Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G066300 Phaseolus vulgaris HOM05D004218 ORTHO05D004938 2.5e-209 731.9 367 100.0
VMungo1215G2729 Vigna mungo HOM05D004218 ORTHO05D004938 5.7e-198 694.1 368 95.9
Glyma.02G021600 Glycine max HOM05D004218 ORTHO05D004938 9.1e-188 660.2 374 89.6
Lalb_Chr17g0340391 Lupinus albus HOM05D004218 ORTHO05D004938 6.4e-173 610.9 369 82.7
Lj2g0000105 Lotus japonicus HOM05D004218 ORTHO05D004938 3.2e-172 608.6 368 85.3
Medtr5g038460 Medicago truncatula HOM05D004218 ORTHO05D004938 1.2e-166 590.1 372 81.7
Ca_04743_v3 Cicer arietinum L. HOM05D004218 ORTHO05D004938 5.6e-161 571.2 372 80.9
TPR.G13761 Trifolium pratense HOM05D004218 ORTHO05D004938 1.4e-159 566.6 362 80.1
Psat0s3244g0040 Pisum sativum HOM05D004218 ORTHO05D004938 2.1e-155 552.7 377 76.1
arahy.Tifrunner.gnm1.ann1.VAP5EU Arachis hypogaea HOM05D004218 ORTHO05D004938 1.5e-150 536.6 378 76.2
arahy.Tifrunner.gnm1.ann1.08CHDU Arachis hypogaea HOM05D004218 ORTHO05D004938 2.2e-149 532.7 378 75.7
Cfa009032 Carpinus fangiana HOM05D004218 ORTHO05D004938 4.3e-145 518.5 367 71.7
GSVIVG01020072001 Vitis vinifera HOM05D004218 ORTHO05D004938 4.3e-145 518.5 374 71.4
QL03p065637 Quercus lobata HOM05D004218 ORTHO05D004938 2.8e-144 515.8 357 73.4
Thecc.02G354900 Theobroma cacao HOM05D004218 ORTHO05D004938 6.2e-144 514.6 338 75.7
Lj6A794T99 Lonicera japonica HOM05D004218 ORTHO05D004938 2.4e-143 512.7 319 77.7
Duzib248G0205 Durio zibethinus HOM05D004218 ORTHO05D004938 3.1e-143 512.3 309 80.6
Hma1.2p1_1545F.1_g289920 Hydrangea macrophylla HOM05D004218 ORTHO05D004938 5.2e-143 511.5 359 71.9
CSS0011407 Camellia sinensis var. sinensis HOM05D004218 ORTHO05D004938 6.9e-143 511.1 324 77.8
Dinv34202 Davidia involucrata HOM05D004218 ORTHO05D004938 3.4e-142 508.8 299 82.3
Prupe.1G268000 Prunus persica HOM05D004218 ORTHO05D004938 1.7e-141 506.5 366 72.1
Ciclev10031724m.g Citrus clementina HOM05D004218 ORTHO05D004938 2.2e-141 506.1 349 72.5
COL.COLO4_07925 Corchorus olitorius HOM05D004218 ORTHO05D004938 7.1e-140 501.1 366 68.9
TAR374G0431 Trochodendron aralioides HOM05D004218 ORTHO05D004938 1.6e-139 500.0 338 73.7
Nn3g17132 Nelumbo nucifera HOM05D004218 ORTHO05D004938 7.8e-139 497.7 304 78.9
Actinidia31179 Actinidia chinensis HOM05D004218 ORTHO05D004938 5.1e-138 495.0 354 70.9
vmacro01228 Vaccinium macrocarpon HOM05D004218 ORTHO05D004938 5.1e-138 495.0 298 79.9
Cpa.g.sc5.274 Carica papaya HOM05D004218 ORTHO05D004938 6.6e-138 494.6 304 79.9
MD16G1078500 Malus domestica HOM05D004218 ORTHO05D004938 1.1e-137 493.8 332 74.7
FAN22G1204 Fragaria x ananassa HOM05D004218 ORTHO05D004938 1.5e-137 493.4 356 71.3
Eucgr.G02550 Eucalyptus grandis HOM05D004218 ORTHO05D004938 1.9e-137 493.0 361 70.6
CANSAT64G2557 Cannabis sativa HOM05D004218 ORTHO05D004938 3.3e-137 492.3 311 78.1
PGR119G2468 Punica granatum HOM05D004218 ORTHO05D004938 3.3e-137 492.3 359 70.8
Rhsim12G0057400 Rhododendron simsii HOM05D004218 ORTHO05D004938 9.6e-137 490.7 344 72.1
Gohir.D13G068200 Gossypium hirsutum HOM05D004218 ORTHO05D004938 2.1e-136 489.6 330 72.1
Manes.05G096800 Manihot esculenta HOM05D004218 ORTHO05D004938 2.8e-136 489.2 361 70.6
Cc11_g13440 Coffea canephora HOM05D004218 ORTHO05D004938 1.1e-135 487.3 323 73.1
FAN17G0090 Fragaria x ananassa HOM05D004218 ORTHO05D004938 1.1e-135 487.3 302 78.8
RcHm_v2.0_Chr4g0440591 Rosa chinensis HOM05D004218 ORTHO05D004938 2.4e-135 486.1 375 68.5
CsaV3_6G036150 Cucumis sativus L. HOM05D004218 ORTHO05D004938 4.0e-135 485.3 359 67.4
Gorai.013G077700 Gossypium raimondii HOM05D004218 ORTHO05D004938 9.0e-135 484.2 330 71.5
Hund25269 Selenicereus undatus HOM05D004218 ORTHO05D004938 2.0e-134 483.0 330 73.3
Aqoxy3G03270 Aquilegia oxysepala HOM05D004218 ORTHO05D004938 5.8e-134 481.5 373 66.2
CAN.G279.12 Capsicum annuum HOM05D004218 ORTHO05D004938 1.3e-133 480.3 311 74.9
THA.LOC104822930 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 2.2e-133 479.6 344 70.1
FAN12G1121 Fragaria x ananassa HOM05D004218 ORTHO05D004938 4.9e-133 478.4 363 69.1
CiPaw.05G139700 Carya illinoinensis HOM05D004218 ORTHO05D004938 4.2e-132 475.3 286 80.8
Potri.008G194800 Populus trichocarpa HOM05D004218 ORTHO05D004938 1.6e-131 473.4 379 68.1
MSTRG.7824 Avicennia marina HOM05D004218 ORTHO05D004938 4.6e-131 471.9 370 65.9
SGA_v2.0_scaffold302G47864 Striga asiatica HOM05D004218 ORTHO05D004938 6.0e-131 471.5 305 74.8
Sopen05g003030 Solanum pennellii HOM05D004218 ORTHO05D004938 7.9e-131 471.1 304 75.3
PGSC0003DMG400017643 Solanum tuberosum HOM05D004218 ORTHO05D004938 1.0e-130 470.7 367 67.0
Migut.L01342 Erythranthe guttata HOM05D004218 ORTHO05D004938 2.3e-130 469.5 361 65.4
AL1G17150 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 5.1e-130 468.4 302 74.2
Solyc05g007060.4 Solanum lycopersicum HOM05D004218 ORTHO05D004938 5.1e-130 468.4 304 75.3
TWI18G0549 Tripterygium wilfordii HOM05D004218 ORTHO05D004938 5.1e-130 468.4 302 76.2
Aa31LG7G8130 Aethionema arabicum HOM05D004218 ORTHO05D004938 8.7e-130 467.6 327 70.9
BolC5t29284H Brassica oleracea HOM05D004218 ORTHO05D004938 3.3e-129 465.7 373 64.3
Sc14g0008380 Simmondsia chinensis HOM05D004218 ORTHO05D004938 3.3e-129 465.7 301 77.4
AT1G07040 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 4.3e-129 465.3 365 65.2
Sed0012992 Sechium edule HOM05D004218 ORTHO05D004938 4.3e-129 465.3 359 68.0
DCAR_027386 Daucus carota HOM05D004218 ORTHO05D004938 5.6e-129 464.9 311 72.3
Sabra08G0148000 Salix brachista HOM05D004218 ORTHO05D004938 5.6e-129 464.9 369 67.5
CARHR006730 Cardamine hirsuta HOM05D004218 ORTHO05D004938 7.4e-129 464.5 313 71.9
PSO017G6443 Papaver somniferum HOM05D004218 ORTHO05D004938 7.4e-129 464.5 368 64.9
MELO3C026498.2 Cucumis melo HOM05D004218 ORTHO05D004938 9.6e-129 464.2 326 69.9
Dinv24956 Davidia involucrata HOM05D004218 ORTHO05D004938 9.6e-129 464.2 334 70.7
Lsat_1_v5_gn_8_54121 Lactuca sativa HOM05D004218 ORTHO05D004938 9.6e-129 464.2 311 73.0
PSO478G0406 Papaver somniferum HOM05D004218 ORTHO05D004938 9.6e-129 464.2 368 64.9
Sp1g05760 Schrenkiella parvula HOM05D004218 ORTHO05D004938 2.8e-128 462.6 299 73.6
Thhalv10007958m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 4.8e-128 461.8 309 72.5
Gohir.A13G052700 Gossypium hirsutum HOM05D004218 ORTHO05D004938 4.8e-128 461.8 346 66.2
Peaxi162Scf00209g00319 Petunia axillaris HOM05D004218 ORTHO05D004938 6.2e-128 461.5 298 75.5
AUR62026251 Chenopodium quinoa HOM05D004218 ORTHO05D004938 8.1e-128 461.1 298 75.2
A10p05580 Brassica napus HOM05D004218 ORTHO05D004938 1.4e-127 460.3 310 71.6
Carub.0001s0633 Capsella rubella HOM05D004218 ORTHO05D004938 2.4e-127 459.5 309 71.5
BraA10t42819Z Brassica rapa HOM05D004218 ORTHO05D004938 6.9e-127 458.0 362 64.1
Ah.01g005530 Amaranthus hybridus HOM05D004218 ORTHO05D004938 3.4e-126 455.7 300 74.7
ClCG08G009010 Citrullus lanatus HOM05D004218 ORTHO05D004938 2.2e-125 453.0 433 58.0
EL10Ac6g13149 Beta vulgaris HOM05D004218 ORTHO05D004938 1.4e-124 450.3 370 65.1
ATR1120G161 Amborella trichopoda HOM05D004218 ORTHO05D004938 2.4e-124 449.5 319 69.0
HanXRQChr08g0209171 Helianthus annuus HOM05D004218 ORTHO05D004938 1.8e-122 443.4 354 64.7
Os10g0463800 Oryza sativa ssp. japonica HOM05D004218 ORTHO05D004938 8.7e-122 441.0 326 66.0
Zm00001eb046510 Zea mays HOM05D004218 ORTHO05D004938 2.5e-121 439.5 299 70.2
CDE06G2220 Ceratophyllum demersum HOM05D004218 ORTHO05D004938 3.3e-121 439.1 319 68.0
unitig_749.g13251 Utricularia gibba HOM05D004218 ORTHO05D004938 3.7e-120 435.6 332 67.8
ECA236G4940 Erigeron canadensis HOM05D004218 ORTHO05D004938 3.1e-119 432.6 310 69.4
HPP92_000630 Vanilla planifolia HOM05D004218 ORTHO05D004938 3.8e-117 425.6 349 60.2
C05p05130 Brassica napus HOM05D004218 ORTHO05D004938 2.7e-115 419.5 279 71.7
Nitab4.5_0009649g0010 Nicotiana tabacum HOM05D004218 ORTHO05D004938 3.9e-114 415.6 311 67.8
FAN07G0325 Fragaria x ananassa HOM05D004218 ORTHO05D004938 1.9e-113 413.3 248 80.6
SalBow2G1790 Salvia bowleyana HOM05D004218 ORTHO05D004938 2.1e-112 409.8 274 73.0
SalBow2G2061 Salvia bowleyana HOM05D004218 ORTHO05D004938 2.1e-112 409.8 274 73.0
SEGI_07096 Sequoiadendron giganteum HOM05D004218 ORTHO05D004938 2.2e-109 399.8 294 65.3
Glyma.01G042500 Glycine max HOM05D004218 ORTHO05D004938 3.2e-108 396.0 374 62.6
Nitab4.5_0009146g0020 Nicotiana tabacum HOM05D004218 ORTHO05D004938 2.7e-107 392.9 310 65.5
Atru.chr11.1849 Acer truncatum HOM05D004218 ORTHO05D004938 1.9e-100 370.2 286 65.0
Psat0s917g0040 Pisum sativum HOM05D004218 ORTHO05D004938 2.5e-100 369.8 219 79.5
AagrBONN_evm.TU.Sc2ySwM_362.1084 Anthoceros agrestis HOM05D004218 ORTHO05D004938 4.6e-99 365.5 280 62.9
Pp3c14_9960 Physcomitrium patens HOM05D004218 ORTHO05D004938 6.7e-98 361.7 302 59.6
FvH4_4g31940 Fragaria vesca HOM05D004218 ORTHO05D004938 5.7e-97 358.6 277 67.5
Mapoly0004s0239 Marchantia polymorpha HOM05D004218 ORTHO05D004938 4.8e-96 355.5 373 52.5
BraA07t29096Z Brassica rapa HOM05D004218 ORTHO05D004938 2.9e-93 346.3 299 55.5
Thhalv10008275m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 3.8e-93 345.9 297 54.2
SMO118G0107 Selaginella moellendorffii HOM05D004218 ORTHO05D004938 7.2e-92 341.7 289 59.2
A07p13260 Brassica napus HOM05D004218 ORTHO05D004938 9.4e-92 341.3 299 54.8
AUR62026441 Chenopodium quinoa HOM05D004218 ORTHO05D004938 2.1e-91 340.1 231 72.3
BcaB03g14100 Brassica carinata HOM05D004218 ORTHO05D004938 3.6e-91 339.3 291 54.3
Thhalv10007811m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 3.6e-91 339.3 324 51.2
A07p13210 Brassica napus HOM05D004218 ORTHO05D004938 2.3e-90 336.7 297 53.9
BcaC06g35101 Brassica carinata HOM05D004218 ORTHO05D004938 8.8e-90 334.7 292 53.4
BcaB06g28798 Brassica carinata HOM05D004218 ORTHO05D004938 2.0e-89 333.6 297 53.5
BcaB03g11982 Brassica carinata HOM05D004218 ORTHO05D004938 2.6e-89 333.2 290 54.5
BolC4t27868H Brassica oleracea HOM05D004218 ORTHO05D004938 2.6e-89 333.2 297 53.9
BraA07t29093Z Brassica rapa HOM05D004218 ORTHO05D004938 3.3e-89 332.8 297 53.2
AT1G27020 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 9.7e-89 331.3 297 55.6
AL1G38500 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.7e-88 330.5 297 54.9
AL1G38480 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 2.2e-88 330.1 297 54.2
THA.LOC104822097 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 4.8e-88 328.9 303 52.8
AL1G38490 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 8.2e-88 328.2 297 52.5
Thhalv10023603m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 8.2e-88 328.2 296 53.7
AT1G27030 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 2.4e-87 326.6 297 52.9
Thhalv10008276m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 9.1e-87 324.7 295 52.9
CARHR024900 Cardamine hirsuta HOM05D004218 ORTHO05D004938 1.2e-86 324.3 297 53.5
C07p19810 Brassica napus HOM05D004218 ORTHO05D004938 5.9e-86 322.0 297 53.5
BolC7t42494H Brassica oleracea HOM05D004218 ORTHO05D004938 5.9e-86 322.0 297 53.5
CARHR024890 Cardamine hirsuta HOM05D004218 ORTHO05D004938 1.0e-85 321.2 302 50.3
BraA09t39542Z Brassica rapa HOM05D004218 ORTHO05D004938 1.3e-85 320.9 300 53.3
A09p40450 Brassica napus HOM05D004218 ORTHO05D004938 2.2e-85 320.1 300 53.0
Sp1g21785 Schrenkiella parvula HOM05D004218 ORTHO05D004938 2.2e-85 320.1 303 53.1
A07p13220 Brassica napus HOM05D004218 ORTHO05D004938 2.9e-85 319.7 297 53.2
Sp1g21780 Schrenkiella parvula HOM05D004218 ORTHO05D004938 2.9e-85 319.7 297 52.5
Thhalv10000255m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 3.8e-85 319.3 297 52.9
BcaB03g14099 Brassica carinata HOM05D004218 ORTHO05D004938 5.0e-85 318.9 305 51.1
BraA08t34706Z Brassica rapa HOM05D004218 ORTHO05D004938 5.0e-85 318.9 298 52.0
Sp1g21770 Schrenkiella parvula HOM05D004218 ORTHO05D004938 5.0e-85 318.9 295 52.9
Carub.0001s2395 Capsella rubella HOM05D004218 ORTHO05D004938 8.5e-85 318.2 298 51.7
BcaC06g35098 Brassica carinata HOM05D004218 ORTHO05D004938 4.2e-84 315.8 272 54.8
A08p27710 Brassica napus HOM05D004218 ORTHO05D004938 8.0e-83 311.6 298 50.7
Carub.0001s2394 Capsella rubella HOM05D004218 ORTHO05D004938 2.8e-80 303.1 302 47.7
BraA07t29094Z Brassica rapa HOM05D004218 ORTHO05D004938 8.2e-80 301.6 293 50.9
AL1G38470 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 5.3e-79 298.9 267 52.8
BcaC07g39255 Brassica carinata HOM05D004218 ORTHO05D004938 3.5e-78 296.2 287 49.5
BcaC05g26350 Brassica carinata HOM05D004218 ORTHO05D004938 4.7e-75 285.8 300 50.0
Haze_12061 Corylus avellana HOM05D004218 ORTHO05D004938 4.0e-74 282.7 230 64.3
BolC5t31091H Brassica oleracea HOM05D004218 ORTHO05D004938 2.0e-73 280.4 286 49.7
C05p23720 Brassica napus HOM05D004218 ORTHO05D004938 1.1e-71 274.6 279 49.8
C08p22580 Brassica napus HOM05D004218 ORTHO05D004938 1.3e-69 267.7 349 40.1
BcaC06g35100 Brassica carinata HOM05D004218 ORTHO05D004938 2.6e-65 253.4 244 50.8
PRCOL_00000833 Prasinoderma coloniale HOM05D004218 ORTHO05D004938 4.9e-56 222.6 290 41.7
AL8G21080 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.4e-55 221.1 219 50.2
C07p19800 Brassica napus HOM05D004218 ORTHO05D004938 9.2e-55 218.4 194 54.6
BolC7t42493H Brassica oleracea HOM05D004218 ORTHO05D004938 9.2e-55 218.4 194 54.6
Lj6A794G97 Lonicera japonica HOM05D004218 ORTHO05D004938 2.7e-54 216.9 189 60.3
BcaC05g24668 Brassica carinata HOM05D004218 ORTHO05D002942 6.0e-54 215.7 187 58.8
Cre07.g342800 Chlamydomonas reinhardtii HOM05D004218 ORTHO05D004938 1.7e-48 197.6 325 37.8
BolC7t42500H Brassica oleracea HOM05D004218 ORTHO05D004938 2.7e-38 163.7 127 53.5
BolC8t49896H Brassica oleracea HOM05D004218 ORTHO05D004938 4.6e-38 162.9 146 54.1
AL8G21090 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.5e-36 157.9 296 33.1
C07p19850 Brassica napus HOM05D004218 ORTHO05D004938 1.9e-36 157.5 127 52.0
BolC7t42503H Brassica oleracea HOM05D004218 ORTHO05D004938 1.9e-36 157.5 127 52.0
AUR62026443 Chenopodium quinoa HOM05D004218 ORTHO05D004938 5.4e-31 139.4 81 82.7
C07p19840 Brassica napus HOM05D004218 ORTHO05D004938 9.2e-31 138.7 110 51.8
C07p19830 Brassica napus HOM05D004218 ORTHO05D004938 3.9e-29 133.3 157 49.0
CAN.G683.6 Capsicum annuum HOM05D004218 ORTHO05D004938 7.1e-23 112.5 94 62.8
MCO10G201 Micromonas commoda HOM05D004218 ORTHO05D004938 2.5e-20 104.0 298 28.2
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 6.7e-13 79.3 57 70.2


User provided reference genes

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