Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G081300 Phaseolus vulgaris HOM05D003751 ORTHO05D004765 5.0e-76 288.9 330 100.0
VMungo1215G2610 Vigna mungo HOM05D003751 ORTHO05D004765 5.7e-72 275.4 330 97.9
Glyma.01G056300 Glycine max HOM05D003751 ORTHO05D004765 7.0e-70 268.5 330 97.0
Glyma.02G114800 Glycine max HOM05D003751 ORTHO05D004765 7.0e-70 268.5 330 96.7
Ca_04940_v3 Cicer arietinum L. HOM05D003751 ORTHO05D004765 3.6e-66 256.1 330 94.5
Lj2g0008638 Lotus japonicus HOM05D003751 ORTHO05D004765 1.0e-65 254.6 330 94.5
TPR.G24438 Trifolium pratense HOM05D003751 ORTHO05D004765 6.7e-65 251.9 330 93.6
Medtr5g043800 Medicago truncatula HOM05D003751 ORTHO05D004765 1.1e-64 251.1 330 93.9
arahy.Tifrunner.gnm1.ann1.V223R1 Arachis hypogaea HOM05D003751 ORTHO05D004765 5.7e-64 248.8 330 94.2
arahy.Tifrunner.gnm1.ann1.Y3WTJM Arachis hypogaea HOM05D003751 ORTHO05D004765 5.7e-64 248.8 330 94.2
Psat2g128600 Pisum sativum HOM05D003751 ORTHO05D004765 5.7e-64 248.8 326 95.1
Lalb_Chr10g0098641 Lupinus albus HOM05D003751 ORTHO05D004765 7.4e-64 248.4 330 93.6
Lalb_Chr17g0341071 Lupinus albus HOM05D003751 ORTHO05D004765 7.4e-64 248.4 330 93.6
CiPaw.05G127300 Carya illinoinensis HOM05D003751 ORTHO05D004765 3.2e-59 233.0 330 91.8
TAR622G0005 Trochodendron aralioides HOM05D003751 ORTHO05D004765 2.7e-58 229.9 326 87.4
GSVIVG01012205001 Vitis vinifera HOM05D003751 ORTHO05D004765 4.7e-58 229.2 325 92.9
Manes.05G108200 Manihot esculenta HOM05D003751 ORTHO05D004765 2.3e-57 226.9 321 91.3
ECA233G2546 Erigeron canadensis HOM05D003751 ORTHO05D004765 3.0e-57 226.5 317 93.4
CANSAT80G0608 Cannabis sativa HOM05D003751 ORTHO05D004765 5.2e-57 225.7 318 92.5
CANSAT80G1362 Cannabis sativa HOM05D003751 ORTHO05D004765 5.2e-57 225.7 318 92.5
Cpa.g.sc1.101 Carica papaya HOM05D003751 ORTHO05D004765 5.2e-57 225.7 323 92.0
CiPaw.06G090700 Carya illinoinensis HOM05D003751 ORTHO05D004765 5.2e-57 225.7 330 90.6
Hma1.2p1_0357F.1_g134490 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 6.8e-57 225.3 320 93.1
CAN.G541.15 Capsicum annuum HOM05D003751 ORTHO05D004765 8.8e-57 224.9 322 92.5
PGSC0003DMG400004190 Solanum tuberosum HOM05D003751 ORTHO05D004765 1.2e-56 224.6 322 92.9
Cfa008900 Carpinus fangiana HOM05D003751 ORTHO05D004765 2.0e-56 223.8 321 92.8
Lj6A782T110 Lonicera japonica HOM05D003751 ORTHO05D004765 2.0e-56 223.8 328 90.5
Potri.010G160700 Populus trichocarpa HOM05D003751 ORTHO05D004765 2.0e-56 223.8 312 92.9
COL.COLO4_36892 Corchorus olitorius HOM05D003751 ORTHO05D004765 2.6e-56 223.4 321 91.6
Solyc01g011040.3 Solanum lycopersicum HOM05D003751 ORTHO05D004765 2.6e-56 223.4 323 92.6
Sopen01g034040 Solanum pennellii HOM05D003751 ORTHO05D004765 2.6e-56 223.4 323 92.6
Nitab4.5_0000720g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 3.4e-56 223.0 306 95.4
Nitab4.5_0002832g0050 Nicotiana tabacum HOM05D003751 ORTHO05D004765 3.4e-56 223.0 306 95.4
FAN17G0137 Fragaria x ananassa HOM05D003751 ORTHO05D004765 5.7e-56 222.2 321 92.8
Lsat_1_v5_gn_4_12041 Lactuca sativa HOM05D003751 ORTHO05D004765 5.7e-56 222.2 304 95.4
Lsat_1_v5_gn_8_48161 Lactuca sativa HOM05D003751 ORTHO05D004765 5.7e-56 222.2 325 91.7
Prupe.1G283000 Prunus persica HOM05D003751 ORTHO05D004765 5.7e-56 222.2 325 91.7
FAN22G1318 Fragaria x ananassa HOM05D003751 ORTHO05D004765 7.5e-56 221.9 321 92.5
RcHm_v2.0_Chr4g0438711 Rosa chinensis HOM05D003751 ORTHO05D004765 7.5e-56 221.9 325 91.7
Actinidia33247 Actinidia chinensis HOM05D003751 ORTHO05D004765 9.8e-56 221.5 323 91.0
Actinidia12325 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.3e-55 221.1 323 90.7
Gohir.A07G069400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.3e-55 221.1 309 94.2
HanXRQChr08g0211521 Helianthus annuus HOM05D003751 ORTHO05D004765 1.3e-55 221.1 323 91.6
Hund05853 Selenicereus undatus HOM05D003751 ORTHO05D004765 1.7e-55 220.7 320 89.7
Gorai.001G078000 Gossypium raimondii HOM05D003751 ORTHO05D004765 2.2e-55 220.3 309 93.9
Potri.008G093400 Populus trichocarpa HOM05D003751 ORTHO05D004765 2.2e-55 220.3 324 90.4
Gohir.A12G180500 Gossypium hirsutum HOM05D003751 ORTHO05D004765 3.7e-55 219.5 327 88.4
Gohir.D07G073800 Gossypium hirsutum HOM05D003751 ORTHO05D004765 3.7e-55 219.5 330 89.1
Sabra08G0070200 Salix brachista HOM05D003751 ORTHO05D004765 3.7e-55 219.5 324 90.1
QL03p071051 Quercus lobata HOM05D003751 ORTHO05D004765 6.3e-55 218.8 324 88.6
Thecc.03G096900 Theobroma cacao HOM05D003751 ORTHO05D004765 6.3e-55 218.8 311 94.2
Manes.01G029800 Manihot esculenta HOM05D003751 ORTHO05D004765 8.3e-55 218.4 320 90.0
HanXRQChr12g0379561 Helianthus annuus HOM05D003751 ORTHO05D004765 1.4e-54 217.6 303 95.7
MD13G1065200 Malus domestica HOM05D003751 ORTHO05D004765 1.4e-54 217.6 327 90.8
MD16G1063500 Malus domestica HOM05D003751 ORTHO05D004765 1.4e-54 217.6 326 90.8
Rhsim12G0134600 Rhododendron simsii HOM05D003751 ORTHO05D004765 1.4e-54 217.6 332 80.1
Duzib205G0623 Durio zibethinus HOM05D003751 ORTHO05D004765 1.8e-54 217.2 311 91.6
Nn4g23361 Nelumbo nucifera HOM05D003751 ORTHO05D004765 1.8e-54 217.2 329 88.8
Sc11g0002320 Simmondsia chinensis HOM05D003751 ORTHO05D004765 1.8e-54 217.2 326 87.1
PSO063G1864 Papaver somniferum HOM05D003751 ORTHO05D004765 2.4e-54 216.9 328 89.6
Migut.L01211 Erythranthe guttata HOM05D003751 ORTHO05D004765 3.1e-54 216.5 325 90.8
TWI79G0662 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 3.1e-54 216.5 323 92.0
Ciclev10021138m.g Citrus clementina HOM05D003751 ORTHO05D004765 4.1e-54 216.1 312 93.9
Cc11_g12270 Coffea canephora HOM05D003751 ORTHO05D004765 5.4e-54 215.7 320 92.5
Gorai.008G196500 Gossypium raimondii HOM05D003751 ORTHO05D004765 5.4e-54 215.7 326 89.3
CsaV3_5G033180 Cucumis sativus L. HOM05D003751 ORTHO05D004765 9.1e-54 214.9 323 90.1
THA.LOC104818332 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 9.1e-54 214.9 319 91.8
Sed0012304 Sechium edule HOM05D003751 ORTHO05D004765 2.7e-53 213.4 306 92.2
Nn3g17386 Nelumbo nucifera HOM05D003751 ORTHO05D004765 3.5e-53 213.0 323 88.9
SGA_v2.0_scaffold36G14436 Striga asiatica HOM05D003751 ORTHO05D004765 3.5e-53 213.0 325 90.8
Ah.03g139090 Amaranthus hybridus HOM05D003751 ORTHO05D004765 4.5e-53 212.6 321 88.2
MSTRG.7761 Avicennia marina HOM05D003751 ORTHO05D004765 4.5e-53 212.6 325 89.8
Peaxi162Scf00097g00610 Petunia axillaris HOM05D003751 ORTHO05D004765 7.7e-53 211.8 337 62.6
Migut.E00057 Erythranthe guttata HOM05D003751 ORTHO05D004765 1.0e-52 211.5 324 90.1
THA.LOC104801343 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 1.0e-52 211.5 323 89.8
A03p46870 Brassica napus HOM05D003751 ORTHO05D004765 1.7e-52 210.7 320 90.9
BcaC06g33170 Brassica carinata HOM05D003751 ORTHO05D004765 2.2e-52 210.3 309 93.2
BcaC06g33219 Brassica carinata HOM05D003751 ORTHO05D004765 2.2e-52 210.3 319 90.9
C07p44920 Brassica napus HOM05D003751 ORTHO05D004765 2.2e-52 210.3 319 90.9
Hund14089 Selenicereus undatus HOM05D003751 ORTHO05D004765 2.2e-52 210.3 312 88.5
CARHR274990 Cardamine hirsuta HOM05D003751 ORTHO05D004765 3.8e-52 209.5 309 92.9
Duzib251G0914 Durio zibethinus HOM05D003751 ORTHO05D004765 5.0e-52 209.1 321 89.7
Actinidia19010 Actinidia chinensis HOM05D003751 ORTHO05D004765 6.5e-52 208.8 315 90.2
Eucgr.B03173 Eucalyptus grandis HOM05D003751 ORTHO05D004765 6.5e-52 208.8 317 90.2
SGA_v2.0_scaffold16G07765 Striga asiatica HOM05D003751 ORTHO05D004765 6.5e-52 208.8 325 90.2
AT5G61240 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 8.5e-52 208.4 312 91.7
Carub.0008s2191 Capsella rubella HOM05D003751 ORTHO05D004765 8.5e-52 208.4 320 90.3
Sp2g24470 Schrenkiella parvula HOM05D003751 ORTHO05D004765 8.5e-52 208.4 320 90.3
AL8G37900 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 1.1e-51 208.0 320 90.3
PGR102G2931 Punica granatum HOM05D003751 ORTHO05D004765 1.5e-51 207.6 328 86.6
A09p07270 Brassica napus HOM05D003751 ORTHO05D004765 1.9e-51 207.2 309 92.9
Dinv34089 Davidia involucrata HOM05D003751 ORTHO05D004765 1.9e-51 207.2 297 94.9
Thhalv10004587m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 1.9e-51 207.2 320 90.3
Thecc.02G335000 Theobroma cacao HOM05D003751 ORTHO05D004765 1.9e-51 207.2 327 88.1
Hma1.2p1_0322F.1_g124910 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 2.5e-51 206.8 317 90.5
AUR62007943 Chenopodium quinoa HOM05D003751 ORTHO05D004765 5.5e-51 205.7 320 76.6
Sed0016795 Sechium edule HOM05D003751 ORTHO05D004765 7.2e-51 205.3 326 88.7
BcaC04g23458 Brassica carinata HOM05D003751 ORTHO05D004765 9.4e-51 204.9 318 90.6
C09p08130 Brassica napus HOM05D003751 ORTHO05D004765 9.4e-51 204.9 309 92.6
Aa31LG11G2120 Aethionema arabicum HOM05D003751 ORTHO05D004765 1.6e-50 204.1 322 90.1
CDE07G1785 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 1.6e-50 204.1 319 88.7
vmacro01326 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 1.6e-50 204.1 347 65.1
Haze_11929 Corylus avellana HOM05D003751 ORTHO05D004765 2.7e-50 203.4 363 67.5
COL.COLO4_27919 Corchorus olitorius HOM05D003751 ORTHO05D004765 3.6e-50 203.0 319 87.8
CSS0038990 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 4.7e-50 202.6 333 78.7
SEGI_02286 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 1.4e-49 201.1 319 87.5
BraA03t13807Z Brassica rapa HOM05D003751 ORTHO05D004765 1.8e-49 200.7 329 76.6
BolC7t45015H Brassica oleracea HOM05D003751 ORTHO05D004765 3.0e-49 199.9 335 74.0
TWI75G1095 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 5.2e-49 199.1 251 87.6
Peaxi162Scf00314g00122 Petunia axillaris HOM05D003751 ORTHO05D004765 6.8e-49 198.7 296 92.6
Sabra10G0122300 Salix brachista HOM05D003751 ORTHO05D004765 2.0e-48 197.2 233 92.3
SalBow2G2522 Salvia bowleyana HOM05D003751 ORTHO05D004765 7.5e-48 195.3 342 85.7
BraA09t36376Z Brassica rapa HOM05D003751 ORTHO05D004765 1.3e-47 194.5 328 74.4
AUR62003123 Chenopodium quinoa HOM05D003751 ORTHO05D004765 1.7e-47 194.1 241 87.6
MSTRG.738 Avicennia marina HOM05D003751 ORTHO05D004765 3.7e-47 193.0 325 86.2
THA.LOC104824065 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 8.3e-47 191.8 319 85.9
Gohir.D02G128600 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.1e-46 191.4 321 84.7
Gorai.005G144300 Gossypium raimondii HOM05D003751 ORTHO05D004765 1.1e-46 191.4 321 84.7
SalBow2G2568 Salvia bowleyana HOM05D003751 ORTHO05D004765 1.4e-46 191.0 342 77.8
FvH4_4g30420 Fragaria vesca HOM05D003751 ORTHO05D004765 2.4e-46 190.3 325 88.0
Aqoxy3G03571 Aquilegia oxysepala HOM05D003751 ORTHO05D004765 4.1e-46 189.5 322 87.3
PSO384G1483 Papaver somniferum HOM05D003751 ORTHO05D004765 3.5e-45 186.4 316 88.9
MELO3C002928.2 Cucumis melo HOM05D003751 ORTHO05D004765 5.9e-45 185.7 326 86.5
Gohir.D12G183125 Gossypium hirsutum HOM05D003751 ORTHO05D004765 7.7e-45 185.3 326 79.1
Gohir.D12G183200 Gossypium hirsutum HOM05D003751 ORTHO05D004765 7.7e-45 185.3 326 79.1
SHI26375 Sapria himalayana HOM05D003751 ORTHO05D004765 1.0e-44 184.9 251 69.3
ATR0064G031 Amborella trichopoda HOM05D003751 ORTHO05D004765 2.9e-44 183.3 310 87.4
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 8.6e-44 181.8 317 78.9
CsaV3_5G025510 Cucumis sativus L. HOM05D003751 ORTHO05D004765 1.9e-43 180.6 327 86.5
Sp1g12050 Schrenkiella parvula HOM05D003751 ORTHO05D004765 2.5e-43 180.3 323 82.7
AL1G25740 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 4.2e-43 179.5 323 82.7
DCAR_007183 Daucus carota HOM05D003751 ORTHO05D004765 1.6e-42 177.6 338 81.1
CSS0000444 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 6.1e-42 175.6 332 68.4
Thhalv10008166m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 6.1e-42 175.6 323 84.2
AT1G13910 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 1.8e-41 174.1 315 83.8
FAN12G0947 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.8e-41 174.1 339 74.3
MBI16_g16360_MAGBIO Magnolia biondii HOM05D003751 ORTHO05D004765 3.0e-41 173.3 313 86.9
SalBow2G0317 Salvia bowleyana HOM05D003751 ORTHO05D004765 8.9e-41 171.8 222 94.1
ClCG09G022210 Citrullus lanatus HOM05D003751 ORTHO05D004765 2.0e-40 170.6 331 71.0
Dinv38780 Davidia involucrata HOM05D003751 ORTHO05D004765 2.0e-40 170.6 95 84.2
FAN07G2601 Fragaria x ananassa HOM05D003751 ORTHO05D004765 7.5e-40 168.7 99 82.8
vmacro16373 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 3.7e-39 166.4 102 78.4
vmacro23251 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 3.7e-39 166.4 102 78.4
QL03p070738 Quercus lobata HOM05D003751 ORTHO05D004765 4.9e-39 166.0 99 81.8
Cpa.g.sc94.5 Carica papaya HOM05D003751 ORTHO05D004765 1.4e-38 164.5 321 52.6
MELO3C012139.2 Cucumis melo HOM05D003751 ORTHO05D004765 2.4e-38 163.7 99 81.8
HPP92_007743 Vanilla planifolia HOM05D003751 ORTHO05D004765 2.4e-38 163.7 102 78.4
Carub.0001s1361 Capsella rubella HOM05D003751 ORTHO05D004765 3.2e-38 163.3 244 82.0
ClCG05G023830 Citrullus lanatus HOM05D003751 ORTHO05D004765 7.0e-38 162.2 79 93.7
DCAR_005254 Daucus carota HOM05D003751 ORTHO05D004765 1.6e-37 161.0 97 78.4
DCAR_016919 Daucus carota HOM05D003751 ORTHO05D004765 1.6e-37 161.0 97 78.4
CDE04G0854 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 2.0e-37 160.6 95 78.9
Zm00001eb008460 Zea mays HOM05D003751 ORTHO05D004765 1.3e-36 157.9 89 82.0
Os03g0211900 Oryza sativa ssp. japonica HOM05D003751 ORTHO05D004765 3.9e-36 156.4 94 78.7
Aa31LG1G1100 Aethionema arabicum HOM05D002953 ORTHO05D003249 1.5e-35 154.5 243 80.2
CARHR014280 Cardamine hirsuta HOM05D003751 ORTHO05D004765 1.6e-29 134.4 96 63.5
Hund25193 Selenicereus undatus HOM05D003751 ORTHO05D004765 7.8e-29 132.1 73 83.6
AagrBONN_evm.TU.Sc2ySwM_228.5257 Anthoceros agrestis HOM05D003751 ORTHO05D004765 1.0e-28 131.7 324 76.2
SMO307G0068 Selaginella moellendorffii HOM05D003751 ORTHO05D004765 9.5e-27 125.2 304 78.3
Oeu031422.1 Olea europaea HOM05D003751 ORTHO05D004765 1.6e-26 124.4 78 78.2
Actinidia28633 Actinidia chinensis HOM05D003751 ORTHO05D004765 2.1e-26 124.0 276 81.2
Nitab4.5_0017073g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 4.3e-19 99.8 65 73.8
Nitab4.5_0004304g0080 Nicotiana tabacum HOM05D003751 ORTHO05D004765 2.1e-18 97.4 73 67.1
CSS0008157 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 4.7e-18 96.3 118 89.8
Sopen05g021560 Solanum pennellii HOM05D003751 ORTHO05D004765 3.1e-17 93.6 50 82.0
SMO239G0097 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 2.0e-16 90.9 64 62.5
SMO239G0021 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 2.6e-16 90.5 90 47.8
Dinv16710 Davidia involucrata HOM05D003751 ORTHO05D004765 1.3e-15 88.2 247 69.2
Lj3A1031T31 Lonicera japonica HOM05D003751 ORTHO05D004765 1.7e-15 87.8 118 53.4
SEGI_40768 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 8.4e-15 85.5 65 61.5
Gohir.A03G103400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.1e-14 85.1 259 85.7
Sopen05g021540 Solanum pennellii HOM05D003751 ORTHO05D004765 3.5e-13 80.1 43 83.7
RcHm_v2.0_Chr3g0459551 Rosa chinensis HOM05D003751 ORTHO05D004765 6.6e-12 75.9 48 79.2
CAN.G607.6 Capsicum annuum HOM05D003751 ORTHO05D024790 1.9e-11 74.3 41 87.8
Gohir.D13G128551 Gossypium hirsutum HOM05D003751 ORTHO05D024790 6.2e-10 69.3 41 80.5
Gorai.013G144600 Gossypium raimondii HOM05D003751 ORTHO05D024790 5.2e-09 66.2 41 78.0
BraA02t09094Z Brassica rapa HOM05D003751 ORTHO05D004765 2.0e-08 64.3 38 78.9
BolC2t12198H Brassica oleracea HOM05D003751 ORTHO05D017703 2.6e-08 63.9 97 46.4
C02p61470 Brassica napus HOM05D003751 ORTHO05D017703 2.2e-07 60.8 97 44.3
Sopen01g022300 Solanum pennellii HOM05D003751 ORTHO05D004765 4.9e-07 59.7 32 84.4


User provided reference genes

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