Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G055200 Phaseolus vulgaris HOM05D003860 ORTHO05D004218 8.0e-199 696.8 334 100.0
Glyma.12G000500 Glycine max HOM05D003860 ORTHO05D004218 2.0e-157 559.3 351 78.9
Lj3g0013538 Lotus japonicus HOM05D003860 ORTHO05D004218 3.0e-121 439.1 354 64.7
arahy.Tifrunner.gnm1.ann1.5VC0H5 Arachis hypogaea HOM05D003860 ORTHO05D004218 4.7e-106 388.7 348 59.5
Psat7g227280 Pisum sativum HOM05D003860 ORTHO05D004218 6.7e-105 384.8 340 59.1
Lalb_Chr03g0043921 Lupinus albus HOM05D003860 ORTHO05D004218 8.8e-105 384.4 340 62.4
arahy.Tifrunner.gnm1.ann1.IPZV7K Arachis hypogaea HOM05D003860 ORTHO05D004218 2.0e-104 383.3 364 57.4
Medtr4g032190 Medicago truncatula HOM05D003860 ORTHO05D004218 2.6e-104 382.9 340 59.7
TPR.G34114 Trifolium pratense HOM05D003860 ORTHO05D004218 1.0e-92 344.4 342 54.1
VMungo0251G0597 Vigna mungo HOM05D003860 ORTHO05D004218 1.1e-86 324.3 247 73.7
Atru.chr4.2181 Acer truncatum HOM05D003860 ORTHO05D004218 9.2e-78 294.7 363 46.6
Thecc.04G247900 Theobroma cacao HOM05D003860 ORTHO05D004218 3.5e-77 292.7 368 43.8
Lj3C795G8 Lonicera japonica HOM05D003860 ORTHO05D004218 7.3e-75 285.0 364 43.1
Actinidia05456 Actinidia chinensis HOM05D003860 ORTHO05D004218 4.7e-74 282.3 365 45.5
TAR365G0731 Trochodendron aralioides HOM05D003860 ORTHO05D004218 6.2e-74 282.0 364 43.7
Potri.008G163500 Populus trichocarpa HOM05D003860 ORTHO05D004218 8.0e-74 281.6 364 42.9
CSS0040755 Camellia sinensis var. sinensis HOM05D003860 ORTHO05D004218 8.9e-73 278.1 387 41.9
MD16G1211400 Malus domestica HOM05D003860 ORTHO05D004218 8.9e-73 278.1 371 41.2
Prupe.1G033500 Prunus persica HOM05D003860 ORTHO05D004218 2.0e-72 276.9 371 43.7
PGSC0003DMG400013397 Solanum tuberosum HOM05D003860 ORTHO05D004218 2.0e-72 276.9 368 42.4
Solyc03g005440.3 Solanum lycopersicum HOM05D003860 ORTHO05D004218 3.4e-72 276.2 362 43.6
RcHm_v2.0_Chr5g0051721 Rosa chinensis HOM05D003860 ORTHO05D004218 4.4e-72 275.8 344 45.1
Sopen03g001470 Solanum pennellii HOM05D003860 ORTHO05D004218 1.3e-71 274.2 362 43.6
FvH4_3g28990 Fragaria vesca HOM05D003860 ORTHO05D004218 2.4e-70 270.0 345 43.5
FAN11G1859 Fragaria x ananassa HOM05D003860 ORTHO05D004218 3.2e-70 269.6 345 43.5
FAN25G1720 Fragaria x ananassa HOM05D003860 ORTHO05D004218 3.2e-70 269.6 343 43.4
Nitab4.5_0000436g0080 Nicotiana tabacum HOM05D003860 ORTHO05D004218 3.2e-70 269.6 376 41.2
QL06p016008 Quercus lobata HOM05D003860 ORTHO05D004218 1.6e-69 267.3 402 38.1
MSTRG.9921 Avicennia marina HOM05D003860 ORTHO05D004218 2.7e-69 266.5 356 43.3
TWI09G0161 Tripterygium wilfordii HOM05D003860 ORTHO05D004218 3.5e-69 266.2 378 39.9
FAN21G0272 Fragaria x ananassa HOM05D003860 ORTHO05D004218 2.3e-68 263.5 342 44.7
Nn1g02668 Nelumbo nucifera HOM05D003860 ORTHO05D004218 6.6e-68 261.9 405 37.5
Nitab4.5_0003331g0100 Nicotiana tabacum HOM05D003860 ORTHO05D004218 8.6e-68 261.5 380 38.9
CAN.G638.70 Capsicum annuum HOM05D003860 ORTHO05D004218 7.3e-67 258.5 365 41.4
Gohir.D04G018000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 7.3e-67 258.5 363 39.7
Gorai.012G021000 Gossypium raimondii HOM05D003860 ORTHO05D004218 7.3e-67 258.5 363 39.7
Peaxi162Scf00019g03122 Petunia axillaris HOM05D003860 ORTHO05D004218 1.1e-65 254.6 354 39.8
Aqoxy2G03595 Aquilegia oxysepala HOM05D003860 ORTHO05D004218 6.8e-65 251.9 368 40.2
MELO3C026783.2 Cucumis melo HOM05D003860 ORTHO05D004218 6.8e-65 251.9 351 43.9
MBI01_g26745_MAGBIO Magnolia biondii HOM05D003860 ORTHO05D004218 1.2e-64 251.1 371 39.6
Sed0002683 Sechium edule HOM05D003860 ORTHO05D004218 2.6e-64 250.0 361 40.4
Gohir.A05G398000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 7.5e-64 248.4 363 38.8
CiPaw.02G115700 Carya illinoinensis HOM05D003860 ORTHO05D004218 9.8e-64 248.1 371 38.5
AUR62015467 Chenopodium quinoa HOM05D003860 ORTHO05D004218 1.7e-63 247.3 371 39.9
Dinv29898 Davidia involucrata HOM05D003860 ORTHO05D004218 1.7e-63 247.3 202 57.4
GSVIVG01018132001 Vitis vinifera HOM05D003860 ORTHO05D004218 3.7e-63 246.1 191 57.1
Peaxi162Scf00204g00115 Petunia axillaris HOM05D003860 ORTHO05D004218 4.9e-63 245.7 344 40.4
Sc19g0003450 Simmondsia chinensis HOM05D003860 ORTHO05D004218 1.9e-62 243.8 343 40.8
Eucgr.H03148 Eucalyptus grandis HOM05D003860 ORTHO05D004218 2.4e-62 243.4 343 40.8
RcHm_v2.0_Chr4g0391121 Rosa chinensis HOM05D003860 ORTHO05D004218 2.4e-62 243.4 395 37.2
Hund04555 Selenicereus undatus HOM05D003860 ORTHO05D004218 3.2e-62 243.0 366 38.3
Rhsim04G0189100 Rhododendron simsii HOM05D003860 ORTHO05D004218 9.2e-62 241.5 354 39.3
GSVIVG01017372001 Vitis vinifera HOM05D003860 ORTHO05D004218 9.2e-62 241.5 174 62.1
Oeu008802.1 Olea europaea HOM05D003860 ORTHO05D004218 1.2e-61 241.1 383 37.6
SalBow2G1275 Salvia bowleyana HOM05D003860 ORTHO05D004218 2.7e-61 240.0 349 39.0
RcHm_v2.0_Chr7g0211841 Rosa chinensis HOM05D003860 ORTHO05D004218 6.0e-61 238.8 395 36.5
Rhsim02G0034600 Rhododendron simsii HOM05D003860 ORTHO05D004218 1.7e-60 237.3 432 34.7
Cc03_g05000 Coffea canephora HOM05D003860 ORTHO05D004218 6.6e-60 235.3 365 38.6
Sabra08G0124700 Salix brachista HOM05D003860 ORTHO05D004218 1.5e-59 234.2 191 54.5
Duzib114G0251 Durio zibethinus HOM05D003860 ORTHO05D004218 5.6e-59 232.3 467 33.6
Ca_19732_v3 Cicer arietinum L. HOM05D003860 ORTHO05D004218 3.6e-58 229.6 159 71.1
PSO210G3069 Papaver somniferum HOM05D003860 ORTHO05D004218 1.1e-57 228.0 360 40.0
Ah.07g207450 Amaranthus hybridus HOM05D003860 ORTHO05D004218 1.8e-57 227.3 366 35.8
Manes.03G168100 Manihot esculenta HOM05D003860 ORTHO05D004218 5.2e-57 225.7 305 44.9
PSO724G0870 Papaver somniferum HOM05D003860 ORTHO05D004218 5.2e-57 225.7 362 37.8
CANSAT78G0297 Cannabis sativa HOM05D003860 ORTHO05D004218 6.8e-57 225.3 439 36.7
PSO386G0262 Papaver somniferum HOM05D003860 ORTHO05D004218 8.9e-57 224.9 364 37.9
Lsat_1_v5_gn_5_71460 Lactuca sativa HOM05D003860 ORTHO05D004218 4.4e-56 222.6 338 37.9
vmacro08440 Vaccinium macrocarpon HOM05D003860 ORTHO05D004218 1.3e-55 221.1 348 39.7
PGR004G1248 Punica granatum HOM05D003860 ORTHO05D004218 1.7e-55 220.7 333 39.3
EL10Ac3g05899 Beta vulgaris HOM05D003860 ORTHO05D004218 1.1e-54 218.0 440 33.2
DCAR_027287 Daucus carota HOM05D003860 ORTHO05D004218 5.4e-54 215.7 381 37.0
Lsat_1_v5_gn_5_72621 Lactuca sativa HOM05D003860 ORTHO05D004218 7.1e-54 215.3 340 36.2
CDE02G3490 Ceratophyllum demersum HOM05D003860 ORTHO05D004218 3.5e-53 213.0 173 53.8
Hund11859 Selenicereus undatus HOM05D003860 ORTHO05D004218 1.7e-52 210.7 344 35.8
SalBow6G3557 Salvia bowleyana HOM05D003860 ORTHO05D004218 6.6e-52 208.8 177 52.0
Nitab4.5_0009720g0020 Nicotiana tabacum HOM05D003860 ORTHO05D004218 1.1e-51 208.0 438 31.3
THA.LOC104798705 Tarenaya hassleriana HOM05D003860 ORTHO05D004218 1.1e-51 208.0 328 36.0
COL.COLO4_20681 Corchorus olitorius HOM05D003860 ORTHO05D004218 5.6e-51 205.7 286 41.6
PSO170G3926 Papaver somniferum HOM05D003860 ORTHO05D004218 9.6e-51 204.9 410 32.7
HPP92_016098 Vanilla planifolia HOM05D003860 ORTHO05D004218 4.0e-49 199.5 212 47.2
PSO724G0326 Papaver somniferum HOM05D003860 ORTHO05D004218 6.9e-49 198.7 361 33.5
AL8G18530 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 1.5e-48 197.6 330 36.4
HanXRQChr12g0378901 Helianthus annuus HOM05D003860 ORTHO05D004218 1.5e-48 197.6 371 34.5
SalBow2G2538 Salvia bowleyana HOM05D003860 ORTHO05D004218 2.0e-48 197.2 217 47.0
CARHR156760 Cardamine hirsuta HOM05D003860 ORTHO05D004218 3.4e-48 196.4 310 38.4
unitig_32.g10833 Utricularia gibba HOM05D003860 ORTHO05D004218 3.4e-48 196.4 334 36.5
PSO675G5794 Papaver somniferum HOM05D003860 ORTHO05D004218 7.6e-48 195.3 194 49.5
PSO832G4205 Papaver somniferum HOM05D003860 ORTHO05D004218 7.6e-48 195.3 288 39.6
AT5G42670 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 1.3e-47 194.5 328 37.2
Carub.0008s0633 Capsella rubella HOM05D003860 ORTHO05D004218 1.7e-47 194.1 329 35.3
PSO063G5549 Papaver somniferum HOM05D003860 ORTHO05D004218 2.9e-47 193.4 443 30.5
CARHR265010 Cardamine hirsuta HOM05D003860 ORTHO05D004218 3.8e-47 193.0 330 33.0
HanXRQChr12g0386161 Helianthus annuus HOM05D003860 ORTHO05D004218 4.9e-47 192.6 372 33.9
PGSC0003DMG400017259 Solanum tuberosum HOM05D003860 ORTHO05D004218 2.4e-46 190.3 363 34.4
Zm00001eb108590 Zea mays HOM05D003860 ORTHO05D004218 2.4e-46 190.3 193 44.0
Sp2g07130 Schrenkiella parvula HOM05D003860 ORTHO05D004218 3.2e-46 189.9 326 35.0
Haze_11316 Corylus avellana HOM05D003860 ORTHO05D004218 9.3e-46 188.3 260 39.2
Aa31LG3G8460 Aethionema arabicum HOM05D003860 ORTHO05D004218 2.7e-45 186.8 330 34.5
PSO386G0027 Papaver somniferum HOM05D003860 ORTHO05D004218 1.3e-44 184.5 354 32.8
SpUn0060_0020 Schrenkiella parvula HOM05D003860 ORTHO05D004218 3.9e-44 183.0 330 32.7
Solyc09g089570.4 Solanum lycopersicum HOM05D003860 ORTHO05D004218 3.9e-44 183.0 175 46.3
Peaxi162Scf00024g00515 Petunia axillaris HOM05D003860 ORTHO05D004218 5.1e-44 182.6 331 35.0
Thhalv10014347m.g Eutrema salsugineum HOM05D003860 ORTHO05D004218 8.7e-44 181.8 305 34.4
AL8G26450 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 1.5e-43 181.0 328 32.6
ECA233G4435 Erigeron canadensis HOM05D003860 ORTHO05D004218 1.9e-43 180.6 241 39.8
BcaC01g06158 Brassica carinata HOM05D003860 ORTHO05D004218 2.5e-43 180.3 332 32.2
Sopen09g032490 Solanum pennellii HOM05D003860 ORTHO05D004218 3.3e-43 179.9 181 45.3
BcaB07g31066 Brassica carinata HOM05D003860 ORTHO05D004218 5.6e-43 179.1 309 36.9
BcaB07g31067 Brassica carinata HOM05D003860 ORTHO05D004218 5.6e-43 179.1 309 36.9
BraA03t10876Z Brassica rapa HOM05D003860 ORTHO05D004218 5.6e-43 179.1 330 32.1
Lsat_1_v5_gn_5_72601 Lactuca sativa HOM05D003860 ORTHO05D004218 5.6e-43 179.1 250 40.4
Carub.0008s1217 Capsella rubella HOM05D003860 ORTHO05D004218 2.1e-42 177.2 329 32.8
BolC9t55408H Brassica oleracea HOM05D003860 ORTHO05D004218 3.6e-42 176.4 308 35.1
AUR62002255 Chenopodium quinoa HOM05D003860 ORTHO05D004218 1.1e-41 174.9 377 34.2
Haze_11318 Corylus avellana HOM05D003860 ORTHO05D004218 1.8e-41 174.1 155 52.3
BraA09t37590Z Brassica rapa HOM05D003860 ORTHO05D004218 3.1e-41 173.3 312 35.9
ClCG06G006760 Citrullus lanatus HOM05D003860 ORTHO05D004218 2.6e-40 170.2 288 36.5
BcaB01g04181 Brassica carinata HOM05D003860 ORTHO05D004218 4.5e-40 169.5 330 31.5
SGA_v2.0_scaffold101G29803 Striga asiatica HOM05D003860 ORTHO05D004218 7.6e-40 168.7 338 33.7
C09p25140 Brassica napus HOM05D003860 ORTHO05D004218 1.7e-39 167.5 310 34.8
A09p19840 Brassica napus HOM05D003860 ORTHO05D004218 2.2e-39 167.2 312 35.6
BcaC04g21988 Brassica carinata HOM05D003860 ORTHO05D004218 6.4e-39 165.6 311 34.7
Ciclev10005898m.g Citrus clementina HOM05D003860 ORTHO05D004218 8.4e-39 165.2 171 47.4
HanXRQChr16g0514681 Helianthus annuus HOM05D003860 ORTHO05D004218 7.1e-38 162.2 348 32.5
BcaB01g04182 Brassica carinata HOM05D003860 ORTHO05D004218 2.1e-37 160.6 329 31.0
Peaxi162Scf01247g00111 Petunia axillaris HOM05D003860 ORTHO05D004218 2.1e-37 160.6 253 37.2
ATR0665G258 Amborella trichopoda HOM05D003860 ORTHO05D004218 7.4e-35 152.1 271 35.1
C02p19970 Brassica napus HOM05D003860 ORTHO05D004218 1.1e-33 148.3 177 40.1
BolC2t08132H Brassica oleracea HOM05D003860 ORTHO05D004218 1.1e-33 148.3 177 40.1
BraA02t06261Z Brassica rapa HOM05D003860 ORTHO05D004218 1.1e-33 148.3 177 40.1
A02p11970 Brassica napus HOM05D003860 ORTHO05D004218 2.4e-33 147.1 173 40.5
BcaC06g31848 Brassica carinata HOM05D003860 ORTHO05D004218 2.6e-32 143.7 176 42.6
SHI00610 Sapria himalayana HOM05D003860 ORTHO05D004218 3.8e-31 139.8 120 53.3
SEGI_04428 Sequoiadendron giganteum HOM05D003860 ORTHO05D004218 8.4e-31 138.7 139 47.5
Os05g0140600 Oryza sativa ssp. japonica HOM05D003860 ORTHO05D004218 1.9e-30 137.5 165 41.2
A03p15860 Brassica napus HOM05D003860 ORTHO05D004218 5.5e-30 136.0 305 29.2
C03p18580 Brassica napus HOM05D003860 ORTHO05D004218 3.5e-29 133.3 305 29.5
BolC3t14252H Brassica oleracea HOM05D003860 ORTHO05D004218 3.5e-29 133.3 305 29.5
Mapoly0001s0415 Marchantia polymorpha HOM05D003860 ORTHO05D004218 3.5e-29 133.3 217 33.6
Sp6g14330 Schrenkiella parvula HOM05D003860 ORTHO05D004218 7.9e-29 132.1 261 31.4
BcaC03g14550 Brassica carinata HOM05D003860 ORTHO05D004218 1.0e-28 131.7 176 36.9
AT5G52070 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 4.3e-27 126.3 260 30.8
Mapoly0013s0014 Marchantia polymorpha HOM05D003860 ORTHO05D004218 4.0e-25 119.8 201 32.3
PGSC0003DMG400005308 Solanum tuberosum HOM05D003860 ORTHO05D004218 4.0e-25 119.8 94 53.2
SalBow5G0294 Salvia bowleyana HOM05D003860 ORTHO05D004218 1.5e-24 117.9 102 53.9
Lsat_1_v5_gn_7_62061 Lactuca sativa HOM05D003860 ORTHO05D004218 3.4e-24 116.7 115 47.0
Pp3c1_19590 Physcomitrium patens HOM05D003860 ORTHO05D004218 3.8e-23 113.2 181 35.4
BcaC01g06162 Brassica carinata HOM05D003860 ORTHO05D004218 1.9e-22 110.9 154 38.3
SMO358G0545 Selaginella moellendorffii HOM05D003860 ORTHO05D004218 5.5e-22 109.4 140 38.6
CARHR181580 Cardamine hirsuta HOM05D003860 ORTHO05D004218 1.3e-20 104.8 273 29.7
Zm00001eb417650 Zea mays HOM05D003860 ORTHO05D004218 3.0e-20 103.6 96 44.8
Lsat_1_v5_gn_2_69300 Lactuca sativa HOM05D003860 ORTHO05D004218 1.1e-19 101.7 109 44.0
AagrBONN_evm.TU.Sc2ySwM_368.1422 Anthoceros agrestis HOM05D003860 ORTHO05D004218 1.6e-18 97.8 178 29.8
PSO386G0085 Papaver somniferum HOM05D003860 ORTHO05D004218 1.8e-17 94.4 226 32.3
CBR_g50140 Chara braunii HOM05D003860 ORTHO05D004218 3.1e-17 93.6 128 38.3
PSO724G0039 Papaver somniferum HOM05D003860 ORTHO05D004218 3.8e-15 86.7 240 29.2
HPP92_016073 Vanilla planifolia HOM05D003860 ORTHO05D004218 9.3e-14 82.0 64 56.2
C03p18530 Brassica napus HOM05D003860 ORTHO05D004218 1.2e-13 81.6 255 26.3
BolC3t14250H Brassica oleracea HOM05D003860 ORTHO05D004218 1.2e-13 81.6 255 26.3
Ciclev10007055m.g Citrus clementina HOM05D003860 ORTHO05D004218 1.1e-11 75.1 165 33.3
AagrBONN_evm.TU.Sc2ySwM_369.388 Anthoceros agrestis HOM05D003141 ORTHO05D003633 2.4e-09 67.4 204 27.0
Cpa.g.sc126.47 Carica papaya HOM05D003860 ORTHO05D004218 2.4e-09 67.4 51 54.9
FAN11G2919 Fragaria x ananassa HOM05D003860 ORTHO05D004218 6.9e-09 65.9 115 34.8
Cpa.g.sc126.46 Carica papaya HOM05D003860 ORTHO05D004218 9.1e-09 65.5 40 65.0
PGR031G1519 Punica granatum HOM05D001580 ORTHO05D001517 2.0e-08 64.3 169 29.6
HPP92_016088 Vanilla planifolia HOM05D003860 ORTHO05D004218 2.6e-08 63.9 79 44.3
FvH4_3g26751 Fragaria vesca HOM05D003860 ORTHO05D004218 1.3e-07 61.6 68 42.6
Lj6g0007351 Lotus japonicus HOM05D001580 ORTHO05D001517 2.2e-07 60.8 183 27.3
arahy.Tifrunner.gnm1.ann1.5SY970 Arachis hypogaea HOM05D002784 ORTHO05D031482 2.9e-07 60.5 32 78.1
Potri.001G365800 Populus trichocarpa HOM05D001580 ORTHO05D001517 6.5e-07 59.3 166 27.7
Sabra16G0239400 Salix brachista HOM05D001580 ORTHO05D001517 1.1e-06 58.5 166 27.7
Sopen11g007360 Solanum pennellii HOM05D001580 ORTHO05D001517 1.4e-06 58.2 168 28.6
Ca_00748_v3 Cicer arietinum L. HOM05D001580 ORTHO05D001517 3.2e-06 57.0 186 25.3


User provided reference genes

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