Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G079500 Phaseolus vulgaris HOM05D007593 ORTHO05D009686 4.5e-156 554.7 305 100.0
Glyma.02G025300 Glycine max HOM05D007593 ORTHO05D009686 5.0e-131 471.5 302 85.8
Glyma.01G039400 Glycine max HOM05D007593 ORTHO05D009686 2.5e-122 442.6 302 81.5
VMungo1215G1938 Vigna mungo HOM05D007593 ORTHO05D009686 1.9e-114 416.4 303 78.9
Psat2g115200 Pisum sativum HOM05D007593 ORTHO05D009686 6.4e-94 348.2 278 70.9
Thecc.02G236500 Theobroma cacao HOM05D007593 ORTHO05D009686 3.2e-93 345.9 302 63.6
Duzib268G1169 Durio zibethinus HOM05D007593 ORTHO05D009686 1.1e-88 330.9 295 62.4
Medtr5g037260 Medicago truncatula HOM05D007593 ORTHO05D009686 6.8e-88 328.2 315 63.2
Prupe.1G263900 Prunus persica HOM05D007593 ORTHO05D009686 9.9e-87 324.3 302 59.6
Atru.chr11.1889 Acer truncatum HOM05D007593 ORTHO05D009686 1.3e-86 323.9 302 59.6
QL03p066681 Quercus lobata HOM05D007593 ORTHO05D009686 4.6e-84 315.5 339 57.5
Potri.008G190600 Populus trichocarpa HOM05D007593 ORTHO05D009686 6.0e-84 315.1 288 62.5
Manes.01G193300 Manihot esculenta HOM05D007593 ORTHO05D009686 7.8e-84 314.7 292 59.9
MD13G1083000 Malus domestica HOM05D007593 ORTHO05D009686 2.3e-83 313.2 317 57.7
PGR102G2137 Punica granatum HOM05D007593 ORTHO05D009686 8.6e-83 311.2 306 56.2
Lj2g0003805 Lotus japonicus HOM05D007593 ORTHO05D009686 2.5e-82 309.7 302 61.9
TWI75G0370 Tripterygium wilfordii HOM05D007593 ORTHO05D009686 7.3e-82 308.1 289 59.5
CiPaw.06G078500 Carya illinoinensis HOM05D007593 ORTHO05D009686 2.0e-79 300.1 291 59.8
AL1G21190 Arabidopsis lyrata HOM05D007593 ORTHO05D009686 8.7e-75 284.6 287 57.1
FvH4_4g35470 Fragaria vesca HOM05D007593 ORTHO05D009686 8.7e-75 284.6 313 54.6
arahy.Tifrunner.gnm1.ann1.M4LE0B Arachis hypogaea HOM05D007593 ORTHO05D009686 8.1e-73 278.1 302 56.6
AUR62026494 Chenopodium quinoa HOM05D007593 ORTHO05D009686 1.4e-72 277.3 292 55.1
A06p07060 Brassica napus HOM05D007593 ORTHO05D009686 4.0e-72 275.8 318 52.8
Aqoxy3G00839 Aquilegia oxysepala HOM05D007593 ORTHO05D009686 6.9e-72 275.0 298 53.0
Nn3g17072 Nelumbo nucifera HOM05D007593 ORTHO05D009686 6.9e-72 275.0 292 52.7
BolC5t29606H Brassica oleracea HOM05D007593 ORTHO05D009686 2.6e-71 273.1 320 51.9
BcaC05g24886 Brassica carinata HOM05D007593 ORTHO05D009686 5.8e-71 271.9 320 51.9
Carub.0001s0986 Capsella rubella HOM05D007593 ORTHO05D009686 5.8e-71 271.9 287 54.7
PSO161G0019 Papaver somniferum HOM05D007593 ORTHO05D009686 7.6e-71 271.6 292 51.7
AT1G10417 Arabidopsis thaliana HOM05D007593 ORTHO05D009686 5.4e-69 265.4 287 54.4
AUR62026300 Chenopodium quinoa HOM05D007593 ORTHO05D009686 1.6e-68 263.8 277 54.9
Sabra08G0144600 Salix brachista HOM05D007593 ORTHO05D009686 1.0e-67 261.2 304 53.0
FAN07G2090 Fragaria x ananassa HOM05D007593 ORTHO05D009686 2.3e-67 260.0 297 52.2
Gohir.A05G320500 Gossypium hirsutum HOM05D007593 ORTHO05D009686 2.3e-67 260.0 302 51.0
FAN17G2874 Fragaria x ananassa HOM05D007593 ORTHO05D009686 3.3e-66 256.1 302 50.0
C05p08550 Brassica napus HOM05D007593 ORTHO05D009686 4.3e-66 255.8 351 47.3
Gorai.009G346400 Gossypium raimondii HOM05D007593 ORTHO05D009686 5.6e-66 255.4 339 47.5
Gohir.D05G322700 Gossypium hirsutum HOM05D007593 ORTHO05D009686 3.7e-65 252.7 339 47.2
Sabra11G0071700 Salix brachista HOM05D007593 ORTHO05D009686 3.7e-65 252.7 304 52.0
Sabra11G0071900 Salix brachista HOM05D007593 ORTHO05D009686 3.7e-65 252.7 322 50.6
Cpa.g.sc5.302 Carica papaya HOM05D007593 ORTHO05D009686 2.4e-64 250.0 250 56.8
FAN12G3835 Fragaria x ananassa HOM05D007593 ORTHO05D009686 5.3e-64 248.8 231 58.9
FAN12G2740 Fragaria x ananassa HOM05D007593 ORTHO05D009686 1.2e-63 247.7 311 50.2
Thhalv10007877m.g Eutrema salsugineum HOM05D007593 ORTHO05D009686 1.1e-61 241.1 299 51.2
FAN22G1720 Fragaria x ananassa HOM05D007593 ORTHO05D009686 5.5e-61 238.8 303 49.2
Sc04g0008660 Simmondsia chinensis HOM05D007593 ORTHO05D009686 7.1e-61 238.4 237 56.5
EL10Ac6g13115 Beta vulgaris HOM05D007593 ORTHO05D009686 1.8e-59 233.8 335 45.1
BraA06t23921Z Brassica rapa HOM05D007593 ORTHO05D009686 1.8e-59 233.8 303 48.5
Ca_04684_v3 Cicer arietinum L. HOM05D007593 ORTHO05D009686 2.1e-57 226.9 167 76.6
COL.COLO4_36239 Corchorus olitorius HOM05D007593 ORTHO05D009686 4.8e-57 225.7 295 48.8
Nitab4.5_0002542g0050 Nicotiana tabacum HOM05D007593 ORTHO05D009686 1.4e-53 214.2 292 45.9
Haze_12082 Corylus avellana HOM05D007593 ORTHO05D009686 2.5e-53 213.4 301 48.2
Hma1.2p1_0289F.1_g114430 Hydrangea macrophylla HOM05D007593 ORTHO05D009686 4.2e-53 212.6 292 46.9
RcHm_v2.0_Chr4g0445111 Rosa chinensis HOM05D007593 ORTHO05D009686 5.5e-53 212.2 235 52.8
CARHR010560 Cardamine hirsuta HOM05D007593 ORTHO05D009686 9.3e-53 211.5 299 46.8
CANSAT07G0001 Cannabis sativa HOM05D007593 ORTHO05D009686 1.0e-51 208.0 358 40.8
Actinidia01171 Actinidia chinensis HOM05D007593 ORTHO05D009686 3.0e-51 206.5 292 47.9
ECA233G4970 Erigeron canadensis HOM05D007593 ORTHO05D009686 4.3e-50 202.6 243 44.0
Lsat_1_v5_gn_8_160680 Lactuca sativa HOM05D007593 ORTHO05D009686 3.7e-49 199.5 252 47.2
BcaC05g24925 Brassica carinata HOM05D007593 ORTHO05D009686 6.3e-49 198.7 309 43.0
Ciclev10032856m.g Citrus clementina HOM05D007593 ORTHO05D009686 8.5e-46 188.3 167 64.1
GSVIVG01020118001 Vitis vinifera HOM05D007593 ORTHO05D009686 1.4e-45 187.6 167 61.7
TAR629G1096 Trochodendron aralioides HOM05D007593 ORTHO05D009686 8.7e-43 178.3 155 67.1
Nitab4.5_0000791g0030 Nicotiana tabacum HOM05D007593 ORTHO05D009686 5.7e-42 175.6 292 40.8
TPR.G26746 Trifolium pratense HOM05D007593 ORTHO05D009686 2.4e-40 170.2 301 42.5
HanXRQChr12g0371131 Helianthus annuus HOM05D007593 ORTHO05D009686 5.5e-37 159.1 188 48.9
BcaC05g24887 Brassica carinata HOM05D007593 ORTHO05D009686 1.2e-36 157.9 237 44.7
Rhsim12G0127800 Rhododendron simsii HOM05D007593 ORTHO05D009686 1.1e-34 151.4 271 41.3
Cc11_g13810 Coffea canephora HOM05D007593 ORTHO05D009686 1.8e-32 144.1 168 50.6
Hund25291 Selenicereus undatus HOM05D007593 ORTHO05D009686 3.1e-32 143.3 109 73.4
Eucgr.B03393 Eucalyptus grandis HOM05D007593 ORTHO05D009686 7.7e-31 138.7 131 57.3
Lalb_Chr05g0217441 Lupinus albus HOM05D007593 ORTHO05D009686 6.5e-30 135.6 125 60.8
DCAR_031078 Daucus carota HOM05D007593 ORTHO05D009686 1.6e-28 131.0 189 38.1
Lalb_Chr05g0217431 Lupinus albus HOM05D007593 ORTHO05D009686 2.1e-28 130.6 111 69.4
CAN.G27.56 Capsicum annuum HOM05D007593 ORTHO05D009686 1.8e-27 127.5 268 34.0
vmacro16309 Vaccinium macrocarpon HOM05D007593 ORTHO05D009686 6.7e-27 125.6 221 36.7
Zm00001eb223170 Zea mays HOM05D007593 ORTHO05D009686 6.3e-25 119.0 177 37.9
CDE07G1947 Ceratophyllum demersum HOM05D007593 ORTHO05D009686 5.9e-15 85.9 138 37.0
Mapoly0067s0009 Marchantia polymorpha HOM05D007593 ORTHO05D009686 1.7e-14 84.3 262 25.2
SMO174G0259 Selaginella moellendorffii HOM05D003005 ORTHO05D021244 1.7e-14 84.3 284 25.4
RcHm_v2.0_Chr4g0445121 Rosa chinensis HOM05D007593 ORTHO05D009686 1.6e-12 77.8 70 58.6
Sabra15G0067100 Salix brachista HOM05D007593 ORTHO05D009686 3.6e-12 76.6 73 65.8
arahy.Tifrunner.gnm1.ann1.YHM9KM Arachis hypogaea HOM05D007593 ORTHO05D009686 8.0e-12 75.5 275 30.5
CSS0023539 Camellia sinensis var. sinensis HOM05D007593 ORTHO05D009686 9.8e-10 68.6 137 40.9
Ciclev10033560m.g Citrus clementina HOM05D007593 ORTHO05D009686 1.7e-09 67.8 95 44.2
Sp1g09040 Schrenkiella parvula HOM05D007593 ORTHO05D009686 8.3e-09 65.5 233 30.0
Peaxi162Scf00209g00948 Petunia axillaris HOM05D007593 ORTHO05D009686 2.7e-07 60.5 91 42.9
AagrBONN_evm.TU.Sc2ySwM_228.4242 Anthoceros agrestis HOM05D007593 ORTHO05D009686 5.9e-07 59.3 185 23.2
TAR629G0814 Trochodendron aralioides HOM05D007593 ORTHO05D009686 5.0e-06 56.2 59 49.2


User provided reference genes

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