Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G081900 Phaseolus vulgaris HOM05D010387 ORTHO05D012879 2.8e-78 295.0 135 100.0
Phvul.002G081800 Phaseolus vulgaris HOM05D010387 ORTHO05D012879 2.0e-76 288.9 135 97.8
Phvul.008G065200 Phaseolus vulgaris HOM05D010387 ORTHO05D012879 1.2e-73 279.6 135 93.3
Phvul.008G064900 Phaseolus vulgaris HOM05D010387 ORTHO05D012879 2.1e-73 278.9 135 93.3
Phvul.008G065100 Phaseolus vulgaris HOM05D010387 ORTHO05D012879 3.0e-72 275.0 135 90.4
VMungo1383G3343 Vigna mungo HOM05D010387 ORTHO05D012879 1.7e-59 232.6 134 74.6
Phvul.008G065000 Phaseolus vulgaris HOM05D010387 ORTHO05D012879 3.3e-58 228.4 135 80.7
Glyma.18G232566 Glycine max HOM05D010387 ORTHO05D012879 6.0e-28 127.9 139 46.8
Glyma.09G259700 Glycine max HOM05D010387 ORTHO05D012879 1.7e-27 126.3 141 47.5
Phvul.008G063050 Phaseolus vulgaris HOM05D010387 ORTHO05D012879 2.0e-23 112.8 135 43.0
Phvul.008G063300 Phaseolus vulgaris HOM05D010387 ORTHO05D012879 2.0e-23 112.8 135 42.2
Glyma.18G232632 Glycine max HOM05D010387 ORTHO05D012879 1.4e-21 106.7 134 42.5
Glyma.18G232500 Glycine max HOM05D010387 ORTHO05D012879 2.8e-17 92.4 135 39.3
Glyma.18G232700 Glycine max HOM05D010387 ORTHO05D012879 6.9e-16 87.8 139 39.6
Glyma.09G260000 Glycine max HOM05D036898 ORTHO05D035990 1.2e-15 87.0 137 33.6
VMungo1383G3327 Vigna mungo HOM05D010387 ORTHO05D012879 2.6e-15 85.9 137 34.3
Phvul.008G065450 Phaseolus vulgaris HOM05D036898 ORTHO05D035990 3.2e-13 79.0 134 32.8
Medtr1g058520 Medicago truncatula HOM05D000256 ORTHO05D000119 9.3e-13 77.4 122 36.9
Medtr1g057370 Medicago truncatula HOM05D000256 ORTHO05D000119 2.3e-11 72.8 137 32.8
Prupe.1G055500 Prunus persica HOM05D000256 ORTHO05D000119 3.0e-11 72.4 108 37.0
Psat6g084040 Pisum sativum HOM05D000256 ORTHO05D000119 5.1e-11 71.6 136 33.8
Medtr1g060940 Medicago truncatula HOM05D000256 ORTHO05D000119 1.5e-10 70.1 114 36.0
Lalb_Chr06g0176141 Lupinus albus HOM05D000256 ORTHO05D031557 2.5e-10 69.3 136 31.6
TPR.G5119 Trifolium pratense HOM05D000256 ORTHO05D000119 4.3e-10 68.6 116 35.3
Manes.03G153500 Manihot esculenta HOM05D000256 ORTHO05D000119 9.6e-10 67.4 132 33.3
Medtr1g057250 Medicago truncatula HOM05D000256 ORTHO05D000119 1.6e-09 66.6 128 32.0
Medtr1g060930 Medicago truncatula HOM05D000256 ORTHO05D000119 1.6e-09 66.6 115 34.8
Prupe.1G062300 Prunus persica HOM05D000256 ORTHO05D000119 2.8e-09 65.9 124 28.2
Medtr1g028420 Medicago truncatula HOM05D000256 ORTHO05D000119 3.7e-09 65.5 141 33.3
Lalb_Chr06g0176181 Lupinus albus HOM05D000256 ORTHO05D012879 4.8e-09 65.1 124 29.0
TPR.G22641 Trifolium pratense HOM05D000256 ORTHO05D000119 6.2e-09 64.7 115 33.9
Phvul.008G065300 Phaseolus vulgaris HOM05D010387 ORTHO05D012879 8.2e-09 64.3 133 31.6
Prupe.1G062400 Prunus persica HOM05D000256 ORTHO05D000119 8.2e-09 64.3 124 28.2
Medtr1g057310 Medicago truncatula HOM05D000256 ORTHO05D000119 1.8e-08 63.2 137 32.8
Lalb_Chr06g0176311 Lupinus albus HOM05D010387 ORTHO05D000119 2.4e-08 62.8 55 49.1
Manes.03G153250 Manihot esculenta HOM05D000256 ORTHO05D000119 2.4e-08 62.8 129 33.3
Lalb_Chr06g0176131 Lupinus albus HOM05D000256 ORTHO05D000119 3.1e-08 62.4 138 28.3
Lalb_Chr06g0176221 Lupinus albus HOM05D000256 ORTHO05D000119 4.0e-08 62.0 118 33.1
Lalb_Chr06g0176331 Lupinus albus HOM05D000256 ORTHO05D000119 4.0e-08 62.0 130 30.8
GSVIVG01014874001 Vitis vinifera HOM05D000256 ORTHO05D000119 4.0e-08 62.0 130 28.5
Thhalv10006292m.g Eutrema salsugineum HOM05D000256 ORTHO05D000119 5.3e-08 61.6 110 27.3
TPR.G943 Trifolium pratense HOM05D000256 ORTHO05D000119 5.3e-08 61.6 132 28.0
TPR.G5085 Trifolium pratense HOM05D000256 ORTHO05D000119 6.9e-08 61.2 111 31.5
Manes.03G154200 Manihot esculenta HOM05D000256 ORTHO05D000119 9.0e-08 60.8 129 32.6
TPR.G36139 Trifolium pratense HOM05D000256 ORTHO05D000119 9.0e-08 60.8 132 28.0
Aa31LG2G14700 Aethionema arabicum HOM05D000256 ORTHO05D000119 1.2e-07 60.5 131 29.8
Manes.03G153950 Manihot esculenta HOM05D000256 ORTHO05D000119 1.5e-07 60.1 127 28.3
Phvul.008G065350 Phaseolus vulgaris HOM05D010387 ORTHO05D012879 1.5e-07 60.1 136 31.6
Aa31LG10G5940 Aethionema arabicum HOM05D000256 ORTHO05D000119 2.6e-07 59.3 111 30.6
BcaC02g12403 Brassica carinata HOM05D000256 ORTHO05D000119 2.6e-07 59.3 128 26.6
Manes.03G153351 Manihot esculenta HOM05D000256 ORTHO05D000119 2.6e-07 59.3 129 30.2
AL3G29940 Arabidopsis lyrata HOM05D000256 ORTHO05D000119 3.4e-07 58.9 64 34.4
AL3G30060 Arabidopsis lyrata HOM05D000256 ORTHO05D000119 3.4e-07 58.9 102 31.4
Prupe.1G049500 Prunus persica HOM05D000256 ORTHO05D000119 3.4e-07 58.9 109 38.5
RcHm_v2.0_Chr4g0396771 Rosa chinensis HOM05D000256 ORTHO05D000119 3.4e-07 58.9 136 27.9
TPR.G20956 Trifolium pratense HOM05D000256 ORTHO05D000119 3.4e-07 58.9 96 32.3
Eucgr.H01302 Eucalyptus grandis HOM05D000256 ORTHO05D000119 4.5e-07 58.5 100 34.0
AT3G17080 Arabidopsis thaliana HOM05D000256 ORTHO05D000119 5.8e-07 58.2 64 35.9
Phvul.008G063600 Phaseolus vulgaris HOM05D000256 ORTHO05D000119 5.8e-07 58.2 148 29.1
THA.LOC104812007 Tarenaya hassleriana HOM05D000256 ORTHO05D000119 5.8e-07 58.2 100 32.0
Haze_13486 Corylus avellana HOM05D000256 ORTHO05D000119 7.6e-07 57.8 76 35.5
Prupe.1G062100 Prunus persica HOM05D000256 ORTHO05D000119 7.6e-07 57.8 90 35.6
FAN22G0130 Fragaria x ananassa HOM05D000256 ORTHO05D000119 1.0e-06 57.4 140 30.0
Lalb_Chr06g0176201 Lupinus albus HOM05D000256 ORTHO05D000119 1.0e-06 57.4 54 38.9
BcaC06g33456 Brassica carinata HOM05D000256 ORTHO05D000119 1.3e-06 57.0 115 32.2
C07p47740 Brassica napus HOM05D000256 ORTHO05D000119 1.3e-06 57.0 115 32.2
Cfa014872 Carpinus fangiana HOM05D000256 ORTHO05D000119 1.3e-06 57.0 58 39.7
arahy.Tifrunner.gnm1.ann1.7DU3RW Arachis hypogaea HOM05D010387 ORTHO05D031557 1.7e-06 56.6 56 44.6
BcaC07g37967 Brassica carinata HOM05D000256 ORTHO05D000119 2.2e-06 56.2 114 28.9
BcaC07g37968 Brassica carinata HOM05D000256 ORTHO05D000119 2.2e-06 56.2 114 28.9
BolC8t48347H Brassica oleracea HOM05D000256 ORTHO05D000119 2.2e-06 56.2 114 28.9
CiPaw.01G205000 Carya illinoinensis HOM05D000256 ORTHO05D000119 2.2e-06 56.2 127 28.3
MELO3C024072.2 Cucumis melo HOM05D000256 ORTHO05D000119 2.2e-06 56.2 106 33.0
Ciclev10006408m.g Citrus clementina HOM05D000256 ORTHO05D000119 2.9e-06 55.8 101 28.7
MELO3C030137.2 Cucumis melo HOM05D000256 ORTHO05D000119 2.9e-06 55.8 109 34.9
Lalb_Chr06g0175681 Lupinus albus HOM05D000256 ORTHO05D000119 2.9e-06 55.8 118 30.5
Lalb_Chr06g0175691 Lupinus albus HOM05D000256 ORTHO05D000119 2.9e-06 55.8 118 30.5
Lalb_Chr06g0175701 Lupinus albus HOM05D000256 ORTHO05D000119 2.9e-06 55.8 118 30.5
TPR.G21841 Trifolium pratense HOM05D000256 ORTHO05D000119 2.9e-06 55.8 127 30.7
Lalb_Chr06g0176211 Lupinus albus HOM05D000256 ORTHO05D000119 3.8e-06 55.5 54 44.4
A01p37270 Brassica napus HOM05D000256 ORTHO05D000119 4.9e-06 55.1 63 34.9
MD17G1052700 Malus domestica HOM05D000256 ORTHO05D000119 4.9e-06 55.1 59 39.0
Manes.03G153550 Manihot esculenta HOM05D000256 ORTHO05D000119 4.9e-06 55.1 123 28.5
Manes.03G153800 Manihot esculenta HOM05D000256 ORTHO05D000119 4.9e-06 55.1 59 40.7
BcaC09g48659 Brassica carinata HOM05D000256 ORTHO05D000119 6.5e-06 54.7 64 37.5
BolC1t04691H Brassica oleracea HOM05D000256 ORTHO05D000119 6.5e-06 54.7 64 37.5
CiPaw.01G204900 Carya illinoinensis HOM05D000256 ORTHO05D000119 6.5e-06 54.7 127 27.6
ClCG06G007560 Citrullus lanatus HOM05D000256 ORTHO05D000119 6.5e-06 54.7 138 28.3
Medtr1g068650 Medicago truncatula HOM05D000256 ORTHO05D000119 6.5e-06 54.7 44 47.7
Phvul.008G062900 Phaseolus vulgaris HOM05D000256 ORTHO05D000119 6.5e-06 54.7 127 33.9
TPR.G8259 Trifolium pratense HOM05D000256 ORTHO05D000119 6.5e-06 54.7 138 29.7


User provided reference genes

Program Settings