Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G080900 Phaseolus vulgaris HOM05D006025 ORTHO05D008547 1.8e-176 622.5 318 100.0
VMungo1215G1908 Vigna mungo HOM05D006025 ORTHO05D008547 2.6e-154 548.9 300 92.7
Glyma.01G040500 Glycine max HOM05D006025 ORTHO05D008547 1.3e-153 546.6 322 87.9
Lj2g0002167 Lotus japonicus HOM05D006025 ORTHO05D008547 1.3e-134 483.4 321 79.1
TPR.G26717 Trifolium pratense HOM05D006025 ORTHO05D008547 1.4e-123 446.8 319 74.9
Ca_04692_v3 Cicer arietinum L. HOM05D006025 ORTHO05D008547 1.8e-123 446.4 318 74.5
Lalb_Chr05g0217521 Lupinus albus HOM05D006025 ORTHO05D008547 2.0e-122 443.0 324 73.1
Psat2g115440 Pisum sativum HOM05D006025 ORTHO05D008547 3.7e-121 438.7 320 73.1
Medtr5g037600 Medicago truncatula HOM05D006025 ORTHO05D008547 3.2e-120 435.6 323 73.1
arahy.Tifrunner.gnm1.ann1.1ZL8TB Arachis hypogaea HOM05D006025 ORTHO05D008547 1.5e-114 416.8 331 69.2
arahy.Tifrunner.gnm1.ann1.V5YJYF Arachis hypogaea HOM05D006025 ORTHO05D008547 1.5e-114 416.8 331 69.2
CANSAT78G1034 Cannabis sativa HOM05D006025 ORTHO05D008547 1.9e-109 399.8 322 65.8
Manes.05G096000 Manihot esculenta HOM05D006025 ORTHO05D008547 1.9e-109 399.8 322 67.1
COL.COLO4_36182 Corchorus olitorius HOM05D006025 ORTHO05D008547 1.8e-107 393.3 327 67.9
Actinidia31175 Actinidia chinensis HOM05D006025 ORTHO05D008547 4.0e-107 392.1 305 68.5
QL03p065944 Quercus lobata HOM05D006025 ORTHO05D008547 5.8e-106 388.3 318 66.4
Thecc.02G232800 Theobroma cacao HOM05D006025 ORTHO05D008547 2.9e-105 386.0 323 66.9
Ciclev10032129m.g Citrus clementina HOM05D006025 ORTHO05D008547 3.8e-105 385.6 326 65.0
Cfa009042 Carpinus fangiana HOM05D006025 ORTHO05D008547 1.1e-104 384.0 320 65.0
MD13G1079600 Malus domestica HOM05D006025 ORTHO05D008547 1.4e-104 383.6 325 64.0
Dinv34195 Davidia involucrata HOM05D006025 ORTHO05D008547 3.2e-104 382.5 310 66.1
Sabra10G0030400 Salix brachista HOM05D006025 ORTHO05D008547 7.1e-104 381.3 280 72.1
Prupe.1G267200 Prunus persica HOM05D006025 ORTHO05D008547 4.6e-103 378.6 325 64.3
MD16G1079500 Malus domestica HOM05D006025 ORTHO05D008547 7.8e-103 377.9 318 64.2
Potri.010G034400 Populus trichocarpa HOM05D006025 ORTHO05D008547 2.3e-102 376.3 278 72.3
GSVIVG01020079001 Vitis vinifera HOM05D006025 ORTHO05D008547 8.7e-102 374.4 273 70.3
FAN22G0508 Fragaria x ananassa HOM05D006025 ORTHO05D008547 1.1e-101 374.0 323 64.1
FAN12G1990 Fragaria x ananassa HOM05D006025 ORTHO05D008547 1.5e-101 373.6 321 63.9
CiPaw.05G140400 Carya illinoinensis HOM05D006025 ORTHO05D008547 2.5e-101 372.9 310 65.2
FvH4_4g32070 Fragaria vesca HOM05D006025 ORTHO05D008547 4.3e-101 372.1 325 63.1
Gorai.009G347000 Gossypium raimondii HOM05D006025 ORTHO05D008547 4.3e-101 372.1 317 64.0
PGR119G0173 Punica granatum HOM05D006025 ORTHO05D008547 5.6e-101 371.7 315 63.8
FAN07G0827 Fragaria x ananassa HOM05D006025 ORTHO05D008547 1.3e-100 370.5 321 64.2
Gohir.D05G323300 Gossypium hirsutum HOM05D006025 ORTHO05D008547 2.1e-100 369.8 324 62.3
TWI18G0579 Tripterygium wilfordii HOM05D006025 ORTHO05D008547 8.1e-100 367.9 331 59.2
Gohir.A05G321100 Gossypium hirsutum HOM05D006025 ORTHO05D008547 2.4e-99 366.3 321 63.2
Rhsim12G0129700 Rhododendron simsii HOM05D006025 ORTHO05D008547 4.0e-99 365.5 322 62.7
RcHm_v2.0_Chr4g0440761 Rosa chinensis HOM05D006025 ORTHO05D008547 4.0e-99 365.5 325 61.5
Cpa.g.sc73.14 Carica papaya HOM05D006025 ORTHO05D008547 2.6e-98 362.8 330 60.9
Lj6A795T74 Lonicera japonica HOM05D006025 ORTHO05D008547 4.5e-98 362.1 306 63.7
Atru.chr11.1861 Acer truncatum HOM05D006025 ORTHO05D008547 2.2e-97 359.8 327 63.3
Sed0022227 Sechium edule HOM05D006025 ORTHO05D008547 3.8e-97 359.0 313 62.9
Sc11g0001660 Simmondsia chinensis HOM05D006025 ORTHO05D008547 3.8e-97 359.0 265 69.4
vmacro16324 Vaccinium macrocarpon HOM05D006025 ORTHO05D008547 4.9e-97 358.6 364 59.1
CAN.G27.7 Capsicum annuum HOM05D006025 ORTHO05D008547 1.1e-96 357.5 332 60.2
Migut.E00118 Erythranthe guttata HOM05D006025 ORTHO05D008547 5.4e-96 355.1 325 60.0
Nitab4.5_0000679g0100 Nicotiana tabacum HOM05D006025 ORTHO05D008547 4.6e-95 352.1 249 72.7
Carub.0005s0158 Capsella rubella HOM05D006025 ORTHO05D008547 1.0e-94 350.9 323 60.7
Cc11_g13550 Coffea canephora HOM05D006025 ORTHO05D008547 1.8e-94 350.1 277 65.0
CsaV3_5G032300 Cucumis sativus L. HOM05D006025 ORTHO05D008547 2.3e-94 349.7 317 61.5
MELO3C012062.2 Cucumis melo HOM05D006025 ORTHO05D008547 5.1e-94 348.6 317 61.5
Hund25274 Selenicereus undatus HOM05D006025 ORTHO05D008547 5.1e-94 348.6 310 63.5
EL10Ac6g13142 Beta vulgaris HOM05D006025 ORTHO05D008547 6.7e-94 348.2 314 61.8
BcaC06g34048 Brassica carinata HOM05D006025 ORTHO05D008547 8.7e-94 347.8 283 65.0
C07p33300 Brassica napus HOM05D006025 ORTHO05D008547 8.7e-94 347.8 283 65.0
Duzib268G1145 Durio zibethinus HOM05D006025 ORTHO05D008547 8.7e-94 347.8 301 65.1
AL5G11850 Arabidopsis lyrata HOM05D006025 ORTHO05D008547 1.5e-93 347.1 321 60.4
Migut.L01348 Erythranthe guttata HOM05D006025 ORTHO05D008547 1.5e-93 347.1 296 62.8
AT2G02590 Arabidopsis thaliana HOM05D006025 ORTHO05D008547 1.9e-93 346.7 242 71.9
Thhalv10004613m.g Eutrema salsugineum HOM05D006025 ORTHO05D008547 1.9e-93 346.7 324 60.2
ClCG05G024630 Citrullus lanatus HOM05D006025 ORTHO05D008547 7.4e-93 344.7 284 64.4
Sp2g13810 Schrenkiella parvula HOM05D006025 ORTHO05D008547 7.4e-93 344.7 242 71.1
BolC7t43841H Brassica oleracea HOM05D006025 ORTHO05D008547 1.3e-92 344.0 230 74.3
Aa31LG2G7560 Aethionema arabicum HOM05D006025 ORTHO05D008547 6.2e-92 341.7 317 59.3
TAR481G0011 Trochodendron aralioides HOM05D006025 ORTHO05D008547 6.2e-92 341.7 327 58.7
SalBow8G3437 Salvia bowleyana HOM05D006025 ORTHO05D008547 8.1e-92 341.3 261 67.4
BcaC06g31223 Brassica carinata HOM05D006025 ORTHO05D008547 1.4e-91 340.5 227 73.6
Nn4g23031 Nelumbo nucifera HOM05D006025 ORTHO05D008547 1.8e-91 340.1 330 59.1
A06p43550 Brassica napus HOM05D006025 ORTHO05D008547 2.4e-91 339.7 245 69.4
BraA06t27240Z Brassica rapa HOM05D006025 ORTHO05D008547 4.0e-91 339.0 230 73.0
BraA09t37996Z Brassica rapa HOM05D006025 ORTHO05D008547 5.3e-91 338.6 256 66.4
A09p23920 Brassica napus HOM05D006025 ORTHO05D008547 6.9e-91 338.2 256 66.0
CARHR145110 Cardamine hirsuta HOM05D006025 ORTHO05D008547 1.2e-90 337.4 319 59.6
Haze_12072 Corylus avellana HOM05D006025 ORTHO05D008547 7.6e-90 334.7 291 64.3
THA.LOC104805137 Tarenaya hassleriana HOM05D000131 ORTHO05D000086 4.9e-89 332.0 326 58.0
C09p30780 Brassica napus HOM05D006025 ORTHO05D008547 3.2e-88 329.3 252 67.5
Sopen05g002930 Solanum pennellii HOM05D006025 ORTHO05D008547 7.1e-88 328.2 297 59.6
PGSC0003DMG400017619 Solanum tuberosum HOM05D006025 ORTHO05D008547 9.3e-88 327.8 293 60.1
Ah.03g132040 Amaranthus hybridus HOM05D006025 ORTHO05D008547 1.2e-87 327.4 239 70.3
BcaC04g21520 Brassica carinata HOM05D006025 ORTHO05D008547 3.5e-87 325.9 266 63.5
CSS0050443 Camellia sinensis var. sinensis HOM05D006025 ORTHO05D008547 3.5e-87 325.9 198 80.8
HanXRQChr15g0478181 Helianthus annuus HOM05D006025 ORTHO05D008547 4.6e-87 325.5 268 63.8
BolC9t55941H Brassica oleracea HOM05D006025 ORTHO05D008547 6.0e-87 325.1 244 69.3
PSO478G1322 Papaver somniferum HOM05D006025 ORTHO05D008547 3.0e-86 322.8 310 58.7
ATR0665G167 Amborella trichopoda HOM05D006025 ORTHO05D008547 6.7e-86 321.6 277 63.2
Oeu044566.1 Olea europaea HOM05D006025 ORTHO05D008547 1.1e-85 320.9 228 71.5
DCAR_024490 Daucus carota HOM05D006025 ORTHO05D008547 1.9e-85 320.1 205 76.6
Eucgr.B02589 Eucalyptus grandis HOM05D006025 ORTHO05D008547 3.7e-84 315.8 288 60.8
SGA_v2.0_scaffold87G26972 Striga asiatica HOM05D006025 ORTHO05D008547 3.7e-84 315.8 311 55.3
MSTRG.7831 Avicennia marina HOM05D006025 ORTHO05D008547 6.2e-84 315.1 281 59.4
MBI04_g22196_MAGBIO Magnolia biondii HOM05D006025 ORTHO05D008547 3.1e-83 312.8 196 77.0
AUR62026262 Chenopodium quinoa HOM05D006025 ORTHO05D008547 1.2e-82 310.8 203 75.9
Aqoxy3G00786 Aquilegia oxysepala HOM05D006025 ORTHO05D008547 2.6e-82 309.7 337 53.4
Lsat_1_v5_gn_3_49700 Lactuca sativa HOM05D006025 ORTHO05D008547 2.6e-82 309.7 273 58.2
Peaxi162Scf00209g00517 Petunia axillaris HOM05D006025 ORTHO05D008547 2.6e-82 309.7 310 55.2
Nitab4.5_0002969g0040 Nicotiana tabacum HOM05D006025 ORTHO05D008547 1.1e-80 304.3 252 63.5
Os03g0800500 Oryza sativa ssp. japonica HOM05D006025 ORTHO05D008547 1.1e-80 304.3 201 73.6
Glyma.02G024100 Glycine max HOM05D006025 ORTHO05D008547 3.5e-79 299.3 203 79.3
AUR62026454 Chenopodium quinoa HOM05D006025 ORTHO05D008547 7.9e-79 298.1 199 76.9
HanXRQChr17g0544581 Helianthus annuus HOM05D006025 ORTHO05D008547 1.8e-78 297.0 256 61.3
BcaB07g30697 Brassica carinata HOM05D006025 ORTHO05D008547 8.7e-78 294.7 227 67.0
unitig_62.g23684 Utricularia gibba HOM05D006025 ORTHO05D008547 1.3e-76 290.8 287 54.7
ECA246G2177 Erigeron canadensis HOM05D006025 ORTHO05D008547 2.8e-76 289.7 206 70.9
SalBow2G1916 Salvia bowleyana HOM05D006025 ORTHO05D008547 1.1e-75 287.7 318 51.9
SEGI_16485 Sequoiadendron giganteum HOM05D006025 ORTHO05D008547 2.9e-73 279.6 199 70.4
Zm00001eb212770 Zea mays HOM05D006025 ORTHO05D008547 1.8e-70 270.4 199 66.3
AagrBONN_evm.TU.Sc2ySwM_117.678 Anthoceros agrestis HOM05D006025 ORTHO05D008547 1.0e-62 244.6 292 48.6
Mapoly0001s0092 Marchantia polymorpha HOM05D006025 ORTHO05D008547 3.9e-62 242.7 262 49.6
SMO147G0037 Selaginella moellendorffii HOM05D006025 ORTHO05D008547 7.0e-59 231.9 194 57.7
CBR_g39595 Chara braunii HOM05D006025 ORTHO05D008547 3.5e-58 229.6 206 54.4
HPP92_018837 Vanilla planifolia HOM05D006025 ORTHO05D008547 3.9e-54 216.1 149 71.8
Pp3c22_2360 Physcomitrium patens HOM05D006025 ORTHO05D008547 6.7e-54 215.3 198 55.1
CDE07G0470 Ceratophyllum demersum HOM05D006025 ORTHO05D008547 6.3e-52 208.8 273 47.6
CDE06G2488 Ceratophyllum demersum HOM05D006025 ORTHO05D008547 1.8e-35 154.1 179 48.6
SEGI_34054 Sequoiadendron giganteum HOM05D006025 ORTHO05D008547 5.4e-35 152.5 123 65.0
Solyc05g006965.1 Solanum lycopersicum HOM05D006025 ORTHO05D008547 2.4e-27 127.1 180 42.8
Hma1.2p1_0808F.1_g221580 Hydrangea macrophylla HOM05D006025 ORTHO05D008547 5.4e-19 99.4 74 60.8
Hma1.2p1_0513F.1_g169540 Hydrangea macrophylla HOM05D006025 ORTHO05D008547 1.6e-18 97.8 74 62.2
DCAR_001229 Daucus carota HOM05D006025 ORTHO05D008547 1.1e-11 75.1 50 74.0
Zm00001eb151370 Zea mays HOM05D006025 ORTHO05D443914 1.0e-09 68.6 54 64.8
Dinv16285 Davidia involucrata HOM05D000027 ORTHO05D000500 9.5e-08 62.0 108 43.5


User provided reference genes

Program Settings