Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G069901 Phaseolus vulgaris HOM05D000085 ORTHO05D307591 6.5e-88 327.4 170 100.0
Phvul.001G167700 Phaseolus vulgaris HOM05D000085 ORTHO05D001460 1.2e-38 163.7 99 94.9
VMungo1383G0707 Vigna mungo HOM05D000085 ORTHO05D001460 3.6e-38 162.2 99 92.9
Glyma.19G170500 Glycine max HOM05D000085 ORTHO05D001460 6.8e-37 157.9 99 90.9
Psat3g053000 Pisum sativum HOM05D000085 ORTHO05D001460 9.8e-36 154.1 99 89.9
Lj1g0002457 Lotus japonicus HOM05D000085 ORTHO05D001460 1.3e-35 153.7 99 89.9
Medtr7g099220 Medicago truncatula HOM05D000085 ORTHO05D001460 2.9e-35 152.5 97 88.7
TPR.G30861 Trifolium pratense HOM05D000085 ORTHO05D001460 6.4e-35 151.4 99 88.9
arahy.Tifrunner.gnm1.ann1.JAA05R Arachis hypogaea HOM05D000085 ORTHO05D001460 1.2e-33 147.1 99 88.9
arahy.Tifrunner.gnm1.ann1.8YTQ3G Arachis hypogaea HOM05D000085 ORTHO05D001460 2.7e-33 146.0 99 87.9
Lalb_Chr20g0113421 Lupinus albus HOM05D000085 ORTHO05D001460 7.8e-33 144.4 99 82.8
Glyma.03G169200 Glycine max HOM05D000085 ORTHO05D001460 3.9e-32 142.1 99 83.8
Atru.chr5.1954 Acer truncatum HOM05D000085 ORTHO05D001460 5.1e-32 141.7 97 82.5
Ciclev10018935m.g Citrus clementina HOM05D000085 ORTHO05D001460 5.1e-32 141.7 97 81.4
Lalb_Chr01g0019461 Lupinus albus HOM05D000085 ORTHO05D001460 1.9e-31 139.8 97 84.5
Cfa002503 Carpinus fangiana HOM05D000085 ORTHO05D001460 1.6e-30 136.7 97 80.4
CANSAT01G1176 Cannabis sativa HOM05D000085 ORTHO05D001460 2.8e-30 136.0 97 77.3
ClCG07G001520 Citrullus lanatus HOM05D000085 ORTHO05D001460 2.8e-30 136.0 97 79.4
MELO3C012822.2 Cucumis melo HOM05D000085 ORTHO05D001460 3.6e-30 135.6 97 79.4
CsaV3_3G028550 Cucumis sativus L. HOM05D000085 ORTHO05D001460 8.1e-30 134.4 97 78.4
Potri.002G254600 Populus trichocarpa HOM05D000085 ORTHO05D001460 8.1e-30 134.4 97 76.3
GSVIVG01028463001 Vitis vinifera HOM05D000085 ORTHO05D001460 8.1e-30 134.4 97 78.4
QL09p042889 Quercus lobata HOM05D000085 ORTHO05D001460 1.4e-29 133.7 97 77.3
Haze_24727 Corylus avellana HOM05D000085 ORTHO05D001460 1.8e-29 133.3 97 78.4
Prupe.8G212200 Prunus persica HOM05D000085 ORTHO05D001460 1.8e-29 133.3 97 79.4
Gorai.001G182900 Gossypium raimondii HOM05D000085 ORTHO05D001460 5.2e-29 131.7 97 75.3
MD05G1185400 Malus domestica HOM05D000085 ORTHO05D001460 8.9e-29 131.0 99 75.8
Sabra14G0143800 Salix brachista HOM05D000085 ORTHO05D001460 1.2e-28 130.6 97 73.2
Sed0012307 Sechium edule HOM05D000085 ORTHO05D001460 1.2e-28 130.6 97 78.4
CiPaw.04G191500 Carya illinoinensis HOM05D000085 ORTHO05D001460 2.0e-28 129.8 97 78.4
Gohir.A08G192300 Gossypium hirsutum HOM05D000085 ORTHO05D001460 3.4e-28 129.0 97 75.3
Gohir.A07G153700 Gossypium hirsutum HOM05D000085 ORTHO05D001460 7.6e-28 127.9 97 74.2
Potri.014G194300 Populus trichocarpa HOM05D000085 ORTHO05D001460 7.6e-28 127.9 97 72.2
Eucgr.K03578 Eucalyptus grandis HOM05D000085 ORTHO05D001460 9.9e-28 127.5 97 74.2
FvH4_2g20190 Fragaria vesca HOM05D000085 ORTHO05D001460 1.7e-27 126.7 97 75.3
FAN15G0971 Fragaria x ananassa HOM05D000085 ORTHO05D001460 1.7e-27 126.7 97 75.3
FAN24G0207 Fragaria x ananassa HOM05D000085 ORTHO05D001460 1.7e-27 126.7 97 75.3
Gorai.004G222800 Gossypium raimondii HOM05D000085 ORTHO05D001460 1.7e-27 126.7 97 74.2
Manes.12G039400 Manihot esculenta HOM05D000085 ORTHO05D001460 1.7e-27 126.7 97 73.2
FAN27G2045 Fragaria x ananassa HOM05D000085 ORTHO05D001460 2.2e-27 126.3 97 74.2
RcHm_v2.0_Chr6g0285961 Rosa chinensis HOM05D000085 ORTHO05D001460 4.9e-27 125.2 97 74.2
Sed0012162 Sechium edule HOM05D000085 ORTHO05D001460 4.9e-27 125.2 98 75.5
Thecc.01G246700 Theobroma cacao HOM05D000085 ORTHO05D001460 4.9e-27 125.2 97 74.2
Glyma.10G041300 Glycine max HOM05D000085 ORTHO05D001460 1.1e-26 124.0 99 75.8
Duzib138G1416 Durio zibethinus HOM05D000085 ORTHO05D001460 2.4e-26 122.9 97 71.1
Lj5g0007264 Lotus japonicus HOM05D000085 ORTHO05D001460 2.4e-26 122.9 99 71.7
Duzib133G0714 Durio zibethinus HOM05D000085 ORTHO05D001460 3.2e-26 122.5 97 70.1
Glyma.13G128200 Glycine max HOM05D000085 ORTHO05D001460 4.1e-26 122.1 99 73.7
Actinidia30112 Actinidia chinensis HOM05D000085 ORTHO05D001460 2.7e-25 119.4 97 71.1
PGR044G1456 Punica granatum HOM05D000085 ORTHO05D001460 2.7e-25 119.4 97 70.1
QL09p043128 Quercus lobata HOM05D000085 ORTHO05D001460 2.7e-25 119.4 103 68.9
MD10G1173600 Malus domestica HOM05D000085 ORTHO05D001460 3.5e-25 119.0 97 73.2
Aa31LG8G17280 Aethionema arabicum HOM05D000085 ORTHO05D001460 4.6e-25 118.6 97 71.1
Dinv19256 Davidia involucrata HOM05D000085 ORTHO05D001460 4.6e-25 118.6 97 72.2
SalBow4G1533 Salvia bowleyana HOM05D000085 ORTHO05D001460 4.6e-25 118.6 99 69.7
TWI75G1728 Tripterygium wilfordii HOM05D000085 ORTHO05D001460 4.6e-25 118.6 97 69.1
Phvul.007G154500 Phaseolus vulgaris HOM05D000085 ORTHO05D001460 1.3e-24 117.1 99 72.7
Dinv43047 Davidia involucrata HOM05D000085 ORTHO05D001460 5.1e-24 115.2 97 70.1
AL3G53230 Arabidopsis lyrata HOM05D000085 ORTHO05D001460 6.6e-24 114.8 97 69.1
AL3G53250 Arabidopsis lyrata HOM05D000085 ORTHO05D001460 6.6e-24 114.8 97 69.1
AT2G20300 Arabidopsis thaliana HOM05D000085 ORTHO05D001460 6.6e-24 114.8 97 69.1
CARHR110790 Cardamine hirsuta HOM05D000085 ORTHO05D001460 6.6e-24 114.8 97 69.1
THA.LOC104804034 Tarenaya hassleriana HOM05D000085 ORTHO05D001460 6.6e-24 114.8 97 68.0
TAR365G1200 Trochodendron aralioides HOM05D000085 ORTHO05D001460 6.6e-24 114.8 97 72.2
CSS0013042 Camellia sinensis var. sinensis HOM05D000085 ORTHO05D001460 8.6e-24 114.4 97 71.1
Ca_09634_v3 Cicer arietinum L. HOM05D000085 ORTHO05D001460 1.5e-23 113.6 99 70.7
Manes.13G048500 Manihot esculenta HOM05D000085 ORTHO05D001460 1.5e-23 113.6 97 66.0
TAR636G2484 Trochodendron aralioides HOM05D000085 ORTHO05D001460 1.5e-23 113.6 97 70.1
THA.LOC104814539 Tarenaya hassleriana HOM05D000085 ORTHO05D001460 2.5e-23 112.8 97 70.1
Gohir.D07G159800 Gossypium hirsutum HOM05D000085 ORTHO05D001460 3.3e-23 112.5 97 66.0
MBI07_g14442_MAGBIO Magnolia biondii HOM05D000085 ORTHO05D001460 3.3e-23 112.5 97 69.1
Gohir.D08G210300 Gossypium hirsutum HOM05D000085 ORTHO05D001460 4.3e-23 112.1 84 73.8
Rhsim13G0041400 Rhododendron simsii HOM05D000085 ORTHO05D001460 5.6e-23 111.7 97 66.0
Carub.0003s3464 Capsella rubella HOM05D000085 ORTHO05D001460 9.6e-23 110.9 97 66.0
Aqoxy5G00086 Aquilegia oxysepala HOM05D000085 ORTHO05D001460 1.6e-22 110.2 97 63.9
Cc01_g17620 Coffea canephora HOM05D000085 ORTHO05D001460 1.6e-22 110.2 97 66.0
EL10Ac7g17733 Beta vulgaris HOM05D000085 ORTHO05D001460 2.1e-22 109.8 97 59.8
CAN.G154.8 Capsicum annuum HOM05D000085 ORTHO05D001460 4.7e-22 108.6 99 65.7
VMungo0647G0509 Vigna mungo HOM05D000085 ORTHO05D001460 4.7e-22 108.6 99 68.7
Peaxi162Scf00043g00189 Petunia axillaris HOM05D000085 ORTHO05D001460 6.2e-22 108.2 97 64.9
Ah.08g213740 Amaranthus hybridus HOM05D000085 ORTHO05D001460 8.1e-22 107.8 97 59.8
Migut.D00491 Erythranthe guttata HOM05D000085 ORTHO05D001460 1.1e-21 107.5 100 66.0
Medtr1g069340 Medicago truncatula HOM05D000085 ORTHO05D001460 1.1e-21 107.5 99 66.7
Solyc09g064270.3 Solanum lycopersicum HOM05D000085 ORTHO05D001460 1.4e-21 107.1 99 65.7
Sopen09g025470 Solanum pennellii HOM05D000085 ORTHO05D001460 1.4e-21 107.1 99 65.7
Ca_08761_v3 Cicer arietinum L. HOM05D000085 ORTHO05D001460 2.4e-21 106.3 100 70.0
Ca_30217_v3 Cicer arietinum L. HOM05D000085 ORTHO05D001460 2.4e-21 106.3 100 70.0
Sp3g33550 Schrenkiella parvula HOM05D000085 ORTHO05D001460 3.1e-21 105.9 97 68.0
Sabra02G0193600 Salix brachista HOM05D000085 ORTHO05D001460 4.0e-21 105.5 141 50.4
BcaB08g34903 Brassica carinata HOM05D000085 ORTHO05D001460 5.2e-21 105.1 97 66.0
Nitab4.5_0000392g0030 Nicotiana tabacum HOM05D000085 ORTHO05D001460 6.9e-21 104.8 99 65.7
Sc17g0002890 Simmondsia chinensis HOM05D000085 ORTHO05D001460 6.9e-21 104.8 97 59.8
Thhalv10001920m.g Eutrema salsugineum HOM05D000085 ORTHO05D001460 8.9e-21 104.4 97 66.0
Oeu026800.1 Olea europaea HOM05D000085 ORTHO05D001460 8.9e-21 104.4 97 64.9
A09p12800 Brassica napus HOM05D000085 ORTHO05D001460 1.5e-20 103.6 97 67.0
Nitab4.5_0000385g0110 Nicotiana tabacum HOM05D000085 ORTHO05D001460 1.5e-20 103.6 99 63.6
Nn3g19834 Nelumbo nucifera HOM05D000085 ORTHO05D001460 2.0e-20 103.2 97 63.9
Oeu039646.2 Olea europaea HOM05D000085 ORTHO05D001460 2.6e-20 102.8 97 64.9
BolC9t54422H Brassica oleracea HOM05D000085 ORTHO05D001460 3.4e-20 102.4 97 67.0
SGA_v2.0_scaffold1G00699 Striga asiatica HOM05D000085 ORTHO05D001460 3.4e-20 102.4 99 61.6
BcaNung04794 Brassica carinata HOM05D000085 ORTHO05D001460 4.4e-20 102.1 97 66.0
C09p15160 Brassica napus HOM05D000085 ORTHO05D001460 4.4e-20 102.1 97 66.0
MSTRG.12510 Avicennia marina HOM05D000085 ORTHO05D001460 5.8e-20 101.7 97 62.9
BraA09t36923Z Brassica rapa HOM05D000085 ORTHO05D001460 5.8e-20 101.7 97 66.0
BraA09t41281Z Brassica rapa HOM05D000085 ORTHO05D001460 7.6e-20 101.3 97 63.9
BcaC07g41221 Brassica carinata HOM05D000085 ORTHO05D001460 1.3e-19 100.5 97 63.9
BolC8t51786H Brassica oleracea HOM05D000085 ORTHO05D001460 1.3e-19 100.5 97 63.9
AUR62025411 Chenopodium quinoa HOM05D000085 ORTHO05D001460 1.3e-19 100.5 97 58.8
BcaC06g36713 Brassica carinata HOM05D000085 ORTHO05D001460 1.7e-19 100.1 97 64.9
A07p00410 Brassica napus HOM05D000085 ORTHO05D001460 1.7e-19 100.1 97 63.9
BolC7t40522H Brassica oleracea HOM05D000085 ORTHO05D001460 1.7e-19 100.1 97 64.9
BraA07t27833Z Brassica rapa HOM05D000085 ORTHO05D001460 1.7e-19 100.1 97 63.9
Hund05509 Selenicereus undatus HOM05D000085 ORTHO05D001460 1.7e-19 100.1 97 56.7
BcaB03g16818 Brassica carinata HOM05D000085 ORTHO05D001460 2.9e-19 99.4 97 63.9
C07p00830 Brassica napus HOM05D000200 ORTHO05D000262 3.8e-19 99.0 97 64.9
PSO832G2252 Papaver somniferum HOM05D000085 ORTHO05D001460 3.8e-19 99.0 98 66.3
Psat6g064120 Pisum sativum HOM05D000085 ORTHO05D001460 4.9e-19 98.6 98 65.3
AUR62008829 Chenopodium quinoa HOM05D000085 ORTHO05D001460 6.4e-19 98.2 97 57.7
PSO764G0081 Papaver somniferum HOM05D000085 ORTHO05D001460 1.1e-18 97.4 98 66.3
MSTRG.18364 Avicennia marina HOM05D000085 ORTHO05D001460 3.2e-18 95.9 97 59.8
SGA_v2.0_scaffold138G35155 Striga asiatica HOM05D000085 ORTHO05D001460 7.1e-18 94.7 97 57.7
Lsat_1_v5_gn_9_11760 Lactuca sativa HOM05D000085 ORTHO05D001460 1.2e-17 94.0 97 54.6
DCAR_000551 Daucus carota HOM05D000085 ORTHO05D001460 2.1e-17 93.2 99 59.6
HanXRQChr01g0014841 Helianthus annuus HOM05D000085 ORTHO05D001460 2.1e-17 93.2 97 59.8
vmacro02720 Vaccinium macrocarpon HOM05D000085 ORTHO05D001460 7.8e-17 91.3 97 55.7
HanXRQChr10g0280291 Helianthus annuus HOM05D000085 ORTHO05D001460 1.7e-16 90.1 97 54.6
SalBow6G2142 Salvia bowleyana HOM05D000085 ORTHO05D001460 1.7e-16 90.1 97 56.7
SHI30645 Sapria himalayana HOM05D000085 ORTHO05D001460 5.1e-16 88.6 97 58.8
DCAR_018530 Daucus carota HOM05D000085 ORTHO05D001460 8.7e-16 87.8 97 55.7
Lj1A76G62 Lonicera japonica HOM05D000085 ORTHO05D001460 3.3e-15 85.9 97 55.7
Lj2C1140G2 Lonicera japonica HOM05D003225 ORTHO05D001460 3.3e-15 85.9 80 66.2
ECA248G0304 Erigeron canadensis HOM05D000085 ORTHO05D001460 2.1e-14 83.2 118 49.2
Os02g0815900 Oryza sativa ssp. japonica HOM05D000085 ORTHO05D001460 3.6e-14 82.4 97 53.6
ECA247G2922 Erigeron canadensis HOM05D000085 ORTHO05D001460 6.2e-14 81.6 97 52.6
Lsat_1_v5_gn_5_180061 Lactuca sativa HOM05D000085 ORTHO05D001460 3.4e-12 75.9 97 55.7
Actinidia37565 Actinidia chinensis HOM05D000085 ORTHO05D001460 1.3e-11 73.9 81 63.0
Hund18327 Selenicereus undatus HOM05D000085 ORTHO05D001460 1.3e-11 73.9 117 42.7
CDE08G1619 Ceratophyllum demersum HOM05D000085 ORTHO05D001460 1.7e-11 73.6 97 50.5
SEGI_35702 Sequoiadendron giganteum HOM05D000085 ORTHO05D001460 1.7e-11 73.6 79 59.5
Zm00001eb191510 Zea mays HOM05D000085 ORTHO05D001460 1.7e-11 73.6 119 42.0
Zm00001eb258820 Zea mays HOM05D000085 ORTHO05D001460 2.9e-11 72.8 121 41.3
Nn1g03050 Nelumbo nucifera HOM05D000085 ORTHO05D001460 6.4e-11 71.6 77 57.1
HPP92_009059 Vanilla planifolia HOM05D000085 ORTHO05D001460 4.2e-10 68.9 97 49.5
Lalb_Chr02g0152811 Lupinus albus HOM05D000085 ORTHO05D001460 7.1e-10 68.2 63 60.3
SEGI_16297 Sequoiadendron giganteum HOM05D000085 ORTHO05D001460 9.3e-10 67.8 101 49.5
COL.COLO4_24809 Corchorus olitorius HOM05D000085 ORTHO05D001460 1.2e-09 67.4 45 77.8
Lalb_Chr02g0152821 Lupinus albus HOM05D000085 ORTHO05D001460 1.6e-09 67.0 50 78.0
Cpa.g.sc87.65 Carica papaya HOM05D000085 ORTHO05D001460 1.3e-08 63.9 55 69.1
Cpa.g.sc87.64 Carica papaya HOM05D000085 ORTHO05D001460 3.9e-08 62.4 44 68.2
Glyma.03G104950 Glycine max HOM05D000085 ORTHO05D001460 3.3e-07 59.3 40 77.5
Cfa003081 Carpinus fangiana HOM05D000085 ORTHO05D001460 8.1e-06 54.7 98 42.9


User provided reference genes

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