Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G090511 Phaseolus vulgaris HOM05D004570 ORTHO05D005494 1.2e-47 193.0 103 100.0
Gohir.A11G230402 Gossypium hirsutum HOM05D004570 ORTHO05D005494 2.3e-40 168.7 101 87.1
Gohir.A12G229466 Gossypium hirsutum HOM05D004570 ORTHO05D005494 8.9e-40 166.8 101 86.1
Gorai.010G129700 Gossypium raimondii HOM05D004570 ORTHO05D005494 8.9e-40 166.8 101 86.1
Glyma.15G238900 Glycine max HOM05D004570 ORTHO05D005494 4.4e-39 164.5 100 89.0
Gohir.A04G059000 Gossypium hirsutum HOM05D004570 ORTHO05D005494 3.7e-38 161.4 101 84.2
RcHm_v2.0_CPg0502011 Rosa chinensis HOM05D004570 ORTHO05D005494 4.9e-38 161.0 101 83.2
RcHm_v2.0_Chr6g0260411 Rosa chinensis HOM05D004570 ORTHO05D005494 1.4e-37 159.5 101 85.1
MELO3C001309.2 Cucumis melo HOM05D004570 ORTHO05D005494 1.9e-37 159.1 101 83.2
MELO3C028029.2 Cucumis melo HOM05D004570 ORTHO05D005494 1.9e-37 159.1 101 83.2
MELO3C028120.2 Cucumis melo HOM05D004570 ORTHO05D005494 1.9e-37 159.1 101 83.2
ATCG00650 Arabidopsis thaliana HOM05D004570 ORTHO05D005494 3.2e-37 158.3 101 82.2
CARHR282160 Cardamine hirsuta HOM05D004570 ORTHO05D005494 3.2e-37 158.3 101 82.2
Gohir.D12G107900 Gossypium hirsutum HOM05D004570 ORTHO05D005494 3.2e-37 158.3 101 82.2
HanXRQChr01g0004801 Helianthus annuus HOM05D004570 ORTHO05D005494 3.2e-37 158.3 101 82.2
HanXRQChr01g0020301 Helianthus annuus HOM05D004570 ORTHO05D005494 3.2e-37 158.3 101 82.2
HanXRQChr02g0041611 Helianthus annuus HOM05D004570 ORTHO05D005494 3.2e-37 158.3 101 82.2
HanXRQChr02g0044851 Helianthus annuus HOM05D004570 ORTHO05D005494 3.2e-37 158.3 101 82.2
HanXRQChr10g0283601 Helianthus annuus HOM05D004570 ORTHO05D005494 3.2e-37 158.3 101 82.2
HanXRQChr10g0284291 Helianthus annuus HOM05D004570 ORTHO05D005494 3.2e-37 158.3 101 82.2
HanXRQChr10g0289311 Helianthus annuus HOM05D004570 ORTHO05D005494 3.2e-37 158.3 101 82.2
HanXRQChr10g0318151 Helianthus annuus HOM05D004570 ORTHO05D005494 3.2e-37 158.3 101 82.2
HanXRQChr11g0326881 Helianthus annuus HOM05D004570 ORTHO05D005494 3.2e-37 158.3 101 82.2
HanXRQCPg0580091 Helianthus annuus HOM05D004570 ORTHO05D005494 3.2e-37 158.3 101 82.2
DCAR_032506 Daucus carota HOM05D004570 ORTHO05D005494 4.1e-37 157.9 101 82.2
HanXRQChr04g0095121 Helianthus annuus HOM05D004570 ORTHO05D005494 4.1e-37 157.9 101 81.2
Lalb_Chr07g0192071 Lupinus albus HOM05D004570 ORTHO05D005494 4.1e-37 157.9 99 84.8
PSO548G0082 Papaver somniferum HOM05D004570 ORTHO05D005494 4.1e-37 157.9 101 83.2
PGR111G0035 Punica granatum HOM05D004570 ORTHO05D005494 4.1e-37 157.9 101 82.2
AL2G21620 Arabidopsis lyrata HOM05D004570 ORTHO05D005494 5.4e-37 157.5 97 84.5
Glyma.12G232200 Glycine max HOM05D004570 ORTHO05D005494 5.4e-37 157.5 90 93.3
HanXRQChr04g0094281 Helianthus annuus HOM05D004570 ORTHO05D005494 9.2e-37 156.8 101 81.2
Sed0017454 Sechium edule HOM05D004570 ORTHO05D005494 1.6e-36 156.0 101 81.2
C06p22960 Brassica napus HOM05D004570 ORTHO05D005494 2.1e-36 155.6 101 81.2
BolSC29t60597H Brassica oleracea HOM05D004570 ORTHO05D005494 2.1e-36 155.6 101 81.2
BolSC35t60657H Brassica oleracea HOM05D004570 ORTHO05D005494 2.1e-36 155.6 101 81.2
BolSC46t61008H Brassica oleracea HOM05D004570 ORTHO05D005494 2.1e-36 155.6 101 81.2
BraA06t25415Z Brassica rapa HOM05D004570 ORTHO05D005494 2.1e-36 155.6 101 81.2
BraSC138t45566Z Brassica rapa HOM05D004570 ORTHO05D005494 2.1e-36 155.6 101 81.2
BraSC25t45856Z Brassica rapa HOM05D004570 ORTHO05D005494 2.1e-36 155.6 101 81.2
BraSC58t46431Z Brassica rapa HOM05D004570 ORTHO05D005494 2.1e-36 155.6 101 81.2
BolSC47t61087H Brassica oleracea HOM05D004570 ORTHO05D005494 2.7e-36 155.2 102 80.4
Nn021s41531 Nelumbo nucifera HOM05D004570 ORTHO05D005494 2.7e-36 155.2 101 81.2
Nn3g19985 Nelumbo nucifera HOM05D004570 ORTHO05D005494 2.7e-36 155.2 101 81.2
C02p28720 Brassica napus HOM05D004570 ORTHO05D005494 6.0e-36 154.1 101 80.2
C06p23030 Brassica napus HOM05D004570 ORTHO05D005494 6.0e-36 154.1 101 80.2
BolC2t08922H Brassica oleracea HOM05D004570 ORTHO05D005494 6.0e-36 154.1 101 80.2
CAN.G1148.10 Capsicum annuum HOM05D004570 ORTHO05D005494 6.0e-36 154.1 101 79.2
CAN.G1314.4 Capsicum annuum HOM05D004570 ORTHO05D005494 6.0e-36 154.1 101 79.2
CAN.G2018.14 Capsicum annuum HOM05D004570 ORTHO05D005494 6.0e-36 154.1 101 79.2
CAN.G2018.6 Capsicum annuum HOM05D004570 ORTHO05D005494 6.0e-36 154.1 101 79.2
CAN.G3365.4 Capsicum annuum HOM05D004570 ORTHO05D005494 6.0e-36 154.1 101 79.2
CAN.G438.84 Capsicum annuum HOM05D004570 ORTHO05D005494 6.0e-36 154.1 101 79.2
Lj1g0020553 Lotus japonicus HOM05D004570 ORTHO05D005494 6.0e-36 154.1 96 87.5
LjContig00318g0015790 Lotus japonicus HOM05D004570 ORTHO05D005494 6.0e-36 154.1 96 87.5
Solyc00g500022.1 Solanum lycopersicum HOM05D004570 ORTHO05D005494 6.0e-36 154.1 101 79.2
Sopen07g012410 Solanum pennellii HOM05D004570 ORTHO05D005494 6.0e-36 154.1 101 79.2
PGSC0003DMG400044817 Solanum tuberosum HOM05D004570 ORTHO05D005494 6.0e-36 154.1 101 79.2
PGSC0003DMG400045454 Solanum tuberosum HOM05D004570 ORTHO05D005494 6.0e-36 154.1 101 79.2
PGSC0003DMG401022617 Solanum tuberosum HOM05D004570 ORTHO05D005494 6.0e-36 154.1 101 79.2
TAR628G1502 Trochodendron aralioides HOM05D004570 ORTHO05D005494 2.3e-35 152.1 100 81.0
Ciclev10003202m.g Citrus clementina HOM05D004570 ORTHO05D005494 3.0e-35 151.8 101 79.2
Gorai.001G196600 Gossypium raimondii HOM05D004570 ORTHO05D005494 3.9e-35 151.4 101 79.2
CAN.G561.9 Capsicum annuum HOM05D004570 ORTHO05D005494 8.6e-35 150.2 101 76.2
Gohir.A09G109900 Gossypium hirsutum HOM05D004570 ORTHO05D005494 7.3e-34 147.1 101 77.2
BolC6t36198H Brassica oleracea HOM05D004570 ORTHO05D005494 1.4e-32 142.9 101 76.2
Gohir.D06G113675 Gossypium hirsutum HOM05D004570 ORTHO05D005494 2.3e-32 142.1 82 90.2
BolSC49t61173H Brassica oleracea HOM05D004570 ORTHO05D005494 2.0e-31 139.0 101 74.3
CAN.G1753.2 Capsicum annuum HOM05D004570 ORTHO05D005494 7.5e-31 137.1 101 70.3
Lalb_Chr23g0274341 Lupinus albus HOM05D004570 ORTHO05D005494 1.7e-30 136.0 86 83.7
arahy.Tifrunner.gnm1.ann1.0J98KG Arachis hypogaea HOM05D004570 ORTHO05D005494 3.7e-30 134.8 89 83.1
arahy.Tifrunner.gnm1.ann1.JZHZ2W Arachis hypogaea HOM05D004570 ORTHO05D005494 3.7e-30 134.8 89 83.1
Gohir.A01G178208 Gossypium hirsutum HOM05D004570 ORTHO05D005494 3.9e-27 124.8 88 76.1
Medtr4g051350 Medicago truncatula HOM05D004570 ORTHO05D009532 1.5e-26 122.9 117 64.1
Gohir.A01G178244 Gossypium hirsutum HOM05D004570 ORTHO05D005494 4.3e-26 121.3 88 75.0
Gohir.A04G042801 Gossypium hirsutum HOM05D004570 ORTHO05D005494 1.1e-24 116.7 93 67.7
Gorai.006G063400 Gossypium raimondii HOM05D004570 ORTHO05D005494 6.8e-24 114.0 68 86.8
Hund04053 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.9e-24 113.6 83 74.7
Hund07983 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.9e-24 113.6 83 74.7
Hund08573 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.9e-24 113.6 83 74.7
Hund08807 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.9e-24 113.6 83 74.7
Hund20237 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.9e-24 113.6 83 74.7
Hund22775 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.9e-24 113.6 83 74.7
Hund27463 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.9e-24 113.6 83 74.7
Hund27482 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.9e-24 113.6 83 74.7
Hund27573 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.9e-24 113.6 83 74.7
Hund27596 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.9e-24 113.6 83 74.7
Hund27877 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.9e-24 113.6 83 74.7
Hund27896 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.9e-24 113.6 83 74.7
Hund27980 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.9e-24 113.6 83 74.7
Hund28050 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.9e-24 113.6 83 74.7
Hund28104 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.9e-24 113.6 83 74.7
Hund28263 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.9e-24 113.6 83 74.7
Hund28454 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.9e-24 113.6 83 74.7
Hund28470 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.9e-24 113.6 83 74.7
Hund28489 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.9e-24 113.6 83 74.7
Hund28514 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.9e-24 113.6 83 74.7
Hund28525 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.9e-24 113.6 83 74.7
Hund28627 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.9e-24 113.6 83 74.7
Hund28673 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.9e-24 113.6 83 74.7
Hund28719 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.9e-24 113.6 83 74.7
Hund28741 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.9e-24 113.6 83 74.7
Hund28753 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.9e-24 113.6 83 74.7
Hund28842 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.9e-24 113.6 83 74.7
Hund28891 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.9e-24 113.6 83 74.7
Hund29139 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.9e-24 113.6 83 74.7
Hund29177 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.9e-24 113.6 83 74.7
Hund29360 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.9e-24 113.6 83 74.7
Hund29465 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.9e-24 113.6 83 74.7
Hund29622 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.9e-24 113.6 83 74.7
Hund29704 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.9e-24 113.6 83 74.7
Hund29708 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.9e-24 113.6 83 74.7
Hund29718 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.9e-24 113.6 83 74.7
Hund29725 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.9e-24 113.6 83 74.7
Hund29808 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.9e-24 113.6 83 74.7
Hund29832 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.9e-24 113.6 83 74.7
Hund29833 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.9e-24 113.6 83 74.7
Hund29856 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.9e-24 113.6 83 74.7
Hund29864 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.9e-24 113.6 83 74.7
Hund29940 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.9e-24 113.6 83 74.7
Hund30026 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.9e-24 113.6 83 74.7
Hund30252 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.9e-24 113.6 83 74.7
Hund30318 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.9e-24 113.6 83 74.7
Hund30479 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.9e-24 113.6 83 74.7
Hund30523 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.9e-24 113.6 83 74.7
Hund30577 Selenicereus undatus HOM05D004570 ORTHO05D005494 8.9e-24 113.6 83 74.7
Eucgr.A00291 Eucalyptus grandis HOM05D004570 ORTHO05D005494 2.2e-22 109.0 62 88.7
Gohir.D01G101982 Gossypium hirsutum HOM05D004570 ORTHO05D005494 2.9e-22 108.6 69 84.1
Hund15803 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.9e-22 108.6 84 71.4
Lj2P1239T137 Lonicera japonica HOM05D004570 ORTHO05D005494 3.8e-22 108.2 83 71.1
Lj2P1237T61 Lonicera japonica HOM05D004570 ORTHO05D005494 1.1e-21 106.7 82 70.7
BNapus_Darmor_BZH_scaffold_287p00190 Brassica napus HOM05D004570 ORTHO05D005494 2.7e-20 102.1 69 78.3
C02p43580 Brassica napus HOM05D004570 ORTHO05D005494 2.7e-20 102.1 69 78.3
BolSC29t60476H Brassica oleracea HOM05D004570 ORTHO05D005494 2.7e-20 102.1 69 78.3
HanXRQChr00c0314g0573531 Helianthus annuus HOM05D004570 ORTHO05D005494 2.7e-20 102.1 69 79.7
HanXRQChr02g0052581 Helianthus annuus HOM05D004570 ORTHO05D005494 2.7e-20 102.1 69 79.7
HanXRQChr11g0345201 Helianthus annuus HOM05D004570 ORTHO05D005494 2.7e-20 102.1 59 86.4
Os01g0523401 Oryza sativa ssp. japonica HOM05D004570 ORTHO05D005494 6.0e-20 100.9 88 69.3
EL10Ac7g17378 Beta vulgaris HOM05D004570 ORTHO05D005494 1.3e-19 99.8 60 85.0
Gorai.001G063400 Gossypium raimondii HOM05D004570 ORTHO05D005494 2.3e-19 99.0 69 76.8
Eucgr.E01044 Eucalyptus grandis HOM05D004570 ORTHO05D005494 6.6e-19 97.4 69 79.7
Zm00001eb435160 Zea mays HOM05D004570 ORTHO05D005494 6.6e-19 97.4 89 65.2
Zm00001eb437170 Zea mays HOM05D004570 ORTHO05D005494 6.6e-19 97.4 89 65.2
Solyc01g017085.1 Solanum lycopersicum HOM05D004570 ORTHO05D005494 1.9e-18 95.9 76 63.2
Lalb_Chr18g0049721 Lupinus albus HOM05D004570 ORTHO05D005494 3.3e-18 95.1 55 90.9
arahy.Tifrunner.gnm1.ann1.S91IH0 Arachis hypogaea HOM05D004570 ORTHO05D005494 2.1e-17 92.4 55 83.6
CSS0008162 Camellia sinensis var. sinensis HOM05D004570 ORTHO05D005494 1.1e-16 90.1 53 90.6
CsaV3_7G024620 Cucumis sativus L. HOM05D004570 ORTHO05D005494 1.1e-16 90.1 56 80.4
Gorai.013G170400 Gossypium raimondii HOM05D004570 ORTHO05D005494 1.1e-16 90.1 59 78.0
Lalb_Chr20g0115501 Lupinus albus HOM05D004570 ORTHO05D005494 4.0e-16 88.2 59 79.7
Lalb_Chr23g0274801 Lupinus albus HOM05D004570 ORTHO05D005494 1.2e-15 86.7 56 82.1
BraSC103t45456Z Brassica rapa HOM05D004570 ORTHO05D005494 2.0e-15 85.9 96 61.5
GSVIVG01023557001 Vitis vinifera HOM05D000092 ORTHO05D000042 7.6e-15 84.0 59 79.7
BolC9t53164H Brassica oleracea HOM05D004570 ORTHO05D005494 2.1e-12 75.9 51 74.5
arahy.Tifrunner.gnm1.ann1.RCVY9V Arachis hypogaea HOM05D000540 ORTHO05D000681 5.1e-11 71.2 40 95.0
BolC8t52433H Brassica oleracea HOM05D004570 ORTHO05D005494 6.6e-11 70.9 41 85.4
BraSC58t46492Z Brassica rapa HOM05D004570 ORTHO05D005494 6.6e-11 70.9 45 77.8
arahy.Tifrunner.gnm1.ann1.IY5TEH Arachis hypogaea HOM05D011450 ORTHO05D011017 3.1e-08 62.0 46 69.6
BolC4t25866H Brassica oleracea HOM05D004570 ORTHO05D005494 5.3e-08 61.2 36 83.3
SMO086G0030 Selaginella moellendorffii HOM05D004570 ORTHO05D005494 2.0e-07 59.3 73 47.9


User provided reference genes

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