Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G058800 Phaseolus vulgaris HOM05D000028 ORTHO05D307787 8.9e-102 373.6 192 100.0
Phvul.002G058200 Phaseolus vulgaris HOM05D000028 ORTHO05D004513 5.2e-25 118.6 175 48.6
VMungo1215G0861 Vigna mungo HOM05D000028 ORTHO05D004513 1.7e-23 113.6 155 48.4
Glyma.01G209000 Glycine max HOM05D000028 ORTHO05D004513 4.5e-21 105.5 164 46.3
Lalb_Chr05g0214441 Lupinus albus HOM05D000028 ORTHO05D004513 5.9e-21 105.1 174 45.4
Lj2g0018491 Lotus japonicus HOM05D000028 ORTHO05D004513 1.0e-20 104.4 175 43.4
Ca_24580_v3 Cicer arietinum L. HOM05D000502 ORTHO05D004513 5.0e-20 102.1 175 42.9
Lalb_Chr09g0324361 Lupinus albus HOM05D000028 ORTHO05D004513 1.9e-19 100.1 168 44.0
Glyma.11G033200 Glycine max HOM05D000028 ORTHO05D004513 3.3e-19 99.4 154 45.5
TPR.G25885 Trifolium pratense HOM05D000028 ORTHO05D004513 7.2e-19 98.2 168 42.3
Medtr5g012650 Medicago truncatula HOM05D000028 ORTHO05D004513 9.5e-19 97.8 164 43.3
Psat2g177920 Pisum sativum HOM05D000028 ORTHO05D004513 3.6e-18 95.9 176 40.9
Lalb_Chr05g0221231 Lupinus albus HOM05D000028 ORTHO05D004513 6.8e-17 91.7 176 39.2
Lalb_Chr09g0330081 Lupinus albus HOM05D000028 ORTHO05D004513 7.5e-16 88.2 156 41.7
arahy.Tifrunner.gnm1.ann1.NR8AVU Arachis hypogaea HOM05D000028 ORTHO05D004513 9.8e-16 87.8 184 39.1
Haze_07906 Corylus avellana HOM05D000028 ORTHO05D004513 2.2e-15 86.7 164 39.0
Lalb_Chr16g0386721 Lupinus albus HOM05D000028 ORTHO05D004513 3.7e-15 85.9 177 36.7
RcHm_v2.0_Chr7g0203481 Rosa chinensis HOM05D000028 ORTHO05D004513 3.7e-15 85.9 173 38.2
arahy.Tifrunner.gnm1.ann1.FM55WC Arachis hypogaea HOM05D000028 ORTHO05D004513 1.1e-14 84.3 183 37.7
Gorai.004G198200 Gossypium raimondii HOM05D000028 ORTHO05D004513 1.1e-14 84.3 159 38.4
Phvul.003G221100 Phaseolus vulgaris HOM05D000028 ORTHO05D004513 1.1e-14 84.3 153 39.2
Rhsim07G0108600 Rhododendron simsii HOM05D000028 ORTHO05D004513 1.4e-14 84.0 184 35.9
ClCG01G004080 Citrullus lanatus HOM05D000028 ORTHO05D004513 1.8e-14 83.6 155 39.4
CSS0043657 Camellia sinensis var. sinensis HOM05D000028 ORTHO05D004513 3.1e-14 82.8 180 33.9
Hma1.2p1_0316F.1_g123120 Hydrangea macrophylla HOM05D000028 ORTHO05D004513 3.1e-14 82.8 233 34.8
Gohir.D08G188300 Gossypium hirsutum HOM05D000028 ORTHO05D004513 5.4e-14 82.0 160 38.8
Glyma.05G059900 Glycine max HOM05D000028 ORTHO05D004513 7.0e-14 81.6 165 37.6
Cfa012724 Carpinus fangiana HOM05D000028 ORTHO05D004513 9.2e-14 81.3 170 37.1
Ca_21970_v3 Cicer arietinum L. HOM05D000028 ORTHO05D004513 9.2e-14 81.3 166 35.5
FAN13G1332 Fragaria x ananassa HOM05D000028 ORTHO05D004513 9.2e-14 81.3 171 36.8
Gohir.A08G170000 Gossypium hirsutum HOM05D000028 ORTHO05D004513 1.2e-13 80.9 160 38.8
PGR042G2737 Punica granatum HOM05D000028 ORTHO05D004513 1.6e-13 80.5 203 34.0
CARHR173890 Cardamine hirsuta HOM05D000028 ORTHO05D004513 2.0e-13 80.1 193 35.2
VMungo0251G0279 Vigna mungo HOM05D000028 ORTHO05D004513 2.7e-13 79.7 165 37.0
Gohir.D09G191000 Gossypium hirsutum HOM05D000028 ORTHO05D004513 3.5e-13 79.3 163 38.0
Duzib205G1008 Durio zibethinus HOM05D000028 ORTHO05D004513 4.5e-13 79.0 191 36.6
MD06G1057600 Malus domestica HOM05D000028 ORTHO05D004513 4.5e-13 79.0 179 33.5
Dinv39151 Davidia involucrata HOM05D000028 ORTHO05D004513 5.9e-13 78.6 196 33.2
Atru.chr9.1306 Acer truncatum HOM05D000028 ORTHO05D004513 7.8e-13 78.2 178 34.3
AL8G10510 Arabidopsis lyrata HOM05D000028 ORTHO05D004513 7.8e-13 78.2 180 36.7
AT5G47470 Arabidopsis thaliana HOM05D000028 ORTHO05D004513 7.8e-13 78.2 180 36.1
Cpa.g.sc29.164 Carica papaya HOM05D000028 ORTHO05D004513 7.8e-13 78.2 160 35.0
QL12p012033 Quercus lobata HOM05D000028 ORTHO05D004513 7.8e-13 78.2 178 34.8
Eucgr.E00422 Eucalyptus grandis HOM05D000028 ORTHO05D004513 1.0e-12 77.8 170 33.5
MD04G1063300 Malus domestica HOM05D000028 ORTHO05D004513 1.0e-12 77.8 173 35.3
Potri.001G157600 Populus trichocarpa HOM05D000028 ORTHO05D004513 1.0e-12 77.8 177 32.8
Sabra01G0133900 Salix brachista HOM05D000028 ORTHO05D004513 1.0e-12 77.8 178 32.6
vmacro14081 Vaccinium macrocarpon HOM05D000028 ORTHO05D004513 1.0e-12 77.8 183 33.3
BcaC06g31381 Brassica carinata HOM05D000028 ORTHO05D004513 1.3e-12 77.4 195 35.4
Thecc.03G250500 Theobroma cacao HOM05D000028 ORTHO05D004513 1.3e-12 77.4 191 34.6
CiPaw.12G051900 Carya illinoinensis HOM05D000028 ORTHO05D004513 2.3e-12 76.6 160 37.5
CsaV3_5G004250 Cucumis sativus L. HOM05D000028 ORTHO05D004513 2.3e-12 76.6 181 35.4
TWI81G0421 Tripterygium wilfordii HOM05D000028 ORTHO05D004513 2.3e-12 76.6 170 35.3
Manes.02G040000 Manihot esculenta HOM05D000028 ORTHO05D004513 2.9e-12 76.3 171 35.7
Sed0006331 Sechium edule HOM05D000028 ORTHO05D004513 2.9e-12 76.3 171 36.3
Actinidia27468 Actinidia chinensis HOM05D001088 ORTHO05D004513 3.8e-12 75.9 158 34.8
MELO3C005529.2 Cucumis melo HOM05D000028 ORTHO05D004513 3.8e-12 75.9 181 35.4
Medtr4g100840 Medicago truncatula HOM05D000028 ORTHO05D004513 5.0e-12 75.5 165 34.5
BcaC03g16964 Brassica carinata HOM05D000028 ORTHO05D004513 6.6e-12 75.1 194 35.1
C02p48700 Brassica napus HOM05D000028 ORTHO05D004513 6.6e-12 75.1 195 35.9
MELO3C013934.2 Cucumis melo HOM05D000028 ORTHO05D004513 6.6e-12 75.1 164 35.4
Gohir.A12G216800 Gossypium hirsutum HOM05D000028 ORTHO05D004513 6.6e-12 75.1 182 34.1
Gohir.D12G219300 Gossypium hirsutum HOM05D000028 ORTHO05D004513 6.6e-12 75.1 182 34.1
Gorai.008G235000 Gossypium raimondii HOM05D000028 ORTHO05D004513 6.6e-12 75.1 182 34.1
Carub.0008s0030 Capsella rubella HOM05D000028 ORTHO05D004513 8.6e-12 74.7 165 35.8
CiPaw.11G079600 Carya illinoinensis HOM05D000028 ORTHO05D004513 8.6e-12 74.7 162 35.2
Sc22g0000920 Simmondsia chinensis HOM05D000028 ORTHO05D004513 8.6e-12 74.7 159 36.5
A02p31360 Brassica napus HOM05D000028 ORTHO05D004513 1.1e-11 74.3 176 36.4
BraA02t08138Z Brassica rapa HOM05D000028 ORTHO05D004513 1.1e-11 74.3 176 36.4
Manes.01G081100 Manihot esculenta HOM05D000028 ORTHO05D004513 1.5e-11 73.9 160 35.6
CiPaw.11G079700 Carya illinoinensis HOM05D000028 ORTHO05D004513 1.9e-11 73.6 162 35.2
CsaV3_3G002650 Cucumis sativus L. HOM05D000028 ORTHO05D004513 2.5e-11 73.2 165 37.6
Sc01g0008420 Simmondsia chinensis HOM05D000028 ORTHO05D004513 2.5e-11 73.2 162 34.6
THA.LOC104806724 Tarenaya hassleriana HOM05D000028 ORTHO05D004513 2.5e-11 73.2 149 34.9
Nitab4.5_0004856g0050 Nicotiana tabacum HOM05D000174 ORTHO05D004513 3.3e-11 72.8 130 37.7
Dinv21643 Davidia involucrata HOM05D000174 ORTHO05D004513 4.3e-11 72.4 155 36.8
Sed0020968 Sechium edule HOM05D000028 ORTHO05D004513 5.6e-11 72.0 185 34.1
BcaC06g34249 Brassica carinata HOM05D000028 ORTHO05D004513 7.3e-11 71.6 187 34.8
C07p31130 Brassica napus HOM05D000028 ORTHO05D004513 7.3e-11 71.6 187 34.8
BolC7t43654H Brassica oleracea HOM05D000028 ORTHO05D004513 7.3e-11 71.6 187 34.8
Thhalv10000951m.g Eutrema salsugineum HOM05D000028 ORTHO05D004513 7.3e-11 71.6 186 33.3
Potri.003G077300 Populus trichocarpa HOM05D000028 ORTHO05D004513 7.3e-11 71.6 171 33.9
arahy.Tifrunner.gnm1.ann1.84X0BD Arachis hypogaea HOM05D000028 ORTHO05D004513 9.5e-11 71.2 171 32.7
Sp2g12190 Schrenkiella parvula HOM05D000028 ORTHO05D004513 1.2e-10 70.9 176 32.4
Lsat_1_v5_gn_6_90880 Lactuca sativa HOM05D000028 ORTHO05D004513 1.6e-10 70.5 179 30.7
Sabra03G0047700 Salix brachista HOM05D000502 ORTHO05D004513 1.6e-10 70.5 161 33.5
PGSC0003DMG400004816 Solanum tuberosum HOM05D000028 ORTHO05D004513 1.6e-10 70.5 147 31.3
A06p45050 Brassica napus HOM05D000028 ORTHO05D004513 2.8e-10 69.7 187 34.2
BraA06t27375Z Brassica rapa HOM05D000028 ORTHO05D004513 2.8e-10 69.7 187 34.2
Peaxi162Scf00174g00314 Petunia axillaris HOM05D000174 ORTHO05D004513 2.8e-10 69.7 127 36.2
Hund11597 Selenicereus undatus HOM05D000028 ORTHO05D004513 6.1e-10 68.6 154 33.8
arahy.Tifrunner.gnm1.ann1.7W2QL6 Arachis hypogaea HOM05D000028 ORTHO05D004513 1.0e-09 67.8 178 31.5
RcHm_v2.0_Chr6g0263851 Rosa chinensis HOM05D000028 ORTHO05D004513 1.0e-09 67.8 171 33.3
Solyc08g078580.3 Solanum lycopersicum HOM05D000028 ORTHO05D004513 1.0e-09 67.8 159 30.2
TWI60G1727 Tripterygium wilfordii HOM05D000028 ORTHO05D004513 1.0e-09 67.8 165 33.9
DCAR_004955 Daucus carota HOM05D000028 ORTHO05D004513 1.4e-09 67.4 173 32.9
Gorai.006G213800 Gossypium raimondii HOM05D000028 ORTHO05D004513 1.4e-09 67.4 189 32.3
Nitab4.5_0002225g0020 Nicotiana tabacum HOM05D000028 ORTHO05D004513 1.4e-09 67.4 167 31.7
THA.LOC104814706 Tarenaya hassleriana HOM05D000028 ORTHO05D004513 1.4e-09 67.4 168 32.1
CAN.G1058.36 Capsicum annuum HOM05D000028 ORTHO05D004513 1.8e-09 67.0 177 31.1
Nitab4.5_0006258g0020 Nicotiana tabacum HOM05D000174 ORTHO05D004513 2.3e-09 66.6 151 33.1
Aa31csc22G130 Aethionema arabicum HOM05D000028 ORTHO05D004513 3.1e-09 66.2 179 31.8
Sopen08g027060 Solanum pennellii HOM05D000028 ORTHO05D004513 3.1e-09 66.2 159 29.6
Carub.0007s2478 Capsella rubella HOM05D000028 ORTHO05D004513 4.0e-09 65.9 181 30.4
TAR375G0728 Trochodendron aralioides HOM05D000028 ORTHO05D004513 5.2e-09 65.5 180 30.6
CARHR223120 Cardamine hirsuta HOM05D000028 ORTHO05D004513 6.8e-09 65.1 182 30.2
Oeu029719.1 Olea europaea HOM05D000028 ORTHO05D004513 6.8e-09 65.1 162 29.6
Lj2A218T56 Lonicera japonica HOM05D000028 ORTHO05D004513 1.2e-08 64.3 171 32.7
SGA_v2.0_scaffold120G32888 Striga asiatica HOM05D000028 ORTHO05D004513 1.2e-08 64.3 154 31.8
AT4G16620 Arabidopsis thaliana HOM05D000028 ORTHO05D004513 1.5e-08 63.9 181 29.8
AL7G38130 Arabidopsis lyrata HOM05D000028 ORTHO05D004513 3.4e-08 62.8 181 29.3
CANSAT21G2529 Cannabis sativa HOM05D000028 ORTHO05D004513 3.4e-08 62.8 105 37.1
Cc08_g12360 Coffea canephora HOM05D000028 ORTHO05D004513 3.4e-08 62.8 155 31.6
Thhalv10025550m.g Eutrema salsugineum HOM05D000028 ORTHO05D004513 5.8e-08 62.0 172 28.5
FAN04G0811 Fragaria x ananassa HOM05D000028 ORTHO05D004513 5.8e-08 62.0 88 46.6
FAN08G3472 Fragaria x ananassa HOM05D000028 ORTHO05D004513 5.8e-08 62.0 88 46.6
FAN18G3739 Fragaria x ananassa HOM05D000028 ORTHO05D004513 5.8e-08 62.0 88 46.6
PSO170G5461 Papaver somniferum HOM05D000028 ORTHO05D004513 7.5e-08 61.6 170 30.0
BcaC07g38001 Brassica carinata HOM05D000028 ORTHO05D004513 9.8e-08 61.2 171 30.4
BolC8t48383H Brassica oleracea HOM05D000028 ORTHO05D004513 9.8e-08 61.2 171 30.4
FvH4_5g19040 Fragaria vesca HOM05D000028 ORTHO05D004513 9.8e-08 61.2 88 45.5
PSO017G3248 Papaver somniferum HOM05D000028 ORTHO05D004513 9.8e-08 61.2 170 30.0
Prupe.5G068400 Prunus persica HOM05D000028 ORTHO05D004513 9.8e-08 61.2 88 47.7
PGR031G0216 Punica granatum HOM05D000028 ORTHO05D004513 9.8e-08 61.2 152 32.2
A08p12600 Brassica napus HOM05D000028 ORTHO05D004513 1.3e-07 60.8 171 29.8
BraA08t33250Z Brassica rapa HOM05D000028 ORTHO05D004513 1.3e-07 60.8 171 29.8
Gohir.A09G196400 Gossypium hirsutum HOM05D000028 ORTHO05D004513 1.3e-07 60.8 80 50.0
SalBow6G6767 Salvia bowleyana HOM05D000028 ORTHO05D004513 1.3e-07 60.8 152 29.6
TAR629G1782 Trochodendron aralioides HOM05D000028 ORTHO05D004513 1.7e-07 60.5 174 29.9
Psat4g073280 Pisum sativum HOM05D000028 ORTHO05D004513 2.9e-07 59.7 82 51.2
Sp7g15240 Schrenkiella parvula HOM05D000028 ORTHO05D004513 4.9e-07 58.9 171 28.7
Lj4g0002206 Lotus japonicus HOM05D000028 ORTHO05D004513 8.3e-07 58.2 74 47.3
Aqoxy7G00771 Aquilegia oxysepala HOM05D000028 ORTHO05D004513 1.9e-06 57.0 156 28.2
BcaC06g31379 Brassica carinata HOM05D000028 ORTHO05D004513 1.9e-06 57.0 186 30.6
BcaNung02858 Brassica carinata HOM05D000028 ORTHO05D004513 1.9e-06 57.0 170 27.6
Eucgr.D02086 Eucalyptus grandis HOM05D000028 ORTHO05D004513 2.4e-06 56.6 177 28.8
Aa31LG2G12760 Aethionema arabicum HOM05D000028 ORTHO05D004513 4.1e-06 55.8 178 26.4


User provided reference genes

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