Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G080300 Phaseolus vulgaris HOM05D004011 ORTHO05D005290 5.1e-276 953.7 469 100.0
VMungo1215G2281 Vigna mungo HOM05D004011 ORTHO05D005290 6.5e-255 883.6 469 91.9
Glyma.01G040300 Glycine max HOM05D004011 ORTHO05D005290 4.5e-240 834.3 469 87.6
Glyma.02G024500 Glycine max HOM05D004011 ORTHO05D005290 4.7e-229 797.7 444 88.1
Lj2g0011655 Lotus japonicus HOM05D004011 ORTHO05D005290 7.8e-216 753.8 466 77.9
Lalb_Chr09g0326751 Lupinus albus HOM05D004011 ORTHO05D005290 1.5e-214 749.6 468 76.3
Medtr5g037400 Medicago truncatula HOM05D004011 ORTHO05D005290 1.6e-208 729.6 469 75.5
Psat2g115960 Pisum sativum HOM05D004011 ORTHO05D005290 1.6e-208 729.6 469 76.1
TPR.G26722 Trifolium pratense HOM05D004011 ORTHO05D005290 9.5e-206 720.3 472 75.2
Ca_04688_v3 Cicer arietinum L. HOM05D004011 ORTHO05D005290 2.3e-204 715.7 468 74.4
arahy.Tifrunner.gnm1.ann1.XM7912 Arachis hypogaea HOM05D004011 ORTHO05D005290 8.1e-197 690.6 472 69.9
QL03p066429 Quercus lobata HOM05D004011 ORTHO05D005290 3.7e-194 681.8 465 71.4
CiPaw.05G142000 Carya illinoinensis HOM05D004011 ORTHO05D005290 5.4e-193 677.9 467 69.6
Duzib251G0283 Durio zibethinus HOM05D004011 ORTHO05D005290 1.1e-188 663.7 467 67.5
Thecc.02G234800 Theobroma cacao HOM05D004011 ORTHO05D005290 2.4e-188 662.5 467 68.3
Potri.010G035400 Populus trichocarpa HOM05D004011 ORTHO05D005290 4.9e-186 654.8 468 67.5
Prupe.1G265000 Prunus persica HOM05D004011 ORTHO05D005290 1.1e-185 653.7 467 67.9
RcHm_v2.0_Chr4g0445221 Rosa chinensis HOM05D004011 ORTHO05D005290 1.9e-185 652.9 465 67.7
GSVIVG01020097001 Vitis vinifera HOM05D004011 ORTHO05D005290 9.2e-185 650.6 469 67.0
Manes.01G192600 Manihot esculenta HOM05D004011 ORTHO05D005290 4.6e-184 648.3 467 66.6
CANSAT01G0183 Cannabis sativa HOM05D004011 ORTHO05D005290 7.8e-184 647.5 469 66.1
COL.COLO4_36215 Corchorus olitorius HOM05D004011 ORTHO05D005290 1.3e-183 646.7 465 66.2
CSS0048676 Camellia sinensis var. sinensis HOM05D004011 ORTHO05D005290 6.6e-183 644.4 463 66.5
TAR622G0281 Trochodendron aralioides HOM05D004011 ORTHO05D005290 6.6e-183 644.4 465 66.0
FAN07G2799 Fragaria x ananassa HOM05D004011 ORTHO05D005290 5.6e-182 641.3 465 66.2
Gohir.D01G133600 Gossypium hirsutum HOM05D004011 ORTHO05D005290 5.6e-182 641.3 467 64.9
Actinidia19850 Actinidia chinensis HOM05D004011 ORTHO05D005290 1.6e-181 639.8 469 66.3
Gorai.002G165100 Gossypium raimondii HOM05D004011 ORTHO05D005290 1.8e-180 636.3 471 64.3
FvH4_4g35610 Fragaria vesca HOM05D004011 ORTHO05D005290 2.4e-180 636.0 465 66.0
Cfa009061 Carpinus fangiana HOM05D004011 ORTHO05D005290 5.3e-180 634.8 467 66.6
FAN22G2312 Fragaria x ananassa HOM05D004011 ORTHO05D005290 6.9e-180 634.4 465 65.8
FAN12G0945 Fragaria x ananassa HOM05D004011 ORTHO05D005290 9.0e-180 634.0 465 65.8
MD16G1081000 Malus domestica HOM05D004011 ORTHO05D005290 1.2e-179 633.6 468 66.2
Ciclev10031073m.g Citrus clementina HOM05D004011 ORTHO05D005290 2.0e-179 632.9 449 65.7
Lj3C1043T17 Lonicera japonica HOM05D004011 ORTHO05D005290 1.3e-178 630.2 465 64.7
FAN17G1440 Fragaria x ananassa HOM05D004011 ORTHO05D005290 1.7e-178 629.8 469 64.8
MELO3C012048.2 Cucumis melo HOM05D004011 ORTHO05D005290 6.4e-178 627.9 470 64.5
Nitab4.5_0001726g0090 Nicotiana tabacum HOM05D004011 ORTHO05D005290 1.4e-177 626.7 467 63.4
Nitab4.5_0000408g0060 Nicotiana tabacum HOM05D004011 ORTHO05D005290 2.4e-177 625.9 467 63.4
Eucgr.B03399 Eucalyptus grandis HOM05D004011 ORTHO05D005290 4.2e-177 625.2 467 64.0
CsaV3_5G032130 Cucumis sativus L. HOM05D004011 ORTHO05D005290 5.4e-177 624.8 470 64.7
Sabra10G0029400 Salix brachista HOM05D004011 ORTHO05D005290 5.4e-177 624.8 488 63.3
CAN.G27.36 Capsicum annuum HOM05D004011 ORTHO05D005290 1.2e-176 623.6 467 63.2
TWI36G1736 Tripterygium wilfordii HOM05D004011 ORTHO05D005290 1.2e-176 623.6 468 63.7
ClCG05G024760 Citrullus lanatus HOM05D004011 ORTHO05D005290 2.1e-176 622.9 470 64.5
Gohir.A01G142100 Gossypium hirsutum HOM05D004011 ORTHO05D005290 3.9e-175 618.6 439 65.8
Cc11_g13670 Coffea canephora HOM05D004011 ORTHO05D005290 1.8e-172 609.8 467 64.0
Sopen05g002700 Solanum pennellii HOM05D004011 ORTHO05D005290 1.8e-172 609.8 468 62.0
Lsat_1_v5_gn_8_163421 Lactuca sativa HOM05D004011 ORTHO05D005290 4.0e-172 608.6 468 63.2
Solyc05g006760.4 Solanum lycopersicum HOM05D004011 ORTHO05D005290 6.9e-172 607.8 468 62.2
Sed0020834 Sechium edule HOM05D004011 ORTHO05D005290 4.5e-171 605.1 468 62.8
Aqoxy3G03233 Aquilegia oxysepala HOM05D004011 ORTHO05D005290 1.7e-170 603.2 463 62.4
Oeu028543.1 Olea europaea HOM05D004011 ORTHO05D005290 4.6e-168 595.1 469 61.2
EL10Ac6g13125 Beta vulgaris HOM05D004011 ORTHO05D005290 3.0e-167 592.4 468 60.5
Migut.L01360 Erythranthe guttata HOM05D004011 ORTHO05D005290 3.0e-167 592.4 476 60.9
Atru.chr11.1880 Acer truncatum HOM05D004011 ORTHO05D005290 3.3e-166 589.0 418 66.0
Hund05926 Selenicereus undatus HOM05D004011 ORTHO05D005290 5.6e-166 588.2 467 60.0
HanXRQChr12g0371081 Helianthus annuus HOM05D004011 ORTHO05D005290 7.4e-166 587.8 462 62.3
Cc11_g13690 Coffea canephora HOM05D004011 ORTHO05D005290 2.1e-165 586.3 440 64.8
arahy.Tifrunner.gnm1.ann1.SQ07EG Arachis hypogaea HOM05D004011 ORTHO05D005290 5.3e-164 581.6 494 60.1
AUR62026479 Chenopodium quinoa HOM05D004011 ORTHO05D005290 5.3e-164 581.6 468 59.2
arahy.Tifrunner.gnm1.ann1.DHW1RD Arachis hypogaea HOM05D004011 ORTHO05D005290 1.2e-163 580.5 472 60.8
CDE06G1386 Ceratophyllum demersum HOM05D004011 ORTHO05D005290 1.5e-163 580.1 458 60.7
BraA09t39549Z Brassica rapa HOM05D004011 ORTHO05D005290 7.6e-163 577.8 468 59.8
BcaB03g14114 Brassica carinata HOM05D004011 ORTHO05D005290 2.2e-162 576.2 469 60.1
Carub.0001s2380 Capsella rubella HOM05D004011 ORTHO05D005290 8.4e-162 574.3 467 59.1
AL1G38330 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 1.1e-161 573.9 468 59.0
AT1G27150 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 3.2e-161 572.4 468 59.0
A09p40530 Brassica napus HOM05D004011 ORTHO05D005290 3.2e-161 572.4 468 59.6
Aa31LG7G8050 Aethionema arabicum HOM05D004011 ORTHO05D005290 9.3e-161 570.9 468 59.0
BcaC05g26340 Brassica carinata HOM05D004011 ORTHO05D005290 2.1e-160 569.7 468 59.2
Thhalv10007555m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 6.0e-160 568.2 467 59.1
BraA07t29109Z Brassica rapa HOM05D004011 ORTHO05D005290 6.7e-159 564.7 471 59.7
A07p13510 Brassica napus HOM05D004011 ORTHO05D005290 8.7e-159 564.3 469 59.7
PGSC0003DMG400022621 Solanum tuberosum HOM05D004011 ORTHO05D005290 1.1e-158 563.9 468 59.2
BcaC06g35087 Brassica carinata HOM05D004011 ORTHO05D005290 1.9e-158 563.1 469 59.3
ECA248G0235 Erigeron canadensis HOM05D004011 ORTHO05D005290 7.4e-158 561.2 467 59.3
Peaxi162Scf00209g00842 Petunia axillaris HOM05D004011 ORTHO05D005290 2.1e-157 559.7 420 62.9
Sp1g21670 Schrenkiella parvula HOM05D004011 ORTHO05D005290 2.1e-157 559.7 459 58.8
C07p20000 Brassica napus HOM05D004011 ORTHO05D005290 2.8e-157 559.3 469 58.8
BolC7t42519H Brassica oleracea HOM05D004011 ORTHO05D005290 2.8e-157 559.3 469 58.8
BraA08t34710Z Brassica rapa HOM05D004011 ORTHO05D005290 3.7e-157 558.9 459 57.7
BcaB03g11978 Brassica carinata HOM05D004011 ORTHO05D005290 6.2e-157 558.1 459 58.4
A07p13370 Brassica napus HOM05D004011 ORTHO05D005290 1.4e-156 557.0 469 58.6
BolC8t49891H Brassica oleracea HOM05D004011 ORTHO05D005290 2.4e-156 556.2 459 58.0
Sp1g21620 Schrenkiella parvula HOM05D004011 ORTHO05D005290 6.9e-156 554.7 469 58.6
BcaC07g39250 Brassica carinata HOM05D004011 ORTHO05D005290 3.4e-155 552.4 459 57.3
CARHR024790 Cardamine hirsuta HOM05D004011 ORTHO05D005290 5.8e-155 551.6 458 57.9
THA.LOC104822089 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 2.9e-154 549.3 467 56.1
ATR0001G025 Amborella trichopoda HOM05D004011 ORTHO05D005290 1.1e-153 547.4 439 59.0
CARHR024720 Cardamine hirsuta HOM05D004011 ORTHO05D005290 2.5e-153 546.2 467 57.0
SalBow2G3145 Salvia bowleyana HOM05D004011 ORTHO05D005290 7.1e-153 544.7 469 58.4
THA.LOC104822935 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 5.1e-151 538.5 459 57.3
Os03g0689900 Oryza sativa ssp. japonica HOM05D004011 ORTHO05D005290 1.9e-150 536.6 467 55.2
C08p22550 Brassica napus HOM05D004011 ORTHO05D005290 2.5e-150 536.2 435 58.2
Nn3g17098 Nelumbo nucifera HOM05D004011 ORTHO05D005290 2.5e-150 536.2 466 57.1
unitig_22.g6920 Utricularia gibba HOM05D004011 ORTHO05D005290 1.3e-149 533.9 467 55.7
BcaB07g32390 Brassica carinata HOM05D004011 ORTHO05D005290 3.7e-149 532.3 467 56.7
A08p27740 Brassica napus HOM05D004011 ORTHO05D005290 4.8e-149 531.9 431 58.5
Haze_12040 Corylus avellana HOM05D004011 ORTHO05D005290 1.1e-148 530.8 489 57.3
PSO782G5642 Papaver somniferum HOM05D004011 ORTHO05D005290 9.0e-148 527.7 465 55.1
DCAR_031068 Daucus carota HOM05D004011 ORTHO05D005290 5.0e-146 521.9 436 58.9
BcaB03g14111 Brassica carinata HOM05D004011 ORTHO05D005290 1.1e-145 520.8 484 54.3
AT1G27110 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 1.4e-145 520.4 469 56.1
BolC5t31078H Brassica oleracea HOM05D004011 ORTHO05D005290 6.1e-144 515.0 468 55.6
C05p23640 Brassica napus HOM05D004011 ORTHO05D005290 5.1e-143 511.9 441 56.7
PSO423G0236 Papaver somniferum HOM05D004011 ORTHO05D005290 7.4e-142 508.1 463 55.5
Carub.0001s2386 Capsella rubella HOM05D004011 ORTHO05D005290 8.2e-141 504.6 437 55.8
Zm00001eb053520 Zea mays HOM05D004011 ORTHO05D005290 8.2e-141 504.6 459 53.8
vmacro01220 Vaccinium macrocarpon HOM05D004011 ORTHO05D005290 1.8e-140 503.4 344 71.2
Cpa.g.sc5.292 Carica papaya HOM05D004011 ORTHO05D005290 6.9e-140 501.5 467 56.7
MBI01_g01221_MAGBIO Magnolia biondii HOM05D004011 ORTHO05D005290 1.1e-137 494.2 423 57.2
BcaC07g37560 Brassica carinata HOM05D004011 ORTHO05D005290 3.2e-137 492.7 445 55.3
BolC8t47901H Brassica oleracea HOM05D004011 ORTHO05D005290 9.7e-134 481.1 468 52.8
BolC5t31073H Brassica oleracea HOM05D004011 ORTHO05D005290 1.8e-132 476.9 388 59.0
Sc11g0001560 Simmondsia chinensis HOM05D004011 ORTHO05D005290 3.1e-132 476.1 360 62.2
Thhalv10007979m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 4.4e-126 455.7 364 59.1
SGA_v2.0_scaffold166G38295 Striga asiatica HOM05D004011 ORTHO05D005290 5.5e-121 438.7 508 47.4
A08p08630 Brassica napus HOM05D004011 ORTHO05D005290 3.4e-118 429.5 446 51.1
Hma1.2p1_1045F.1_g251340 Hydrangea macrophylla HOM05D004011 ORTHO05D005290 4.4e-118 429.1 459 50.1
AUR62026286 Chenopodium quinoa HOM05D004011 ORTHO05D005290 2.5e-113 413.3 502 44.6
Pp3c17_17430 Physcomitrium patens HOM05D004011 ORTHO05D005290 2.8e-96 356.7 464 42.9
arahy.Tifrunner.gnm1.ann1.NNWV08 Arachis hypogaea HOM05D004011 ORTHO05D005290 1.7e-82 310.8 262 58.8
SMO331G0048 Selaginella moellendorffii HOM05D004011 ORTHO05D005290 2.8e-80 303.5 405 41.7
Atru.chr9.2355 Acer truncatum HOM05D004011 ORTHO05D005290 3.1e-79 300.1 241 63.5
Mapoly0042s0014 Marchantia polymorpha HOM05D004011 ORTHO05D005290 4.1e-76 289.7 436 38.5
Actinidia08203 Actinidia chinensis HOM05D004011 ORTHO05D005290 3.6e-72 276.6 190 68.9
Atru.chr5.3340 Acer truncatum HOM05D004011 ORTHO05D005290 5.8e-70 269.2 199 66.8
Atru.chr1.621 Acer truncatum HOM05D004011 ORTHO05D005290 4.9e-69 266.2 199 65.8
Actinidia08204 Actinidia chinensis HOM05D004011 ORTHO05D005290 6.4e-69 265.8 201 63.2
Medtr5g037420 Medicago truncatula HOM05D004011 ORTHO05D005290 5.4e-60 236.1 148 73.6
BraA08t32877Z Brassica rapa HOM05D004011 ORTHO05D005290 7.1e-60 235.7 223 53.8
C05p23600 Brassica napus HOM05D004011 ORTHO05D005290 3.3e-49 200.3 315 39.4
BolC7t42515H Brassica oleracea HOM05D004011 ORTHO05D005290 8.1e-48 195.7 220 49.1
C07p19960 Brassica napus HOM05D004011 ORTHO05D005290 2.0e-46 191.0 219 47.9
A07p13340 Brassica napus HOM05D004011 ORTHO05D005290 2.6e-46 190.7 416 32.9
TPR.G21863 Trifolium pratense HOM05D004011 ORTHO05D005290 1.8e-42 177.9 110 71.8
Atru.chr10.818 Acer truncatum HOM05D004011 ORTHO05D005290 1.2e-35 155.2 156 49.4
BcaC06g35090 Brassica carinata HOM05D004011 ORTHO05D005290 3.7e-32 143.7 178 46.1
TAR636G0334 Trochodendron aralioides HOM05D004011 ORTHO05D005290 1.5e-30 138.3 84 77.4
AL1G38380 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 4.2e-28 130.2 115 55.7
AL1G38370 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 1.6e-27 128.3 114 58.8
Atru.chr2.3843 Acer truncatum HOM05D004011 ORTHO05D005290 1.0e-26 125.6 76 67.1
BraA07t29105Z Brassica rapa HOM05D004011 ORTHO05D005290 8.8e-26 122.5 132 44.7
BcaC06g35091 Brassica carinata HOM05D004011 ORTHO05D005290 4.3e-25 120.2 213 35.7
BolC5t31071H Brassica oleracea HOM05D004011 ORTHO05D005290 1.2e-22 112.1 144 43.1
Duzib268G0988 Durio zibethinus HOM05D004011 ORTHO05D005290 1.2e-22 112.1 90 58.9
Cfa021096 Carpinus fangiana HOM05D004011 ORTHO05D000073 5.9e-22 109.8 93 64.5
BolC5t31081H Brassica oleracea HOM05D004011 ORTHO05D005290 2.2e-21 107.8 144 41.7
BcaB07g32391 Brassica carinata HOM05D026641 ORTHO05D027156 3.8e-21 107.1 102 52.0
BolC7t42512H Brassica oleracea HOM05D004011 ORTHO05D005290 8.5e-21 105.9 146 43.8
BolC5t31070H Brassica oleracea HOM05D004011 ORTHO05D005290 2.5e-20 104.4 76 59.2
BolC7t42514H Brassica oleracea HOM05D004011 ORTHO05D005290 3.2e-20 104.0 169 37.9
BolC5t31079H Brassica oleracea HOM05D004011 ORTHO05D005290 4.2e-20 103.6 76 59.2
C07p19930 Brassica napus HOM05D004011 ORTHO05D005290 1.2e-19 102.1 144 43.8
BcaB04g18716 Brassica carinata HOM05D000040 ORTHO05D005442 6.1e-19 99.8 81 60.5
Cc11_g13680 Coffea canephora HOM05D004011 ORTHO05D005290 3.3e-17 94.0 80 52.5
BolC5t31074H Brassica oleracea HOM05D004011 ORTHO05D005290 9.7e-17 92.4 64 60.9
RcHm_v2.0_Chr7g0206221 Rosa chinensis HOM05D004011 ORTHO05D005290 9.7e-17 92.4 54 68.5
Atru.chr1.3881 Acer truncatum HOM05D004011 ORTHO05D023183 1.7e-16 91.7 56 73.2
SEGI_16255 Sequoiadendron giganteum HOM05D004011 ORTHO05D005290 3.1e-15 87.4 121 43.0
C07p19950 Brassica napus HOM05D004011 ORTHO05D005290 4.1e-15 87.0 173 36.4
AL2G16820 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 2.5e-12 77.8 56 58.9
A07p13320 Brassica napus HOM05D004011 ORTHO05D005290 8.8e-10 69.3 64 51.6
SMO252G0024 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 3.3e-09 67.4 177 28.2
A07p13600 Brassica napus HOM05D004011 ORTHO05D100703 7.5e-09 66.2 64 46.9
SMO203G0050 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 2.8e-08 64.3 177 29.4
CAN.G1697.3 Capsicum annuum HOM05D013442 ORTHO05D016868 4.8e-08 63.5 68 45.6
SMO110G0005 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 6.3e-08 63.2 176 28.4
BraA07t29103Z Brassica rapa HOM05D001102 ORTHO05D021602 1.8e-07 61.6 40 65.0
Nitab4.5_0002852g0030 Nicotiana tabacum HOM05D001347 ORTHO05D001198 1.2e-06 58.9 47 53.2


User provided reference genes

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