Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G075400 Phaseolus vulgaris HOM05D006250 ORTHO05D007107 7.1e-172 608.2 634 100.0
Glyma.01G036200 Glycine max HOM05D006250 ORTHO05D007107 9.8e-121 438.3 634 86.8
Glyma.02G029800 Glycine max HOM05D006250 ORTHO05D007107 1.5e-116 424.5 634 87.1
VMungo0720G1586 Vigna mungo HOM05D006250 ORTHO05D007107 2.1e-115 420.6 634 87.1
VMungo1215G1343 Vigna mungo HOM05D006250 ORTHO05D007107 9.8e-105 385.2 621 85.5
arahy.Tifrunner.gnm1.ann1.11GRU6 Arachis hypogaea HOM05D006250 ORTHO05D007107 2.1e-91 340.9 633 75.2
arahy.Tifrunner.gnm1.ann1.ST0DQ2 Arachis hypogaea HOM05D006250 ORTHO05D007107 1.4e-90 338.2 633 75.0
Lalb_Chr09g0326521 Lupinus albus HOM05D006250 ORTHO05D007107 3.0e-85 320.5 634 76.0
Psat4g140960 Pisum sativum HOM05D006250 ORTHO05D007107 3.4e-81 307.0 239 73.6
Lj2g0015976 Lotus japonicus HOM05D006250 ORTHO05D007107 9.6e-76 288.9 634 75.4
Medtr5g035590 Medicago truncatula HOM05D006250 ORTHO05D007107 2.1e-75 287.7 237 73.0
TPR.G13515 Trifolium pratense HOM05D006250 ORTHO05D007107 3.1e-74 283.9 581 79.0
Haze_12133 Corylus avellana HOM05D006250 ORTHO05D007107 1.2e-73 282.0 644 71.0
Ca_18091_v3 Cicer arietinum L. HOM05D006250 ORTHO05D007107 3.4e-73 280.4 233 70.8
COL.COLO4_19523 Corchorus olitorius HOM05D006250 ORTHO05D007107 2.3e-69 267.7 633 72.0
Thecc.02G242000 Theobroma cacao HOM05D006250 ORTHO05D007107 7.3e-68 262.7 636 71.5
Ciclev10031015m.g Citrus clementina HOM05D006250 ORTHO05D007107 2.1e-67 261.2 635 70.4
QL03p066863 Quercus lobata HOM05D006250 ORTHO05D007107 2.0e-65 254.6 638 70.5
Atru.chr11.1955 Acer truncatum HOM05D006250 ORTHO05D007107 9.9e-65 252.3 620 62.9
Hma1.2p1_1049F.1_g251780 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 2.9e-64 250.8 235 62.6
Hma1.2p1_2649F.1_g326135 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 2.9e-64 250.8 235 62.6
Nn3g16985 Nelumbo nucifera HOM05D006250 ORTHO05D007107 3.8e-64 250.4 639 65.7
Dinv31115 Davidia involucrata HOM05D006250 ORTHO05D007107 8.4e-64 249.2 250 61.2
CiPaw.05G146100 Carya illinoinensis HOM05D006250 ORTHO05D007107 1.4e-63 248.4 642 70.1
Gohir.A05G319200 Gossypium hirsutum HOM05D006250 ORTHO05D007107 7.1e-63 246.1 634 71.0
MD16G1085800 Malus domestica HOM05D006250 ORTHO05D007107 6.0e-62 243.0 239 59.4
Cc11_g14200 Coffea canephora HOM05D006250 ORTHO05D007107 1.0e-61 242.3 645 69.0
Gorai.009G344900 Gossypium raimondii HOM05D006250 ORTHO05D007107 1.0e-61 242.3 636 70.9
Gohir.D05G321400 Gossypium hirsutum HOM05D006250 ORTHO05D007107 3.0e-61 240.7 636 70.8
FAN12G0989 Fragaria x ananassa HOM05D006250 ORTHO05D007107 1.9e-60 238.0 641 68.5
GSVIVG01020179001 Vitis vinifera HOM05D006250 ORTHO05D007107 2.5e-60 237.7 654 67.0
Potri.008G193700 Populus trichocarpa HOM05D006250 ORTHO05D007107 2.4e-58 231.1 633 69.8
TWI18G0037 Tripterygium wilfordii HOM05D006250 ORTHO05D007107 2.4e-58 231.1 640 68.4
Migut.L01451 Erythranthe guttata HOM05D006250 ORTHO05D007107 3.1e-58 230.7 425 69.6
Prupe.1G260300 Prunus persica HOM05D006250 ORTHO05D007107 3.1e-58 230.7 248 55.2
Eucgr.B03367 Eucalyptus grandis HOM05D006250 ORTHO05D007107 3.4e-57 227.3 247 54.7
Duzib251G0023 Durio zibethinus HOM05D006250 ORTHO05D007107 5.8e-57 226.5 635 68.2
FAN22G2376 Fragaria x ananassa HOM05D006250 ORTHO05D007107 7.6e-57 226.1 641 68.6
MD13G1086400 Malus domestica HOM05D006250 ORTHO05D007107 2.2e-56 224.6 240 55.8
Manes.05G091350 Manihot esculenta HOM05D006250 ORTHO05D007107 2.2e-56 224.6 632 69.3
RcHm_v2.0_Chr4g0444691 Rosa chinensis HOM05D006250 ORTHO05D007107 1.4e-55 221.9 241 56.4
Lsat_1_v5_gn_3_49600 Lactuca sativa HOM05D006250 ORTHO05D007107 5.5e-55 219.9 636 70.0
TAR629G0559 Trochodendron aralioides HOM05D006250 ORTHO05D007107 2.1e-54 218.0 421 68.9
Aa31LG2G10230 Aethionema arabicum HOM05D006250 ORTHO05D007107 2.7e-54 217.6 645 51.2
CDE04G2141 Ceratophyllum demersum HOM05D006250 ORTHO05D007107 2.7e-54 217.6 583 73.9
CANSAT01G1928 Cannabis sativa HOM05D006250 ORTHO05D007107 3.5e-54 217.2 196 64.3
HanXRQChr10g0288221 Helianthus annuus HOM05D006250 ORTHO05D007107 4.6e-54 216.9 243 53.9
MBI18_g16987_MAGBIO Magnolia biondii HOM05D006250 ORTHO05D007107 7.9e-54 216.1 570 74.6
FAN17G0914 Fragaria x ananassa HOM05D006250 ORTHO05D007107 1.3e-53 215.3 652 67.3
FvH4_4g35070 Fragaria vesca HOM05D006250 ORTHO05D007107 3.0e-53 214.2 244 54.5
MSTRG.625 Avicennia marina HOM05D006250 ORTHO05D007107 6.7e-53 213.0 425 66.4
CAN.G1160.10 Capsicum annuum HOM05D006250 ORTHO05D007107 3.3e-52 210.7 237 54.0
SalBow2G3220 Salvia bowleyana HOM05D006250 ORTHO05D007107 7.4e-52 209.5 250 50.0
Sabra08G0147200 Salix brachista HOM05D006250 ORTHO05D007107 1.3e-51 208.8 238 53.8
PSO063G2741 Papaver somniferum HOM05D006250 ORTHO05D007107 3.7e-51 207.2 647 69.1
PSO832G4030 Papaver somniferum HOM05D006250 ORTHO05D007107 3.7e-51 207.2 647 68.9
Sopen05g002190 Solanum pennellii HOM05D000912 ORTHO05D001232 8.1e-51 206.1 244 52.0
PGSC0003DMG400015603 Solanum tuberosum HOM05D006250 ORTHO05D007107 8.1e-51 206.1 242 52.1
Solyc05g006170.4 Solanum lycopersicum HOM05D006250 ORTHO05D007107 1.1e-50 205.7 244 52.0
Lj6A800T42 Lonicera japonica HOM05D006250 ORTHO05D007107 3.1e-50 204.1 655 68.7
Aqoxy3G03090 Aquilegia oxysepala HOM05D006250 ORTHO05D007107 4.5e-49 200.3 644 66.5
ECA246G3811 Erigeron canadensis HOM05D006250 ORTHO05D007107 4.9e-48 196.8 230 50.4
FAN07G1033 Fragaria x ananassa HOM05D006250 ORTHO05D007107 8.4e-48 196.1 263 50.2
Thhalv10007114m.g Eutrema salsugineum HOM05D006250 ORTHO05D007107 1.9e-47 194.9 248 48.8
CARHR010650 Cardamine hirsuta HOM05D006250 ORTHO05D007107 2.5e-47 194.5 181 58.0
THA.LOC104816735 Tarenaya hassleriana HOM05D006250 ORTHO05D007107 4.2e-47 193.7 208 54.3
TAR371G0500 Trochodendron aralioides HOM05D006250 ORTHO05D007107 4.2e-47 193.7 643 56.5
AUR62026573 Chenopodium quinoa HOM05D006250 ORTHO05D007107 5.5e-47 193.4 179 57.5
AUR62039411 Chenopodium quinoa HOM05D006250 ORTHO05D007107 9.3e-47 192.6 179 57.5
BcaC05g24872 Brassica carinata HOM05D006250 ORTHO05D007107 1.2e-46 192.2 194 57.2
C08p13750 Brassica napus HOM05D006250 ORTHO05D007107 2.1e-46 191.4 241 50.6
BolC8t49010H Brassica oleracea HOM05D006250 ORTHO05D007107 3.5e-46 190.7 182 57.7
A06p07280 Brassica napus HOM05D006250 ORTHO05D007107 6.0e-46 189.9 234 50.4
C05p08800 Brassica napus HOM05D006250 ORTHO05D007107 6.0e-46 189.9 192 57.3
BolC5t29626H Brassica oleracea HOM05D006250 ORTHO05D007107 6.0e-46 189.9 192 57.3
BraA06t23934Z Brassica rapa HOM05D006250 ORTHO05D007107 6.0e-46 189.9 234 50.4
BcaC05g24932 Brassica carinata HOM05D006250 ORTHO05D007107 7.9e-46 189.5 180 57.2
Sp1g09140 Schrenkiella parvula HOM05D006250 ORTHO05D007107 7.9e-46 189.5 242 49.6
Carub.0001s0994 Capsella rubella HOM05D006250 ORTHO05D007107 1.0e-45 189.1 180 57.2
BcaC07g38607 Brassica carinata HOM05D006250 ORTHO05D007107 2.3e-45 188.0 243 49.8
A08p33910 Brassica napus HOM05D006250 ORTHO05D007107 6.7e-45 186.4 182 56.6
BraA08t35306Z Brassica rapa HOM05D006250 ORTHO05D007107 6.7e-45 186.4 182 56.6
DCAR_026556 Daucus carota HOM05D006250 ORTHO05D007107 1.5e-44 185.3 175 58.3
unitig_749.g13267 Utricularia gibba HOM05D006250 ORTHO05D007107 2.5e-44 184.5 190 54.2
AL1G21310 Arabidopsis lyrata HOM05D006250 ORTHO05D007107 4.3e-44 183.7 180 54.4
AT1G10510 Arabidopsis thaliana HOM05D006250 ORTHO05D007107 5.7e-44 183.3 240 46.7
EL10Ac6g13760 Beta vulgaris HOM05D006250 ORTHO05D007107 5.7e-44 183.3 193 54.4
BcaC07g38569 Brassica carinata HOM05D006250 ORTHO05D007107 5.7e-44 183.3 181 56.9
Ah.03g132320 Amaranthus hybridus HOM05D006250 ORTHO05D007107 1.6e-43 181.8 608 56.2
ClCG09G022110 Citrullus lanatus HOM05D006250 ORTHO05D007107 2.8e-43 181.0 265 45.7
Hund05952 Selenicereus undatus HOM05D006250 ORTHO05D007107 1.4e-42 178.7 226 47.3
MELO3C002989.2 Cucumis melo HOM05D006250 ORTHO05D007107 5.3e-42 176.8 219 51.1
CSS0049978 Camellia sinensis var. sinensis HOM05D006250 ORTHO05D007107 1.2e-41 175.6 241 50.6
CsaV3_5G025030 Cucumis sativus L. HOM05D006250 ORTHO05D007107 2.6e-41 174.5 217 50.7
ATR0829G105 Amborella trichopoda HOM05D006250 ORTHO05D007107 4.5e-41 173.7 525 76.4
Actinidia15003 Actinidia chinensis HOM05D006250 ORTHO05D007107 1.3e-40 172.2 266 42.5
Sc11g0001380 Simmondsia chinensis HOM05D006250 ORTHO05D007107 6.5e-40 169.9 214 49.1
Nitab4.5_0005722g0060 Nicotiana tabacum HOM05D006250 ORTHO05D007107 1.4e-39 168.7 241 47.7
SGA_v2.0_scaffold8G04258 Striga asiatica HOM05D006250 ORTHO05D007107 7.2e-39 166.4 296 41.2
Dinv24907 Davidia involucrata HOM05D006250 ORTHO05D007107 6.1e-38 163.3 95 84.2
Sed0020226 Sechium edule HOM05D006250 ORTHO05D007107 6.1e-38 163.3 220 47.3
Hma1.2p1_1049F.1_g251790 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 1.3e-37 162.2 183 55.2
Hma1.2p1_2649F.1_g326133 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 1.3e-37 162.2 183 55.2
PGR102G1255 Punica granatum HOM05D006250 ORTHO05D007107 1.3e-37 162.2 108 74.1
Lsat_1_v5_gn_4_95161 Lactuca sativa HOM05D006250 ORTHO05D007107 1.1e-36 159.1 136 60.3
vmacro16283 Vaccinium macrocarpon HOM05D006250 ORTHO05D007107 4.1e-34 150.6 124 62.9
Os06g0237502 Oryza sativa ssp. japonica HOM05D006250 ORTHO05D007107 5.3e-34 150.2 592 64.7
Zm00001eb371900 Zea mays HOM05D006250 ORTHO05D007107 1.3e-32 145.6 198 46.5
Rhsim12G0124700 Rhododendron simsii HOM05D006250 ORTHO05D007107 5.1e-29 133.7 202 45.0
Peaxi162Scf00421g00828 Petunia axillaris HOM05D006250 ORTHO05D007107 1.5e-25 122.1 127 55.9
HPP92_017346 Vanilla planifolia HOM05D006250 ORTHO05D007107 2.2e-24 118.2 193 42.5
vmacro16284 Vaccinium macrocarpon HOM05D006250 ORTHO05D007107 2.6e-20 104.8 185 38.9
TAR629G0016 Trochodendron aralioides HOM05D006250 ORTHO05D007107 7.0e-18 96.7 427 63.7
Nitab4.5_0000257g0160 Nicotiana tabacum HOM05D006250 ORTHO05D007107 9.1e-18 96.3 247 35.6
Lsat_1_v5_gn_4_84060 Lactuca sativa HOM05D006250 ORTHO05D007107 8.5e-16 89.7 63 66.7
SEGI_23986 Sequoiadendron giganteum HOM05D006250 ORTHO05D007107 8.5e-16 89.7 165 39.4
AagrBONN_evm.TU.Sc2ySwM_344.3920 Anthoceros agrestis HOM05D006250 ORTHO05D007107 3.0e-13 81.3 173 37.0
Mapoly0090s0039 Marchantia polymorpha HOM05D006250 ORTHO05D007107 7.0e-10 70.1 51 62.7
DCAR_026558 Daucus carota HOM05D006250 ORTHO05D007107 5.9e-09 67.0 134 38.1
Hma1.2p1_2649F.1_g326137 Hydrangea macrophylla HOM05D006250 ORTHO05D007107 5.9e-09 67.0 43 67.4
Pp3c14_24560 Physcomitrium patens HOM05D006250 ORTHO05D007107 7.7e-09 66.6 160 35.0
Pp3c14_24566 Physcomitrium patens HOM05D006250 ORTHO05D007107 7.7e-09 66.6 160 35.0
SMO116G0024 Selaginella moellendorffii HOM05D006250 ORTHO05D007107 1.0e-08 66.2 62 48.4
CBR_g61650 Chara braunii HOM05D006250 ORTHO05D007107 8.0e-06 56.6 38 57.9


User provided reference genes

Program Settings