ceratophyllum demersum HOM05D004550 ORTHO05D005340 2.7e-55 219.5 251 50.6
PSO478G0019 Papaver somniferum HOM05D004550 ORTHO05D005340 3.5e-55 219.2 211 58.3
Prupe.3G261900 Prunus persica HOM05D004550 ORTHO05D005340 1.1e-53 214.2 226 55.8
AUR62005866 Chenopodium quinoa HOM05D004550 ORTHO05D005340 7.2e-53 211.5 232 50.9
HanXRQChr17g0545411 Helianthus annuus HOM05D004550 ORTHO05D005340 2.3e-51 206.5 232 52.6
MSTRG.729 Avicennia marina HOM05D004550 ORTHO05D005340 6.8e-51 204.9 134 78.4
Os12g0498400 Oryza sativa ssp. japonica HOM05D004550 ORTHO05D005340 8.9e-51 204.5 212 54.2
AUR62032858 Chenopodium quinoa HOM05D004550 ORTHO05D005340 1.7e-49 200.3 232 49.1
MD09G1057200 Malus domestica HOM05D004550 ORTHO05D005340 1.8e-48 196.8 218 53.2
MELO3C012132.2 Cucumis melo HOM05D004550 ORTHO05D005340 1.6e-47 193.7 231 49.8
Potri.004G121000 Populus trichocarpa HOM05D004550 ORTHO05D005340 2.9e-46 189.5 142 69.0
SEGI_17925 Sequoiadendron giganteum HOM05D004550 ORTHO05D005340 3.9e-46 189.1 150 66.0
CsaV3_5G033110 Cucumis sativus L. HOM05D004550 ORTHO05D005340 5.0e-46 188.7 231 48.9
Sabra04G0067200 Salix brachista HOM05D004550 ORTHO05D005340 8.6e-46 188.0 139 67.6
Sed0010995 Sechium edule HOM05D004550 ORTHO05D005340 4.0e-43 179.1 233 46.8
Zm00001eb409620 Zea mays HOM05D004550 ORTHO05D005340 5.8e-42 175.3 127 68.5
ClCG05G023910 Citrullus lanatus HOM05D004550 ORTHO05D005340 2.9e-41 172.9 147 61.9
MD16G1066100 Malus domestica HOM05D004550 ORTHO05D005340 8.3e-41 171.4 99 85.9
Thecc.02G337600 Theobroma cacao HOM05D004550 ORTHO05D005340 1.2e-36 157.5 110 70.9
Pp3c23_20800 Physcomitrium patens HOM05D004550 ORTHO05D005340 5.2e-35 152.1 141 58.9
Mapoly0021s0017 Marchantia polymorpha HOM05D004550 ORTHO05D005340 8.9e-35 151.4 138 61.6
Pp3c20_5010 Physcomitrium patens HOM05D004550 ORTHO05D005340 7.5e-34 148.3 132 61.4
Actinidia33237 Actinidia chinensis HOM05D004550 ORTHO05D005340 9.8e-34 147.9 154 56.5
AagrBONN_evm.TU.Sc2ySwM_344.2821 Anthoceros agrestis HOM05D004550 ORTHO05D005340 1.9e-32 143.7 166 50.0
SMO141G0150 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 1.3e-30 137.5 98 67.3
SMO356G0701 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 3.9e-30 136.0 121 60.3
Pp3c9_20530 Physcomitrium patens HOM05D004550 ORTHO05D005340 6.6e-30 135.2 140 50.7
arahy.Tifrunner.gnm1.ann1.QAIU0T Arachis hypogaea HOM05D004550 ORTHO05D005340 1.6e-28 130.6 76 84.2
BcaC08g45895 Brassica carinata HOM05D004550 ORTHO05D005340 7.8e-23 111.7 71 80.3
BcaB03g15467 Brassica carinata HOM05D004550 ORTHO05D005340 6.2e-20 102.1 64 81.2
C06p37000 Brassica napus HOM05D004550 ORTHO05D005340 1.4e-19 100.9 95 61.1
BolC6t38810H Brassica oleracea HOM05D004550 ORTHO05D005340 1.4e-19 100.9 95 61.1
Potri.017G088401 Populus trichocarpa HOM05D004550 ORTHO05D005340 4.9e-17 92.4 68 66.2
Cre17.g720350 Chlamydomonas reinhardtii HOM05D004550 ORTHO05D005340 1.7e-14 84.0 129 36.4
PRCOL_00005365 Prasinoderma coloniale HOM05D004550 ORTHO05D005340 4.3e-13 79.3 133 33.1
MCO05G609 Micromonas commoda HOM05D004550 ORTHO05D005340 5.3e-11 72.4 105 38.1
RcHm_v2.0_Chr5g0013451 Rosa chinensis HOM05D004550 ORTHO05D005340 1.3e-06 57.8 66 42.4


User provided reference genes

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