Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G086500 Phaseolus vulgaris HOM05D004366 ORTHO05D005058 1.7e-108 396.0 199 100.0
Ca_04775_v3 Cicer arietinum L. HOM05D004366 ORTHO05D005058 1.3e-95 353.2 199 87.4
Glyma.01G045700 Glycine max HOM05D004366 ORTHO05D005058 1.4e-94 349.7 199 87.9
Medtr5g039690 Medicago truncatula HOM05D004366 ORTHO05D005058 1.1e-91 340.1 198 84.8
Medtr8g463620 Medicago truncatula HOM05D004366 ORTHO05D005058 1.5e-91 339.7 198 84.3
Psat0s2341g0040 Pisum sativum HOM05D004366 ORTHO05D005058 2.5e-91 339.0 199 84.4
Glyma.02G106000 Glycine max HOM05D004366 ORTHO05D005058 3.3e-91 338.6 199 84.4
VMungo1215G0984 Vigna mungo HOM05D004366 ORTHO05D005058 1.8e-89 332.8 175 94.9
Lalb_Chr04g0256161 Lupinus albus HOM05D004366 ORTHO05D005058 1.3e-87 326.6 199 81.4
Lj2g0005379 Lotus japonicus HOM05D004366 ORTHO05D005058 6.4e-87 324.3 198 80.8
arahy.Tifrunner.gnm1.ann1.5V6A51 Arachis hypogaea HOM05D004366 ORTHO05D005058 1.5e-83 313.2 208 76.0
Atru.chr11.1817 Acer truncatum HOM05D004366 ORTHO05D005058 3.4e-80 302.0 198 76.3
Peaxi162Scf00026g03112 Petunia axillaris HOM05D004366 ORTHO05D005058 1.0e-79 300.4 198 75.8
ClCG05G024360 Citrullus lanatus HOM05D004366 ORTHO05D005058 1.3e-79 300.1 198 74.7
Nitab4.5_0000141g0240 Nicotiana tabacum HOM05D004366 ORTHO05D005058 1.3e-79 300.1 198 75.8
Sc11g0001840 Simmondsia chinensis HOM05D004366 ORTHO05D005058 1.3e-79 300.1 198 75.8
Lj3C1038T15 Lonicera japonica HOM05D004366 ORTHO05D005058 1.7e-79 299.7 198 75.3
Actinidia31203 Actinidia chinensis HOM05D004366 ORTHO05D005058 2.2e-79 299.3 198 76.3
Prupe.1G272700 Prunus persica HOM05D004366 ORTHO05D005058 2.2e-79 299.3 198 75.3
SalBow2G0488 Salvia bowleyana HOM05D004366 ORTHO05D005058 2.2e-79 299.3 198 72.7
COL.COLO4_22987 Corchorus olitorius HOM05D004366 ORTHO05D005058 3.8e-79 298.5 198 74.7
Cc11_g13140 Coffea canephora HOM05D004366 ORTHO05D005058 6.5e-79 297.7 198 74.7
TWI12G0004 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 6.5e-79 297.7 198 76.3
Eucgr.B03429 Eucalyptus grandis HOM05D004366 ORTHO05D005058 1.1e-78 297.0 198 74.2
MD13G1073400 Malus domestica HOM05D004366 ORTHO05D005058 1.1e-78 297.0 198 74.7
QL03p064520 Quercus lobata HOM05D004366 ORTHO05D005058 1.1e-78 297.0 198 74.2
MELO3C012087.2 Cucumis melo HOM05D004366 ORTHO05D005058 7.1e-78 294.3 198 73.2
Rhsim12G0062000 Rhododendron simsii HOM05D004366 ORTHO05D005058 7.1e-78 294.3 198 73.2
EL10Ac6g13190 Beta vulgaris HOM05D004366 ORTHO05D005058 9.3e-78 293.9 198 72.2
Ciclev10032771m.g Citrus clementina HOM05D004366 ORTHO05D005058 9.3e-78 293.9 198 74.2
Hund05888 Selenicereus undatus HOM05D004366 ORTHO05D005058 9.3e-78 293.9 199 72.9
CiPaw.06G083500 Carya illinoinensis HOM05D004366 ORTHO05D005058 1.6e-77 293.1 198 73.7
Manes.01G186800 Manihot esculenta HOM05D004366 ORTHO05D005058 2.1e-77 292.7 198 73.2
Aqoxy3G03355 Aquilegia oxysepala HOM05D004366 ORTHO05D005058 4.6e-77 291.6 191 75.4
CSS0003416 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 6.0e-77 291.2 198 73.7
CSS0021388 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 6.0e-77 291.2 198 73.7
Solyc01g010810.4 Solanum lycopersicum HOM05D004366 ORTHO05D005058 6.0e-77 291.2 198 72.2
CsaV3_5G032600 Cucumis sativus L. HOM05D004366 ORTHO05D005058 1.8e-76 289.7 198 72.7
Sopen01g006640 Solanum pennellii HOM05D004366 ORTHO05D005058 1.8e-76 289.7 198 71.7
Thecc.02G350500 Theobroma cacao HOM05D004366 ORTHO05D005058 2.3e-76 289.3 198 72.7
Cpa.g.sc128.8 Carica papaya HOM05D004366 ORTHO05D005058 3.0e-76 288.9 198 72.7
FAN12G0862 Fragaria x ananassa HOM05D004366 ORTHO05D005058 3.9e-76 288.5 198 71.7
AUR62026617 Chenopodium quinoa HOM05D004366 ORTHO05D005058 5.1e-76 288.1 191 75.4
Gohir.D13G074000 Gossypium hirsutum HOM05D004366 ORTHO05D005058 5.1e-76 288.1 198 70.7
Gorai.013G084600 Gossypium raimondii HOM05D004366 ORTHO05D005058 5.1e-76 288.1 198 70.7
MBI02_g23682_MAGBIO Magnolia biondii HOM05D004366 ORTHO05D005058 5.1e-76 288.1 198 72.7
MD16G1074700 Malus domestica HOM05D004366 ORTHO05D005058 5.1e-76 288.1 198 73.2
FAN15G0746 Fragaria x ananassa HOM05D004366 ORTHO05D005058 6.7e-76 287.7 198 72.7
FvH4_4g31510 Fragaria vesca HOM05D004366 ORTHO05D005058 8.7e-76 287.3 198 71.2
RcHm_v2.0_Chr4g0440001 Rosa chinensis HOM05D004366 ORTHO05D005058 8.7e-76 287.3 198 70.7
Sed0027317 Sechium edule HOM05D004366 ORTHO05D005058 1.9e-75 286.2 198 70.7
Gohir.A13G073900 Gossypium hirsutum HOM05D004366 ORTHO05D005058 2.5e-75 285.8 198 70.2
PGSC0003DMG400006558 Solanum tuberosum HOM05D004366 ORTHO05D005058 4.3e-75 285.0 198 71.2
CAN.G473.145 Capsicum annuum HOM05D004366 ORTHO05D005058 7.4e-75 284.3 198 71.7
FAN27G2895 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.3e-74 283.5 199 72.4
Oeu028302.2 Olea europaea HOM05D004366 ORTHO05D005058 1.6e-74 283.1 204 71.1
THA.LOC104822115 Tarenaya hassleriana HOM05D004366 ORTHO05D005058 1.6e-74 283.1 198 70.2
Migut.L01306 Erythranthe guttata HOM05D004366 ORTHO05D005058 2.1e-74 282.7 198 70.2
arahy.Tifrunner.gnm1.ann1.QXP3RB Arachis hypogaea HOM05D004366 ORTHO05D005058 2.8e-74 282.3 173 80.3
FAN24G0452 Fragaria x ananassa HOM05D004366 ORTHO05D005058 2.8e-74 282.3 198 70.2
ATR0564G205 Amborella trichopoda HOM05D004366 ORTHO05D005058 3.7e-74 282.0 198 70.7
FAN17G2550 Fragaria x ananassa HOM05D004366 ORTHO05D005058 4.8e-74 281.6 198 70.2
CSS0022805 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.1e-73 280.4 198 71.2
Haze_12025 Corylus avellana HOM05D004366 ORTHO05D005058 1.8e-73 279.6 198 72.2
AUR62005764 Chenopodium quinoa HOM05D004366 ORTHO05D005058 2.4e-73 279.3 180 76.7
CARHR062670 Cardamine hirsuta HOM05D004366 ORTHO05D005058 3.1e-73 278.9 198 69.2
AUR62034912 Chenopodium quinoa HOM05D004366 ORTHO05D005058 3.1e-73 278.9 179 76.5
PSO339G1196 Papaver somniferum HOM05D004366 ORTHO05D005058 3.1e-73 278.9 198 68.7
A07p31430 Brassica napus HOM05D004366 ORTHO05D005058 4.1e-73 278.5 195 70.3
BraA07t30778Z Brassica rapa HOM05D004366 ORTHO05D005058 4.1e-73 278.5 195 70.3
C06p36720 Brassica napus HOM05D004366 ORTHO05D005058 5.3e-73 278.1 195 69.7
Aa31LG4G11100 Aethionema arabicum HOM05D004366 ORTHO05D005058 6.9e-73 277.7 195 67.7
PSO384G0235 Papaver somniferum HOM05D004366 ORTHO05D005058 6.9e-73 277.7 198 69.2
BolC6t38782H Brassica oleracea HOM05D004366 ORTHO05D005058 9.0e-73 277.3 195 69.2
Nn4g23131 Nelumbo nucifera HOM05D004366 ORTHO05D005058 2.0e-72 276.2 188 75.5
Thhalv10019150m.g Eutrema salsugineum HOM05D004366 ORTHO05D005058 2.6e-72 275.8 191 70.7
Carub.0002s1634 Capsella rubella HOM05D004366 ORTHO05D005058 4.5e-72 275.0 198 69.2
A07p36060 Brassica napus HOM05D004366 ORTHO05D005058 5.9e-72 274.6 198 66.7
BraA07t31186Z Brassica rapa HOM05D004366 ORTHO05D005058 5.9e-72 274.6 198 66.7
FvH4_2g13310 Fragaria vesca HOM05D004366 ORTHO05D005058 5.9e-72 274.6 199 69.3
Sp5g24810 Schrenkiella parvula HOM05D004366 ORTHO05D005058 7.6e-72 274.2 198 68.2
AL2G28850 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 1.3e-71 273.5 198 67.7
Nitab4.5_0005950g0010 Nicotiana tabacum HOM05D004366 ORTHO05D005058 1.3e-71 273.5 198 70.2
AT1G69680 Arabidopsis thaliana HOM05D004366 ORTHO05D005058 2.9e-71 272.3 198 67.7
HanXRQChr08g0210471 Helianthus annuus HOM05D004366 ORTHO05D005058 3.8e-71 271.9 191 72.8
BcaC08g46415 Brassica carinata HOM05D004366 ORTHO05D005058 5.0e-71 271.6 198 66.2
BolC6t39421H Brassica oleracea HOM05D004366 ORTHO05D005058 5.0e-71 271.6 198 66.2
C06p43460 Brassica napus HOM05D004366 ORTHO05D005058 6.5e-71 271.2 198 66.2
SGA_v2.0_scaffold20G09275 Striga asiatica HOM05D004366 ORTHO05D005058 6.5e-71 271.2 198 67.7
HanXRQChr12g0362541 Helianthus annuus HOM05D004366 ORTHO05D005058 8.5e-71 270.8 191 71.2
Lsat_1_v5_gn_8_52741 Lactuca sativa HOM05D004366 ORTHO05D005058 1.4e-70 270.0 191 71.2
PSO675G4203 Papaver somniferum HOM05D004366 ORTHO05D005058 1.4e-70 270.0 198 67.2
TWI53G1314 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 1.4e-70 270.0 198 69.2
BcaB03g14744 Brassica carinata HOM05D004366 ORTHO05D005058 1.9e-70 269.6 198 65.7
Sabra13G0046200 Salix brachista HOM05D004366 ORTHO05D005058 1.9e-70 269.6 198 67.7
PGR102G1003 Punica granatum HOM05D004366 ORTHO05D005058 4.2e-70 268.5 198 68.7
unitig_22.g6909 Utricularia gibba HOM05D004366 ORTHO05D005058 5.5e-70 268.1 198 69.7
AUR62028793 Chenopodium quinoa HOM05D004366 ORTHO05D005058 9.3e-70 267.3 191 71.2
ECA233G4070 Erigeron canadensis HOM05D004366 ORTHO05D005058 4.6e-69 265.0 191 69.6
Sp3g28750 Schrenkiella parvula HOM05D004366 ORTHO05D005058 4.6e-69 265.0 201 65.2
BcaB03g15490 Brassica carinata HOM05D004366 ORTHO05D005058 6.1e-69 264.6 191 69.1
CANSAT25G1390 Cannabis sativa HOM05D004366 ORTHO05D005058 3.0e-68 262.3 198 66.2
CANSAT54G1616 Cannabis sativa HOM05D004366 ORTHO05D005058 3.0e-68 262.3 198 65.7
Zm00001eb080830 Zea mays HOM05D004366 ORTHO05D005058 6.7e-68 261.2 189 67.7
Os04g0459600 Oryza sativa ssp. japonica HOM05D004366 ORTHO05D005058 2.2e-66 256.1 189 66.1
AL7G43580 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 1.1e-65 253.8 184 68.5
SEGI_03925 Sequoiadendron giganteum HOM05D004366 ORTHO05D005058 1.1e-65 253.8 198 60.1
Aa31sc15G10 Aethionema arabicum HOM05D004366 ORTHO05D005058 9.1e-65 250.8 174 71.3
BcaC08g45875 Brassica carinata HOM05D004366 ORTHO05D005058 4.5e-64 248.4 198 64.1
Hma1.2p1_0598F.1_g186660 Hydrangea macrophylla HOM05D004366 ORTHO05D005058 1.0e-63 247.3 328 46.3
Potri.013G049900 Populus trichocarpa HOM05D004366 ORTHO05D005058 1.0e-63 247.3 179 69.8
HPP92_006020 Vanilla planifolia HOM05D004366 ORTHO05D005058 2.2e-63 246.1 185 63.8
TPR.G39101 Trifolium pratense HOM05D004366 ORTHO05D005058 1.1e-62 243.8 165 76.4
Oeu013622.3 Olea europaea HOM05D004366 ORTHO05D005058 1.4e-62 243.4 197 65.0
Ah.03g135200 Amaranthus hybridus HOM05D004366 ORTHO05D005058 4.6e-61 238.4 198 61.6
GSVIVG01020010001 Vitis vinifera HOM05D004366 ORTHO05D005058 1.5e-59 233.4 165 73.9
Duzib248G1524 Durio zibethinus HOM05D004366 ORTHO05D005058 3.3e-59 232.3 198 61.1
Aa31LG9G5650 Aethionema arabicum HOM05D004366 ORTHO05D005058 3.4e-56 222.2 210 55.7
vmacro01244 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 1.7e-55 219.9 248 51.2
Cfa008996 Carpinus fangiana HOM05D004366 ORTHO05D005058 9.4e-54 214.2 217 54.4
FAN22G2022 Fragaria x ananassa HOM05D004366 ORTHO05D005058 9.4e-54 214.2 233 53.6
SGA_v2.0_scaffold53G19387 Striga asiatica HOM05D004366 ORTHO05D005058 1.6e-53 213.4 235 52.3
Pp3c9_14930 Physcomitrium patens HOM05D004366 ORTHO05D005058 1.4e-52 210.3 188 54.3
AagrBONN_evm.TU.Sc2ySwM_344.5131 Anthoceros agrestis HOM05D004366 ORTHO05D005058 5.2e-52 208.4 189 53.4
DCAR_027406 Daucus carota HOM05D002775 ORTHO05D005058 3.2e-46 189.1 128 73.4
SMO147G0050 Selaginella moellendorffii HOM05D004366 ORTHO05D005058 3.2e-46 189.1 191 51.8
arahy.Tifrunner.gnm1.ann1.4LW61L Arachis hypogaea HOM05D004366 ORTHO05D005058 5.5e-46 188.3 115 80.9
vmacro01242 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 4.7e-45 185.3 223 49.3
CBR_g17957 Chara braunii HOM05D004366 ORTHO05D005058 1.5e-43 180.3 201 49.3
AagrBONN_evm.TU.Sc2ySwM_362.1786 Anthoceros agrestis HOM05D004366 ORTHO05D005058 2.2e-42 176.4 173 50.9
Dinv16634 Davidia involucrata HOM05D004366 ORTHO05D005058 5.9e-40 168.3 112 72.3
TAR629G2773 Trochodendron aralioides HOM05D004366 ORTHO05D005058 7.7e-40 167.9 112 69.6
SalBow2G3183 Salvia bowleyana HOM05D004366 ORTHO05D005058 1.7e-39 166.8 116 72.4
Pp3c15_14240 Physcomitrium patens HOM05D004366 ORTHO05D005058 6.5e-39 164.9 144 54.9
Mapoly0113s0045 Marchantia polymorpha HOM05D004366 ORTHO05D005058 1.3e-34 150.6 202 40.6
arahy.Tifrunner.gnm1.ann1.MY0RSE Arachis hypogaea HOM05D004366 ORTHO05D005058 2.4e-33 146.4 103 70.9
MD11G1061500 Malus domestica HOM05D004366 ORTHO05D005058 4.1e-33 145.6 112 64.3
Potri.019G023800 Populus trichocarpa HOM05D004366 ORTHO05D005058 2.7e-32 142.9 94 70.2
arahy.Tifrunner.gnm1.ann1.J913Y5 Arachis hypogaea HOM05D004366 ORTHO05D005058 5.0e-31 138.7 84 75.0
arahy.Tifrunner.gnm1.ann1.D4KK35 Arachis hypogaea HOM05D004366 ORTHO05D005058 1.2e-29 134.0 124 60.5
MSTRG.695 Avicennia marina HOM05D004366 ORTHO05D005058 8.0e-29 131.3 85 69.4
MCO13G325 Micromonas commoda HOM05D004366 ORTHO05D005058 8.8e-28 127.9 208 39.9
Lj6A789T49 Lonicera japonica HOM05D004366 ORTHO05D005058 1.2e-27 127.5 85 75.3
CSS0000370 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.8e-25 120.2 83 67.5
CSS0042124 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 3.1e-25 119.4 83 67.5
CAN.G154.11 Capsicum annuum HOM05D004366 ORTHO05D005058 7.0e-25 118.2 131 49.6
arahy.Tifrunner.gnm1.ann1.N9R1JE Arachis hypogaea HOM05D004366 ORTHO05D005058 1.3e-23 114.0 77 72.7
arahy.Tifrunner.gnm1.ann1.8CQ436 Arachis hypogaea HOM05D004366 ORTHO05D005058 3.8e-23 112.5 68 80.9
PGSC0003DMG400015729 Solanum tuberosum HOM05D004366 ORTHO05D005058 1.0e-20 104.4 97 59.8
BcaC07g37109 Brassica carinata HOM05D004366 ORTHO05D005058 9.8e-19 97.8 74 62.2
Rhsim11G0057700 Rhododendron simsii HOM05D004366 ORTHO05D005058 1.3e-18 97.4 70 71.4
C08p04780 Brassica napus HOM05D004366 ORTHO05D005058 2.9e-18 96.3 70 64.3
arahy.Tifrunner.gnm1.ann1.NKT7G2 Arachis hypogaea HOM05D004366 ORTHO05D005058 3.7e-18 95.9 115 52.2
BolC8t47277H Brassica oleracea HOM05D004366 ORTHO05D005058 5.4e-17 92.0 75 61.3
FAN07G2952 Fragaria x ananassa HOM05D004366 ORTHO05D005058 7.0e-17 91.7 69 63.8
PRCOL_00002884 Prasinoderma coloniale HOM05D004366 ORTHO05D005058 1.6e-16 90.5 194 33.0
Cre05.g244850 Chlamydomonas reinhardtii HOM05D004366 ORTHO05D005058 5.9e-16 88.6 195 30.8
Lsat_1_v5_gn_1_103541 Lactuca sativa HOM05D004366 ORTHO05D005058 2.1e-13 80.1 103 43.7
CANSAT54G0841 Cannabis sativa HOM05D001400 ORTHO05D001795 1.5e-11 73.9 51 62.7
AUR62028525 Chenopodium quinoa HOM05D004366 ORTHO05D000022 1.3e-10 70.9 45 71.1
SalBow1G5797 Salvia bowleyana HOM05D004366 ORTHO05D005058 5.4e-09 65.5 45 62.2
PSO339G3282 Papaver somniferum HOM05D000073 ORTHO05D000033 3.5e-08 62.8 50 60.0
A08p04480 Brassica napus HOM05D004366 ORTHO05D005058 3.0e-07 59.7 70 42.9
Atru.chr9.1643 Acer truncatum HOM05D004366 ORTHO05D005058 6.6e-07 58.5 42 66.7
TAR624G1239 Trochodendron aralioides HOM05D049658 ORTHO05D051498 3.3e-06 56.2 42 66.7
BraA08t32473Z Brassica rapa HOM05D004366 ORTHO05D005058 4.3e-06 55.8 40 60.0


User provided reference genes

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