Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G088000 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 8.6e-97 357.1 191 100.0
VMungo1215G0414 Vigna mungo HOM05D005097 ORTHO05D006186 2.4e-70 269.2 193 80.8
Glyma.01G045200 Glycine max HOM05D005097 ORTHO05D006186 9.3e-59 230.7 190 70.5
Ca_04768_v3 Cicer arietinum L. HOM05D005097 ORTHO05D006186 1.6e-47 193.4 196 58.2
Lj2g0000799 Lotus japonicus HOM05D005097 ORTHO05D006186 1.0e-41 174.1 197 57.9
Psat2g121760 Pisum sativum HOM05D005097 ORTHO05D006186 1.1e-40 170.6 204 57.4
Phvul.003G067200 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 2.7e-34 149.4 190 51.6
VMungo0251G1975 Vigna mungo HOM05D005097 ORTHO05D006186 1.4e-33 147.1 193 52.3
Glyma.18G121900 Glycine max HOM05D005097 ORTHO05D006186 3.9e-33 145.6 202 52.5
QL03p064734 Quercus lobata HOM05D005097 ORTHO05D006186 9.7e-32 141.0 180 55.0
Glyma.08G299000 Glycine max HOM05D005097 ORTHO05D006186 3.1e-30 136.0 190 52.1
Gohir.A13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 2.0e-29 133.3 207 46.4
Gohir.A03G099800 Gossypium hirsutum HOM05D005097 ORTHO05D006186 1.3e-28 130.6 196 45.4
Duzib251G0564 Durio zibethinus HOM05D005097 ORTHO05D006186 1.7e-28 130.2 201 46.8
Gohir.D13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 1.7e-28 130.2 201 44.8
Gorai.013G084000 Gossypium raimondii HOM05D005097 ORTHO05D006186 1.7e-28 130.2 201 44.8
Cpa.g.c36484 Carica papaya HOM05D005097 ORTHO05D006186 1.1e-27 127.5 192 53.1
CiPaw.06G083100 Carya illinoinensis HOM05D005097 ORTHO05D006186 2.5e-27 126.3 184 53.3
Manes.05G099600 Manihot esculenta HOM05D005097 ORTHO05D006186 2.5e-27 126.3 191 52.4
Gorai.005G140300 Gossypium raimondii HOM05D005097 ORTHO05D006186 5.5e-27 125.2 198 42.9
Cfa009001 Carpinus fangiana HOM05D005097 ORTHO05D006186 7.2e-27 124.8 178 52.8
Haze_12031 Corylus avellana HOM05D005097 ORTHO05D006186 2.7e-26 122.9 181 52.5
Gohir.D02G124700 Gossypium hirsutum HOM05D005097 ORTHO05D006186 3.6e-26 122.5 198 42.4
COL.COLO4_22981 Corchorus olitorius HOM05D005097 ORTHO05D006186 4.7e-26 122.1 195 44.1
Atru.chr11.1825 Acer truncatum HOM05D005097 ORTHO05D006186 7.9e-26 121.3 187 45.5
CiPaw.05G137400 Carya illinoinensis HOM05D005097 ORTHO05D006186 7.9e-26 121.3 181 52.5
TAR622G0694 Trochodendron aralioides HOM05D005097 ORTHO05D006186 1.8e-25 120.2 170 46.5
TAR629G2181 Trochodendron aralioides HOM05D005097 ORTHO05D006186 5.2e-25 118.6 183 45.4
Dinv34170 Davidia involucrata HOM05D005097 ORTHO05D006186 1.5e-24 117.1 182 43.4
Manes.01G187400 Manihot esculenta HOM05D005097 ORTHO05D006186 1.5e-24 117.1 193 49.7
FAN12G0365 Fragaria x ananassa HOM05D005097 ORTHO05D006186 2.6e-24 116.3 185 52.4
Thecc.02G349700 Theobroma cacao HOM05D005097 ORTHO05D006186 2.2e-23 113.2 202 48.5
FAN22G0952 Fragaria x ananassa HOM05D005097 ORTHO05D006186 2.8e-23 112.8 189 51.3
FAN17G3076 Fragaria x ananassa HOM05D005097 ORTHO05D006186 1.4e-22 110.5 191 46.1
RcHm_v2.0_Chr4g0440081 Rosa chinensis HOM05D005097 ORTHO05D006186 2.4e-22 109.8 198 46.0
FAN07G0101 Fragaria x ananassa HOM05D005097 ORTHO05D006186 4.1e-22 109.0 187 44.9
Hma1.2p1_0265F.1_g106660 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 1.2e-21 107.5 188 44.7
CiPaw.05G214900 Carya illinoinensis HOM05D005097 ORTHO05D006186 1.6e-21 107.1 148 57.4
Prupe.1G272000 Prunus persica HOM05D005097 ORTHO05D006186 4.5e-21 105.5 193 40.9
Hma1.2p1_0598F.1_g186730 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 5.9e-21 105.1 190 42.1
Cc11_g13240 Coffea canephora HOM05D005097 ORTHO05D006186 2.9e-20 102.8 187 38.0
Ciclev10032896m.g Citrus clementina HOM05D005097 ORTHO05D006186 5.0e-20 102.1 197 46.2
CSS0049826 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 5.5e-19 98.6 178 37.6
MSTRG.689 Avicennia marina HOM05D005097 ORTHO05D006186 1.2e-18 97.4 196 40.8
MD16G1075200 Malus domestica HOM05D005097 ORTHO05D006186 1.2e-18 97.4 165 45.5
MSTRG.13412 Avicennia marina HOM05D005097 ORTHO05D006186 1.6e-18 97.1 185 38.4
TAR371G0839 Trochodendron aralioides HOM05D005097 ORTHO05D006186 2.1e-18 96.7 188 38.8
MBI05_g00383_MAGBIO Magnolia biondii HOM05D005097 ORTHO05D006186 6.1e-18 95.1 176 46.0
Nn4g23108 Nelumbo nucifera HOM05D005097 ORTHO05D006186 6.1e-18 95.1 180 37.2
MSTRG.7812 Avicennia marina HOM05D005097 ORTHO05D006186 6.7e-17 91.7 193 37.3
Aa31LG7G8220 Aethionema arabicum HOM05D005097 ORTHO05D006186 1.2e-16 90.9 160 39.4
Migut.E00105 Erythranthe guttata HOM05D005097 ORTHO05D006186 1.2e-16 90.9 188 37.8
A07p36180 Brassica napus HOM05D005097 ORTHO05D006186 1.5e-16 90.5 193 39.4
BraA07t31193Z Brassica rapa HOM05D005097 ORTHO05D006186 1.5e-16 90.5 193 39.4
CARHR025020 Cardamine hirsuta HOM05D005097 ORTHO05D006186 1.5e-16 90.5 184 36.4
BcaC08g46423 Brassica carinata HOM05D005097 ORTHO05D006186 2.6e-16 89.7 192 40.1
C06p43570 Brassica napus HOM05D005097 ORTHO05D006186 5.7e-16 88.6 191 38.7
Oeu054897.1 Olea europaea HOM05D005097 ORTHO05D006186 5.7e-16 88.6 184 44.6
BcaB03g14754 Brassica carinata HOM05D005097 ORTHO05D006186 7.5e-16 88.2 187 36.9
THA.LOC104822110 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 1.3e-15 87.4 149 45.6
CiPaw.13G150200 Carya illinoinensis HOM05D005097 ORTHO05D006186 2.8e-15 86.3 67 65.7
PSO063G6767 Papaver somniferum HOM05D005097 ORTHO05D006186 3.7e-15 85.9 164 45.1
Peaxi162Scf00541g00067 Petunia axillaris HOM05D005097 ORTHO05D006186 3.7e-15 85.9 193 36.8
Sopen05g003200 Solanum pennellii HOM05D005097 ORTHO05D006186 3.7e-15 85.9 202 38.1
DCAR_007146 Daucus carota HOM05D005097 ORTHO05D006186 4.8e-15 85.5 201 35.8
Rhsim12G0061600 Rhododendron simsii HOM05D005097 ORTHO05D006186 4.8e-15 85.5 185 37.8
Solyc05g007240.1 Solanum lycopersicum HOM05D005097 ORTHO05D006186 4.8e-15 85.5 205 38.5
SGA_v2.0_scaffold389G50580 Striga asiatica HOM05D005097 ORTHO05D006186 4.8e-15 85.5 171 38.0
Aqoxy3G03339 Aquilegia oxysepala HOM05D005097 ORTHO05D006186 6.3e-15 85.1 138 51.4
BolC6t39429H Brassica oleracea HOM05D005097 ORTHO05D006186 8.2e-15 84.7 193 40.4
BcaB05g24483 Brassica carinata HOM05D005097 ORTHO05D006186 1.4e-14 84.0 192 41.1
Lsat_1_v5_gn_3_52761 Lactuca sativa HOM05D005097 ORTHO05D006186 1.4e-14 84.0 192 36.5
Sed0019373 Sechium edule HOM05D005097 ORTHO05D006186 1.4e-14 84.0 183 35.0
PGR102G3149 Punica granatum HOM05D005097 ORTHO05D006186 2.4e-14 83.2 140 40.0
PGSC0003DMG400023051 Solanum tuberosum HOM05D005097 ORTHO05D006186 2.4e-14 83.2 200 36.5
ClCG05G024410 Citrullus lanatus HOM05D005097 ORTHO05D006186 3.1e-14 82.8 200 34.5
BcaC03g15115 Brassica carinata HOM05D005097 ORTHO05D006186 4.1e-14 82.4 191 38.7
A02p16130 Brassica napus HOM05D005097 ORTHO05D006186 4.1e-14 82.4 187 38.5
BolC2t08749H Brassica oleracea HOM05D005097 ORTHO05D006186 4.1e-14 82.4 191 38.7
BraA02t06672Z Brassica rapa HOM05D005097 ORTHO05D006186 4.1e-14 82.4 187 38.5
Oeu027980.1 Olea europaea HOM05D005097 ORTHO05D006186 4.1e-14 82.4 182 41.2
Dinv16629 Davidia involucrata HOM05D001598 ORTHO05D002757 5.3e-14 82.0 133 44.4
MD13G1074000 Malus domestica HOM05D005097 ORTHO05D006186 5.3e-14 82.0 154 40.9
Migut.L01312 Erythranthe guttata HOM05D005097 ORTHO05D006186 9.1e-14 81.3 188 37.8
Eucgr.G02516 Eucalyptus grandis HOM05D005097 ORTHO05D006186 1.2e-13 80.9 187 42.2
Sp5g24880 Schrenkiella parvula HOM05D005097 ORTHO05D006186 1.2e-13 80.9 203 39.4
Ah.03g135230 Amaranthus hybridus HOM05D005097 ORTHO05D006186 1.6e-13 80.5 194 44.3
PSO832G2020 Papaver somniferum HOM05D005097 ORTHO05D006186 1.6e-13 80.5 201 40.3
Sp1g21860 Schrenkiella parvula HOM05D005097 ORTHO05D006186 1.6e-13 80.5 187 34.2
Nitab4.5_0002151g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 2.0e-13 80.1 194 37.6
PGR119G1789 Punica granatum HOM05D005097 ORTHO05D006186 2.0e-13 80.1 71 60.6
SalBow2G0279 Salvia bowleyana HOM05D005097 ORTHO05D006186 2.0e-13 80.1 195 35.9
AL2G28940 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 2.7e-13 79.7 163 38.0
BcaB03g15503 Brassica carinata HOM05D005097 ORTHO05D006186 3.5e-13 79.3 188 33.5
Oeu045409.1 Olea europaea HOM05D005097 ORTHO05D006186 3.5e-13 79.3 165 44.8
MSTRG.2351 Avicennia marina HOM05D005097 ORTHO05D006186 5.9e-13 78.6 170 37.1
A07p31380 Brassica napus HOM05D005097 ORTHO05D006186 5.9e-13 78.6 190 35.8
A08p27630 Brassica napus HOM05D005097 ORTHO05D006186 5.9e-13 78.6 200 34.0
BraA07t30773Z Brassica rapa HOM05D005097 ORTHO05D006186 5.9e-13 78.6 190 35.8
BraA08t34700Z Brassica rapa HOM05D005097 ORTHO05D006186 5.9e-13 78.6 200 34.0
SalBow2G3468 Salvia bowleyana HOM05D005097 ORTHO05D006186 5.9e-13 78.6 195 35.9
THA.LOC104822921 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 5.9e-13 78.6 157 44.6
C06p36640 Brassica napus HOM05D005097 ORTHO05D006186 1.3e-12 77.4 190 34.2
Sc04g0008280 Simmondsia chinensis HOM05D005097 ORTHO05D006186 1.3e-12 77.4 191 37.2
Ah.02g131220 Amaranthus hybridus HOM05D005097 ORTHO05D006186 1.7e-12 77.0 177 39.5
BcaC08g45866 Brassica carinata HOM05D005097 ORTHO05D006186 1.7e-12 77.0 190 34.7
C02p26790 Brassica napus HOM05D005097 ORTHO05D006186 1.7e-12 77.0 187 38.5
BolC6t38773H Brassica oleracea HOM05D005097 ORTHO05D006186 1.7e-12 77.0 190 34.7
CARHR062830 Cardamine hirsuta HOM05D005097 ORTHO05D006186 2.9e-12 76.3 75 58.7
Aa31LG4G11040 Aethionema arabicum HOM05D005097 ORTHO05D006186 3.8e-12 75.9 149 37.6
Lsat_1_v5_gn_4_9981 Lactuca sativa HOM05D005097 ORTHO05D006186 3.8e-12 75.9 78 57.7
Nitab4.5_0007561g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 3.8e-12 75.9 195 37.4
Carub.0001s2406 Capsella rubella HOM05D005097 ORTHO05D006186 5.0e-12 75.5 190 38.9
Eucgr.G02514 Eucalyptus grandis HOM05D005097 ORTHO05D006186 5.0e-12 75.5 184 34.8
Oeu013625.1 Olea europaea HOM05D005097 ORTHO05D006186 6.5e-12 75.1 188 40.4
EL10Ac6g13179 Beta vulgaris HOM05D005097 ORTHO05D006186 8.5e-12 74.7 201 35.3
ECA234G2746 Erigeron canadensis HOM05D005097 ORTHO05D006186 8.5e-12 74.7 68 54.4
Eucgr.B03425 Eucalyptus grandis HOM05D005097 ORTHO05D006186 8.5e-12 74.7 185 42.7
BcaC07g39258 Brassica carinata HOM05D005097 ORTHO05D006186 1.1e-11 74.3 201 31.8
C08p22680 Brassica napus HOM05D005097 ORTHO05D006186 1.1e-11 74.3 201 31.8
BolC8t49906H Brassica oleracea HOM05D005097 ORTHO05D006186 1.1e-11 74.3 201 31.8
AL1G38630 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 1.5e-11 73.9 69 55.1
BcaB03g12015 Brassica carinata HOM05D005097 ORTHO05D006186 1.5e-11 73.9 151 37.1
MELO3C012082.2 Cucumis melo HOM05D005097 ORTHO05D006186 1.9e-11 73.6 190 33.7
Thhalv10008900m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 1.9e-11 73.6 189 31.7
AT1G26920 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 3.2e-11 72.8 143 37.1
AT1G69760 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 4.2e-11 72.4 77 53.2
Nn3g17188 Nelumbo nucifera HOM05D005097 ORTHO05D006186 5.5e-11 72.0 186 38.7
DCAR_027404 Daucus carota HOM05D005097 ORTHO05D006186 7.2e-11 71.6 69 53.6
ATR0564G527 Amborella trichopoda HOM05D005097 ORTHO05D006186 1.6e-10 70.5 176 30.1
Carub.0002s1644 Capsella rubella HOM05D005097 ORTHO05D006186 1.6e-10 70.5 83 53.0
Thhalv10019695m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 2.1e-10 70.1 74 51.4
BcaC05g26373 Brassica carinata HOM05D005097 ORTHO05D006186 3.6e-10 69.3 201 31.8
BolC5t31142H Brassica oleracea HOM05D005097 ORTHO05D006186 3.6e-10 69.3 201 31.8
A09p40330 Brassica napus HOM05D005097 ORTHO05D006186 4.7e-10 68.9 195 31.8
BraA09t39531Z Brassica rapa HOM05D005097 ORTHO05D006186 4.7e-10 68.9 195 31.8
CSS0023945 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 8.0e-10 68.2 68 57.4
Actinidia07840 Actinidia chinensis HOM05D005097 ORTHO05D006186 4.0e-09 65.9 68 48.5
HanXRQChr17g0545191 Helianthus annuus HOM05D005097 ORTHO05D006186 8.8e-09 64.7 69 55.1
AUR62028807 Chenopodium quinoa HOM05D005097 ORTHO05D006186 4.8e-07 58.9 75 48.0
SalBow8G4444 Salvia bowleyana HOM05D005097 ORTHO05D006186 1.1e-06 57.8 201 34.3


User provided reference genes

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